Non-Coding RNA Search

Ss1.1-Mixn-0029l18.5

Sequence:


               
               AGCGTGAGAGGTGGGTGGCGTCCGCGGTCATGGCGACTCGCAGAGCTCTGCACTTCGTGT
TCAAAGTGGGAAACCGCTTCCAGACTGCATATTTCTATCGTGATGTCCTGGGGATGAAGA
TTCTTCGACATGAGGAATTTGACGAAGGCTGCAAAGCTGCCTGTAATGGGCCTTACGATG
GGAAATGGAGTAAAACAATGGTGGGATTTGGACCCGAGGATGATCATTTTGTTGCTGAAC
TGACGTACAATTACGGTATCGGAAACTACAAGCTTGGCAATGACTTCATGGGAATCACAC
TCGCTTCTAGCCAGGCCGTCAGCAACGCCAGGAAGCTGGAGTGGCCGCTCAGTGAAGTTG
CGGAAGGGGTTTATGAAACCGAAGCCCCGGGAGGATATAAGTTCTATTTGCAGAACTGCA
GTCCACCTCGGTCAGATCCTGTATTAAAAGTCACTCTAGCAGTGTCTGATCTTCAGAAGT
CCTTGAACTACTGGTCTAATCTACTGGGAATGAAAATTTATGAAAAAGATGAAAAGACGC
AAAGGGCTTTGCTGGGCTATGCTGATAACCAGTGTAAGCTGGAGCTACAGGGCATCCAAG
GGGCAGTTGATCATGCAGCAGCTTTTGGACGAATTGCCTTTTCTTGCCCCCAGAAAGAGT
TGCCAGAATTAGAAGACTTGATGAAAAGGGAGAACCAGAAGATTCTGACTCCCCTGGTGA
GCCTGGACACTCCGGGGAAAGCAACGGTGCAAGTCGTCATTCTGGCTGACCCCGATGGAC
ACGAAATTTGCTTTGTGGGGGACGAAGCATTTCGAGAACTCTCTAAGATGGATCCAGGGG
GAAGCAAATTACTGGATGACGCAATGGCAGAAGACAAAAGTGATGAATGGTTTGCCGAAC
GAAATAAGCCAAAGGCTTCAGGTTAAGAGAAGGTACCATGTGAAACAAGCATTTGGGATT
CTGCCGAATGCCTGTGAGGCCTGACGTGTGCCCTATGTGATAAACACTCTCCCAGCTTGA
TTGTTTCCCGTGCAGCCAAGGAGGCTGGGGTGGTGGAGATTTGCATTTCTAATATGTGAG
AGCTCTGATATATTTTAGAGAGAAAATCAGTCCATTTAGAGGAGAACTCTGGCCGTTACC
TACACTGTCCCTGCAAAGGGCACATTCTGTATGTGACTATATTAGATTAATAATAAATTC
TCCGGCCTGGGGCAGCTCTATGGAACATTACCTATGTTGGGGATAGAGTGAGTTTTGATA
AGAATGTAGATTCAATGAGAATCCAGATCAGTTGCATATAGCAGGAGTATTTCCAACACC
TGATTGACGCTCCCACATTCCTTGCTTTCAAATTTTGAGCAGCCAGAGAAAACAGACAGA
AGGATCTAAGGTGCTGCATTTCCCCGTGCCTGGCTCTCTGTGTGGTTTTTTTGTTTTTGT
TTTTATGTATATACGTCTTCATAAGAAAATGTTAGATTTCTTAGAAATGGGTTAGGTGGT
TTCTTCAGCTTGAAAATTAAAGTATATTTTCTTGTTTTCTGTTTGATTCTGCAGAACAAG
TCCATTTTAATCACTGGAAATAAATTAAGCTGGGCATATTAAAAAAAAAAAAAAAAAAAA
ATGCTTCTGAAATCAAGCTGCTCACAACCAGTCCATTAGACTCATTATTTAAAGTGGTGG
CCATCGACAGAATAATTTAAATCAACCATGATAGAAAAAATAAAAACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCGTGAGAGGTGGGTGGCGTCCGCGGTCATGGCGACTCGCAGAGCTCTGCACTTCGTGT
TCAAAGTGGGAAACCGCTTCCAGACTGCATATTTCTATCGTGATGTCCTGGGGATGAAGA
TTCTTCGACATGAGGAATTTGACGAAGGCTGCAAAGCTGCCTGTAATGGGCCTTACGATG
GGAAATGGAGTAAAACAATGGTGGGATTTGGACCCGAGGATGATCATTTTGTTGCTGAAC
