Non-Coding RNA Search

Ss1.1-Mixn-0029i22.5

Sequence:


               
               GAGGTTCTGCCCACAGCATTCACGCGGGCCTGGCCAGAGCTCCTGGCCTCTGTGATAGGG
GGGATCATAGGCCTTCTGTTTCTCGCTGGGTTCTGCATCGTCTGTGTTAAATGCTGGCAC
CGCAGGCGCCGGGCGGAGCGGATGTCTCAGATCAAGAGACTCCTTAGTGAGAAGAAGACC
TGCCAATGCGCCCACCGGCAACAGAAGAACTATTCCCTCACCTGAGGCCCTGCCAGGAGG
CACTGCCCACCTGCTGTCTCCCCCCACCCCCTGCCCGCCACGCATCTCCTGCTGGGCTCC
TGGGCCTGCAGACCAGAAGAATGTAGCTGACCCAGCGCCTCTGGCCGCCTCCTGCCCCCT
CATTCAGTGGGCCTTGCTTCTGCTTTTCCAGAGGCTCACTCACACCCTTTCTTCCTCTTT
CCCTTTTCCCTCAAGCCCTGGTCCTTCAATGGTCTCTTCTCCACTCTCTCCCTCCCTGCT
CTCTTGGGTCCCAGGGGAGCGCGTGGGACTGGACCTGCCTGGCTGAGTATCTGAAGCATG
AAGCACAGGGCAGTCATGGTACAGGAGAGAACCCTGGGACCCGAGAGGGCAGGGACTAGC
CCAAGATCACACAGCCAGTCAGGGACAGATCCAGATCCAAAGGCTCCTGCCAGACGGTGC
TGCTCCAGTCTGCATGCATCGCCCCCTGCACTGACG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGTTCTGCCCACAGCATTCACGCGGGCCTGGCCAGAGCTCCTGGCCTCTGTGATAGGG
GGGATCATAGGCCTTCTGTTTCTCGCTGGGTTCTGCATCGTCTGTGTTAAATGCTGGCAC
CGCAGGCGCCGGGCGGAGCGGATGTCTCAGATCAAGAGACTCCTTAGTGAGAAGAAGACC
TGCCAATGCGCCCACCGGCAACAGAAGAACTATTCCCTCACCTGAGGCCCTGCCAGGAGG
CACTGCCCACCTGCTGTCTCCCCCCACCCCCTGCCCGCCACGCATCTCCTGCTGGGCTCC
TGGGCCTGCAGACCAGAAGAATGTAGCTGACCCAGCGCCTCTGGCCGCCTCCTGCCCCCT
CATTCAGTGGGCCTTGCTTCTGCTTTTCCAGAGGCTCACTCACACCCTTTCTTCCTCTTT
CCCTTTTCCCTCAAGCCCTGGTCCTTCAATGGTCTCTTCTCCACTCTCTCCCTCCCTGCT
CTCTTGGGTCCCAGGGGAGCGCGTGGGACTGGACCTGCCTGGCTGAGTATCTGAAGCATG
AAGCACAGGGCAGTCATGGTACAGGAGAGAACCCTGGGACCCGAGAGGGCAGGGACTAGC
CCAAGATCACACAGCCAGTCAGGGACAGATCCAGATCCAAAGGCTCCTGCCAGACGGTGC
TGCTCCAGTCTGCATGCATCGCCCCCTGCACTGACG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8HY28_SHEEP

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8HY28_SHEEP

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               521-689, gnl|bosTau2|chr5 (61170742-61170917)
               

               
               521-689, gnl|canFam2|chr27 (41232193-41231915)
               

               
               521-689, gnl|dasNov1|scaffold_5223 (11606-11856)
               

               
               521-689, gnl|echTel1|scaffold_319441 (92502-92300)
               

               
               521-689, gnl|hg17|chr12 (6799028-6799331)
               

               
               521-689, gnl|Hg17|chr12 (6799091-6799269)
               

               
               521-689, gnl|mm7|chr6 (124892358-124892067)
               

               
               521-689, gnl|Mm7|chr6 (124892302-124892126)
               

               
               521-689, gnl|oryCun1|scaffold_191519 (11035-11317)
               

               
               521-689, gnl|panTro1|chr10 (7335657-7335960)
               

               
               521-689, gnl|rheMac2|chr11 (7000546-7000849)
               

               
               521-689, gnl|rn3|chr4 (161233498-161233220)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               521-689, gnl|bosTau2|chr5 (61170742-61170917)
               

               
               521-689, gnl|canFam2|chr27 (41232193-41231915)
               

               
               521-689, gnl|dasNov1|scaffold_5223 (11606-11856)
               

               
               521-689, gnl|echTel1|scaffold_319441 (92502-92300)
               

               
               521-689, gnl|hg17|chr12 (6799028-6799331)
               

               
               521-689, gnl|Hg17|chr12 (6799091-6799269)
               

               
               521-689, gnl|mm7|chr6 (124892358-124892067)
               

               
               521-689, gnl|Mm7|chr6 (124892302-124892126)
               

               
               521-689, gnl|oryCun1|scaffold_191519 (11035-11317)
               

               
               521-689, gnl|panTro1|chr10 (7335657-7335960)
               

               
               521-689, gnl|rheMac2|chr11 (7000546-7000849)
               

               
               521-689, gnl|rn3|chr4 (161233498-161233220)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               med (0.348756)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.348756)

	521-689, gnl\|bosTau2\|chr5 (61170742-61170917)
	521-689, gnl\|canFam2\|chr27 (41232193-41231915)
	521-689, gnl\|dasNov1\|scaffold_5223 (11606-11856)
	521-689, gnl\|echTel1\|scaffold_319441 (92502-92300)
	521-689, gnl\|hg17\|chr12 (6799028-6799331)
	521-689, gnl\|Hg17\|chr12 (6799091-6799269)
	521-689, gnl\|mm7\|chr6 (124892358-124892067)
	521-689, gnl\|Mm7\|chr6 (124892302-124892126)
	521-689, gnl\|oryCun1\|scaffold_191519 (11035-11317)
	521-689, gnl\|panTro1\|chr10 (7335657-7335960)
	521-689, gnl\|rheMac2\|chr11 (7000546-7000849)
	521-689, gnl\|rn3\|chr4 (161233498-161233220)