Ss1.1-Mixn-0029k01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACGTCATGACTCTGGTACTCAGGAAAGATCTCATCTCGACTCTGGGGTGCACCATCACG AGCCTGACCTTCTGGGACCCCAGCTGCCAGGCCGAGGACACAGATGACAAGTTTGTCTTG CGTGGCACCTACTCCAGCTGTGGCATGAAAGTGGCAGAAAATGTAGTGATCAGCAACGAG GTGGTCGTCAACCTTCTGTCAAGCTCATCACCGCAGCGGAAACAGGTGCAGTGCATCAAC CTGGACAGCCTCTCCTTCCAGCTGGGCCTCTACCTCAGCCCGCACTTCCTCCAGGCCTCC AACACCATCGAGCTGGGGCAACAGGGCTTTGTGCAGGTGAGCATGTCCCCCTCCATCCCT GAGCTCATGACCCAGCTGGACAGCTGCCAACTGAATCTGGGGCCTGACGTGGAAATGGTG GACCTCATCCAGAACCAGGAAGCCAAGAGCAGCTGTGTGAGCCTGCTGTCCCCGAGCCCT GGTGGGGACATGCGCTTCAGCTTCCTCCTCCGTGGCTACGTAGTGCCCATGCCCACGGCG GGCATCCTCAGCTGCACCGTAGCCCTGCGTCCCAGGACTTGGTCCCTGGATGTCCACAAG ACTGCATCCACGCGACTGAACATCGTCAGCCCGGGCCTGCCTGACAAAGGCCTGGTCCTG CCCGCTGTCCTGGGCATCACCTTCGGCGCCTTCCTCATCGGGGCCCTGCTCACCGCCGCG CTCTGGTACATCCACTCGCACACGCGTCACCCCGGCAAGCGGGAGCCCGTGGTGGCGGTG GCTGCCCCGGCCTCCTCGGAGAGCAGTAGCACCAACCACAGCATCGGGAGCACGCAGAGC ACGCCCTGCTCCACCAGCAGCATGGCGTAGCGCCCAGCCTGGAGCCCTGGGGGCCACCCC ACCAGCCCTGGCCCAGCAGGAGAGACTGAGCAGCCGCCAGCTGGGAACCACTGGCCATGA ACTTATCCCAGGACCCCAACCCCTCCATTCGGCCAAGGACGGACCATGCCCTCTGCGCCC TCCCCTCCTGCCTCCCTCTCAGAGGCCTGCTGCCAGGGAGGGCACCAGCTTGGAACAGCT TGGGGTCCCCCCACCCCACCCCACCGAACCGTCAAACCCAGTGGGCTTGGGGTACAGCTG CCCGGGACCACGGAGAAAGAGACCACTTCCCGACATGTCCACGCTGTCGTAGCAACCCAA GGGGCTGTGATTTAACCTGGATTCAGCACTCACTGACCTGGGCTGGGTGGGAGTTGAAAA CTCCCAGACGGACTCAGCCCAGCCCGCCCAGGCTGACAGGCACCTCCTCCACGAGAACAG AAGAGGTCCGGCCCAGAGCCACCTGGACCTGCTCCCAGCGGCCTCCCCATCTGGACTGGC ACAACTTCCAAGGGGAAACTGAAGTTTAGGGGCTCCCAGCCTGGGAGTGGGGGAGCCTAG CTCCTCCCTGTAACCGCCACACAGAGACACCCCCCCCCTCTGCCCCCAGGCAGCCAGGCT GCCTGACCTGGGCCCACCCCTGTATACTCACCACCAATAAACCAGACCATGAAACCAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACGTCATGACTCTGGTACTCAGGAAAGATCTCATCTCGACTCTGGGGTGCACCATCACG AGCCTGACCTTCTGGGACCCCAGCTGCCAGGCCGAGGACACAGATGACAAGTTTGTCTTG CGTGGCACCTACTCCAGCTGTGGCATGAAAGTGGCAGAAAATGTAGTGATCAGCAACGAG GTGGTCGTCAACCTTCTGTCAAGCTCATCACCGCAGCGGAAACAGGTGCAGTGCATCAAC CTGGACAGCCTCTCCTTCCAGCTGGGCCTCTACCTCAGCCCGCACTTCCTCCAGGCCTCC AACACCATCGAGCTGGGGCAACAGGGCTTTGTGCAGGTGAGCATGTCCCCCTCCATCCCT GAGCTCATGACCCAGCTGGACAGCTGCCAACTGAATCTGGGGCCTGACGTGGAAATGGTG GACCTCATCCAGAACCAGGAAGCCAAGAGCAGCTGTGTGAGCCTGCTGTCCCCGAGCCCT GGTGGGGACATGCGCTTCAGCTTCCTCCTCCGTGGCTACGTAGTGCCCATGCCCACGGCG GGCATCCTCAGCTGCACCGTAGCCCTGCGTCCCAGGACTTGGTCCCTGGATGTCCACAAG