Non-Coding RNA Search

Ss1.1-Mixn-0029i14.5

Sequence:


               
               TCGCGGGAGTCCCTGCTCTAGGCTGTCTGAGGGAACGTCGAGTGACTACCTCCGCCGCCG
CGTTCCAGCCCCGCGTTGCTTCGGGAGAAAGCAGAGGCCGAGTCCGGGTGGGTGCGATGG
CCGCTGTGGTGGTCAAGCGGGAAGGGCCGCCGTTCATCAGTGAGGCCGCTGTGCGGGGCA
ACGCCGCCGTCCTGGATTACTGCCGGACCTCGGTGTCGGCGCTGTCGGGGGCCACGGCCG
GCATCCTCGGCCTCACCGGCCTGTACGGTTTCATCTTCTACCTGCTCGCCTCCATCCTGC
TCTCTTTGCTCTTAATTCTCAAGGCGGGAAGGAGGTGGAACAAATATTTTAAGTCGCGAA
GACCTCTCTTTACAGGAGGTCTCATTGGAGGCCTCTTCACCTACGTCCTGTTCTGGACAT
TCCTCTACGGCATGGTGCACGTCTACTGAAAGGAGGGCAGGGATGACTTCTTTTTGAAAA
GCAGATTGGGAGGACGGTTGCCGGAAATTAACAGCGTGTAGACTTACCTAGTTTTTAAAT
TGTTGGATTCGCTGCTTGTTCTGTAACGTTATGAATAATTTATATCTGAAGACGAAGAGC
CTGTACTGTTCTTCAGATTAAATGAAGCGTGAGACCCTTAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGCGGGAGTCCCTGCTCTAGGCTGTCTGAGGGAACGTCGAGTGACTACCTCCGCCGCCG
CGTTCCAGCCCCGCGTTGCTTCGGGAGAAAGCAGAGGCCGAGTCCGGGTGGGTGCGATGG
CCGCTGTGGTGGTCAAGCGGGAAGGGCCGCCGTTCATCAGTGAGGCCGCTGTGCGGGGCA
ACGCCGCCGTCCTGGATTACTGCCGGACCTCGGTGTCGGCGCTGTCGGGGGCCACGGCCG
GCATCCTCGGCCTCACCGGCCTGTACGGTTTCATCTTCTACCTGCTCGCCTCCATCCTGC
TCTCTTTGCTCTTAATTCTCAAGGCGGGAAGGAGGTGGAACAAATATTTTAAGTCGCGAA
GACCTCTCTTTACAGGAGGTCTCATTGGAGGCCTCTTCACCTACGTCCTGTTCTGGACAT
TCCTCTACGGCATGGTGCACGTCTACTGAAAGGAGGGCAGGGATGACTTCTTTTTGAAAA
GCAGATTGGGAGGACGGTTGCCGGAAATTAACAGCGTGTAGACTTACCTAGTTTTTAAAT
TGTTGGATTCGCTGCTTGTTCTGTAACGTTATGAATAATTTATATCTGAAGACGAAGAGC
CTGTACTGTTCTTCAGATTAAATGAAGCGTGAGACCCTTAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9CQW0_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9CQW0_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               224-423, - strand, RNAz p=0.994908

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               224-423, - strand, RNAz p=0.994908

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               66-639, gnl|bosTau2|chr19 (18935889-18936460)
               

               
               66-639, gnl|Hg17|chr17 (3519138-3519711)
               

               
               66-639, gnl|Mm7|chr11 (73258328-73257768)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               66-639, gnl|bosTau2|chr19 (18935889-18936460)
               

               
               66-639, gnl|Hg17|chr17 (3519138-3519711)
               

               
               66-639, gnl|Mm7|chr11 (73258328-73257768)

Expressed library(ies): 39 entry(ies)

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Expressed library(ies): 39 entry(ies)

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               ssp (0.813118)
               

               
               cbr (0.767853)
               

               
               cbe (0.717703)
               

               
               hea (0.613497)
               

               
               hlv (0.557025)
               

               
               cki (0.495704)
               

               
               csk (0.422238)
               

               
               che (0.408942)
               

               
               cov (0.396458)
               

               
               nlu (0.383362)
               

               
               sag (0.36543)
               

               
               fbs (0.350693)
               

               
               ecc (0.345105)
               

               
               mcp (0.341297)
               

               
               cje (0.330469)
               

               
               cli (0.305623)
               

               
               sme (0.305437)
               

               
               pty (0.285429)
               

               
               cst (0.280073)
               

               
               ece (0.229305)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               lun (0.150489)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

Expressed library(ies): 39 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (0.813118)
               

               
               cbr (0.767853)
               

               
               cbe (0.717703)
               

               
               hea (0.613497)
               

               
               hlv (0.557025)
               

               
               cki (0.495704)
               

               
               csk (0.422238)
               

               
               che (0.408942)
               

               
               cov (0.396458)
               

               
               nlu (0.383362)
               

               
               sag (0.36543)
               

               
               fbs (0.350693)
               

               
               ecc (0.345105)
               

               
               mcp (0.341297)
               

               
               cje (0.330469)
               

               
               cli (0.305623)
               

               
               sme (0.305437)
               

               
               pty (0.285429)
               

               
               cst (0.280073)
               

               
               ece (0.229305)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               lun (0.150489)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

	66-639, gnl\|bosTau2\|chr19 (18935889-18936460)
	66-639, gnl\|Hg17\|chr17 (3519138-3519711)
	66-639, gnl\|Mm7\|chr11 (73258328-73257768)

	ssp (0.813118)
	cbr (0.767853)
	cbe (0.717703)
	hea (0.613497)
	hlv (0.557025)
	cki (0.495704)
	csk (0.422238)
	che (0.408942)
	cov (0.396458)
	nlu (0.383362)
	sag (0.36543)
	fbs (0.350693)
	ecc (0.345105)
	mcp (0.341297)
	cje (0.330469)
	cli (0.305623)
	sme (0.305437)
	pty (0.285429)
	cst (0.280073)
	ece (0.229305)
	jej (0.197844)
	fcc (0.197785)
	col (0.195008)
	nep (0.183925)
	sin (0.174948)
	nco (0.161734)
	csp (0.161186)
	lun (0.150489)
	hyp (0.142837)
	lnt (0.142308)
	ste (0.135208)
	ute (0.132784)
	kid (0.129735)
	ese (0.126502)
	cly (0.120642)
	eru (0.120048)
	ebs (0.118301)
	jca (0.11396)
	spc (0.113366)