Non-Coding RNA Search

Ss1.1-Mixn-0029i11.5

Sequence:


               
               CAGAGCCACAGGCCCCCACTGTGGGCCACCTCAGTCCCTCCACCCAGCACAGCTGTCCCT
CTCAAACCCCAGGAGTCGCTGGCCCTTGGGTCCTCACCTCTCTGGAGCGTGGATTATAGG
GGGGCCCAGGAAACTTCTAGCTCACAACCATCTCCCCCCACCAAGAGTAATGCTGCAGGG
TCCCGTCCTTCCACCCTGACTCTGCCTGTCTGTCTGCAGGAGCCTGGTGGGGGTGCTCCA
CAGAAACTATGCCTGGGCCTGGGAGCCAAGGCCATGTCCCTCTCTCGACCGGGTGAGACA
GAGCCCATCCACAGTGTCAGCTATGGCCATGTGGCCGCCTGCCAGCTAATGGGCCCCCAC
ACGCTGGCATTGAGGGTGGGAGAGAGCCAGCTCCTCCTGCAGAGTCCCCAGGTGGAAGAG
ATCATGCAGCTGGTGAACGCTTACTTGGCCAACCCCTCCCCCGAGAGGCCCAGCAGCAGC
CCTTCTCCTCCATGCCAAGACCTGCCAGACACCTCCCCTCCCAGCCAGCACCCGGCCCTG
GACGAGTCCCAGGGACAGTCTGGCTGTTTGGGGCAGCTGCAGGACTGAGCTTGCCAAGAG
GTCACGACCTCCCTCTTGCCTCCAGCCTGGACCTGGACTGTGCTGAGATTTCAGGGAACC
ATGGACCCTTTTGGCCCTGCAGGGACAGGGCACACACCCAAGGGCTGCAATGGGTGCAGA
CAATTTTCTAGTTTGTTTCTTAATTTATTTGTAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAGCCACAGGCCCCCACTGTGGGCCACCTCAGTCCCTCCACCCAGCACAGCTGTCCCT
CTCAAACCCCAGGAGTCGCTGGCCCTTGGGTCCTCACCTCTCTGGAGCGTGGATTATAGG
GGGGCCCAGGAAACTTCTAGCTCACAACCATCTCCCCCCACCAAGAGTAATGCTGCAGGG
TCCCGTCCTTCCACCCTGACTCTGCCTGTCTGTCTGCAGGAGCCTGGTGGGGGTGCTCCA
CAGAAACTATGCCTGGGCCTGGGAGCCAAGGCCATGTCCCTCTCTCGACCGGGTGAGACA
GAGCCCATCCACAGTGTCAGCTATGGCCATGTGGCCGCCTGCCAGCTAATGGGCCCCCAC
ACGCTGGCATTGAGGGTGGGAGAGAGCCAGCTCCTCCTGCAGAGTCCCCAGGTGGAAGAG
ATCATGCAGCTGGTGAACGCTTACTTGGCCAACCCCTCCCCCGAGAGGCCCAGCAGCAGC
CCTTCTCCTCCATGCCAAGACCTGCCAGACACCTCCCCTCCCAGCCAGCACCCGGCCCTG
GACGAGTCCCAGGGACAGTCTGGCTGTTTGGGGCAGCTGCAGGACTGAGCTTGCCAAGAG
GTCACGACCTCCCTCTTGCCTCCAGCCTGGACCTGGACTGTGCTGAGATTTCAGGGAACC
ATGGACCCTTTTGGCCCTGCAGGGACAGGGCACACACCCAAGGGCTGCAATGGGTGCAGA
CAATTTTCTAGTTTGTTTCTTAATTTATTTGTAGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61887849|ref|XP_592337.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61887849|ref|XP_592337.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               640-756, + strand, RNAz p=0.802671

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               640-756, + strand, RNAz p=0.802671

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC016062, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC016062, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               410-756, gnl|bosTau2|chr19 (39040635-39040983)
               

               
               410-756, gnl|Hg17|chr17 (38073849-38073498)
               

               
               410-756, gnl|Mm7|chr11 (101272105-101271743)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               410-756, gnl|bosTau2|chr19 (39040635-39040983)
               

               
               410-756, gnl|Hg17|chr17 (38073849-38073498)
               

               
               410-756, gnl|Mm7|chr11 (101272105-101271743)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ton (0.1755)
               

               
               duo (0.172801)
               

               
               pgl (0.118483)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               pgl (0.118483)

	410-756, gnl\|bosTau2\|chr19 (39040635-39040983)
	410-756, gnl\|Hg17\|chr17 (38073849-38073498)
	410-756, gnl\|Mm7\|chr11 (101272105-101271743)