ACTGCATCCACGCGACTGAACATCGTCAGCCCGGGCCTGCCTGACAAAGGCCTGGTCCTG CCCGCTGTCCTGGGCATCACCTTCGGCGCCTTCCTCATCGGGGCCCTGCTCACCGCCGCG CTCTGGTACATCCACTCGCACACGCGTCACCCCGGCAAGCGGGAGCCCGTGGTGGCGGTG GCTGCCCCGGCCTCCTCGGAGAGCAGTAGCACCAACCACAGCATCGGGAGCACGCAGAGC ACGCCCTGCTCCACCAGCAGCATGGCGTAGCGCCCAGCCTGGAGCCCTGGGGGCCACCCC ACCAGCCCTGGCCCAGCAGGAGAGACTGAGCAGCCGCCAGCTGGGAACCACTGGCCATGA ACTTATCCCAGGACCCCAACCCCTCCATTCGGCCAAGGACGGACCATGCCCTCTGCGCCC TCCCCTCCTGCCTCCCTCTCAGAGGCCTGCTGCCAGGGAGGGCACCAGCTTGGAACAGCT TGGGGTCCCCCCACCCCACCCCACCGAACCGTCAAACCCAGTGGGCTTGGGGTACAGCTG CCCGGGACCACGGAGAAAGAGACCACTTCCCGACATGTCCACGCTGTCGTAGCAACCCAA GGGGCTGTGATTTAACCTGGATTCAGCACTCACTGACCTGGGCTGGGTGGGAGTTGAAAA CTCCCAGACGGACTCAGCCCAGCCCGCCCAGGCTGACAGGCACCTCCTCCACGAGAACAG AAGAGGTCCGGCCCAGAGCCACCTGGACCTGCTCCCAGCGGCCTCCCCATCTGGACTGGC ACAACTTCCAAGGGGAAACTGAAGTTTAGGGGCTCCCAGCCTGGGAGTGGGGGAGCCTAG CTCCTCCCTGTAACCGCCACACAGAGACACCCCCCCCCTCTGCCCCCAGGCAGCCAGGCT GCCTGACCTGGGCCCACCCCTGTATACTCACCACCAATAAACCAGACCATGAAACCAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 952-1071, - strand, RNAz p=0.745102 | |
| 1192-1385, - strand, RNAz p=0.999761 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 952-1071, - strand, RNAz p=0.745102 | |
| 1192-1385, - strand, RNAz p=0.999761 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 39-182, gnl|bosTau2|chr11 (77352834-77352694) | |
| 39-182, gnl|canFam2|chr9 (58928987-58928777) | |
| 39-182, gnl|echTel1|scaffold_298982 (7768-7963) | |
| 39-182, gnl|hg17|chr9 (127661719-127661923) | |
| 39-182, gnl|Hg17|chr9 (127661871-127661731) | |
| 39-182, gnl|loxAfr1|scaffold_22131 (38196-37988) | |
| 39-182, gnl|mm7|chr2 (32685017-32684810) | |
| 39-182, gnl|Mm7|chr2 (32684863-32685003) | |
| 39-182, gnl|monDom2|scaffold_51 (2257036-2257216) | |
| 39-182, gnl|panTro1|chr11 (112477428-112477632) | |
| 39-182, gnl|rheMac2|chr15 (98756828-98756624) | |
| 332-589, gnl|bosTau2|chr11 (77351393-77351136) | |
| 332-589, gnl|canFam2|chr9 (58930426-58930225) | |
| 332-589, gnl|dasNov1|scaffold_163426 (297-89) | |
| 332-589, gnl|echTel1|scaffold_298982 (5727-5942) | |
| 332-589, gnl|hg17|chr9 (127659926-127660143) | |
| 332-589, gnl|Hg17|chr9 (127660215-127659952) | |
| 332-589, gnl|loxAfr1|scaffold_22131 (39738-39537) | |
| 332-589, gnl|mm7|chr2 (32686476-32686271) | |
| 332-589, gnl|Mm7|chr2 (32686197-32686454) | |
| 332-589, gnl|monDom2|scaffold_51 (2255412-2255619) | |
| 332-589, gnl|panTro1|chr11 (112475636-112475853) | |
| 332-589, gnl|rheMac2|chr15 (98758615-98758398) | |
| 728-1557, gnl|bosTau2|chr11 (77348813-77348019) | |
| 728-1557, gnl|Hg17|chr9 (127657671-127656849) | |
| 728-1557, gnl|Mm7|chr2 (32688727-32689432) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 39-182, gnl|bosTau2|chr11 (77352834-77352694) | |
| 39-182, gnl|canFam2|chr9 (58928987-58928777) | |
| 39-182, gnl|echTel1|scaffold_298982 (7768-7963) | |
| 39-182, gnl|hg17|chr9 (127661719-127661923) | |
| 39-182, gnl|Hg17|chr9 (127661871-127661731) | |
| 39-182, gnl|loxAfr1|scaffold_22131 (38196-37988) | |
| 39-182, gnl|mm7|chr2 (32685017-32684810) | |
| 39-182, gnl|Mm7|chr2 (32684863-32685003) | |
| 39-182, gnl|monDom2|scaffold_51 (2257036-2257216) | |
| 39-182, gnl|panTro1|chr11 (112477428-112477632) | |
| 39-182, gnl|rheMac2|chr15 (98756828-98756624) | |
| 332-589, gnl|bosTau2|chr11 (77351393-77351136) | |
| 332-589, gnl|canFam2|chr9 (58930426-58930225) | |
| 332-589, gnl|dasNov1|scaffold_163426 (297-89) | |
| 332-589, gnl|echTel1|scaffold_298982 (5727-5942) | |
| 332-589, gnl|hg17|chr9 (127659926-127660143) | |
| 332-589, gnl|Hg17|chr9 (127660215-127659952) | |
| 332-589, gnl|loxAfr1|scaffold_22131 (39738-39537) | |
| 332-589, gnl|mm7|chr2 (32686476-32686271) | |
| 332-589, gnl|Mm7|chr2 (32686197-32686454) | |
| 332-589, gnl|monDom2|scaffold_51 (2255412-2255619) | |
| 332-589, gnl|panTro1|chr11 (112475636-112475853) | |
| 332-589, gnl|rheMac2|chr15 (98758615-98758398) | |
| 728-1557, gnl|bosTau2|chr11 (77348813-77348019) | |
| 728-1557, gnl|Hg17|chr9 (127657671-127656849) | |
| 728-1557, gnl|Mm7|chr2 (32688727-32689432) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| nlu (0.575043) | |
| cag (0.302389) | |
| cga (0.279096) | |
| eep (0.245128) | |
| nms (0.213858) | |
| mas (0.210305) | |
| fli (0.202881) | |
| col (0.195008) | |
| fbs (0.175346) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| jca (0.11396) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.575043) | |
| cag (0.302389) | |
| cga (0.279096) | |
| eep (0.245128) | |
| nms (0.213858) | |
| mas (0.210305) | |
| fli (0.202881) | |
| col (0.195008) | |
| fbs (0.175346) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| jca (0.11396) |