TGACGTACAATTACGGTATCGGAAACTACAAGCTTGGCAATGACTTCATGGGAATCACAC
TCGCTTCTAGCCAGGCCGTCAGCAACGCCAGGAAGCTGGAGTGGCCGCTCAGTGAAGTTG
CGGAAGGGGTTTATGAAACCGAAGCCCCGGGAGGATATAAGTTCTATTTGCAGAACTGCA
GTCCACCTCGGTCAGATCCTGTATTAAAAGTCACTCTAGCAGTGTCTGATCTTCAGAAGT
CCTTGAACTACTGGTCTAATCTACTGGGAATGAAAATTTATGAAAAAGATGAAAAGACGC
AAAGGGCTTTGCTGGGCTATGCTGATAACCAGTGTAAGCTGGAGCTACAGGGCATCCAAG
GGGCAGTTGATCATGCAGCAGCTTTTGGACGAATTGCCTTTTCTTGCCCCCAGAAAGAGT
TGCCAGAATTAGAAGACTTGATGAAAAGGGAGAACCAGAAGATTCTGACTCCCCTGGTGA
GCCTGGACACTCCGGGGAAAGCAACGGTGCAAGTCGTCATTCTGGCTGACCCCGATGGAC
ACGAAATTTGCTTTGTGGGGGACGAAGCATTTCGAGAACTCTCTAAGATGGATCCAGGGG
GAAGCAAATTACTGGATGACGCAATGGCAGAAGACAAAAGTGATGAATGGTTTGCCGAAC
GAAATAAGCCAAAGGCTTCAGGTTAAGAGAAGGTACCATGTGAAACAAGCATTTGGGATT
CTGCCGAATGCCTGTGAGGCCTGACGTGTGCCCTATGTGATAAACACTCTCCCAGCTTGA
TTGTTTCCCGTGCAGCCAAGGAGGCTGGGGTGGTGGAGATTTGCATTTCTAATATGTGAG
AGCTCTGATATATTTTAGAGAGAAAATCAGTCCATTTAGAGGAGAACTCTGGCCGTTACC
TACACTGTCCCTGCAAAGGGCACATTCTGTATGTGACTATATTAGATTAATAATAAATTC
TCCGGCCTGGGGCAGCTCTATGGAACATTACCTATGTTGGGGATAGAGTGAGTTTTGATA
AGAATGTAGATTCAATGAGAATCCAGATCAGTTGCATATAGCAGGAGTATTTCCAACACC
TGATTGACGCTCCCACATTCCTTGCTTTCAAATTTTGAGCAGCCAGAGAAAACAGACAGA
AGGATCTAAGGTGCTGCATTTCCCCGTGCCTGGCTCTCTGTGTGGTTTTTTTGTTTTTGT
TTTTATGTATATACGTCTTCATAAGAAAATGTTAGATTTCTTAGAAATGGGTTAGGTGGT
TTCTTCAGCTTGAAAATTAAAGTATATTTTCTTGTTTTCTGTTTGATTCTGCAGAACAAG
TCCATTTTAATCACTGGAAATAAATTAAGCTGGGCATATTAAAAAAAAAAAAAAAAAAAA
ATGCTTCTGAAATCAAGCTGCTCACAACCAGTCCATTAGACTCATTATTTAAAGTGGTGG
CCATCGACAGAATAATTTAAATCAACCATGATAGAAAAAATAAAAACC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|14250349|gb|AAH08605.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|14250349|gb|AAH08605.1|

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               624-743, - strand, RNAz p=0.863729
               

               
               824-1056, - strand, RNAz p=0.954311
               

               
               1096-1204, + strand, RNAz p=0.555282

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               624-743, - strand, RNAz p=0.863729
               

               
               824-1056, - strand, RNAz p=0.954311
               

               
               1096-1204, + strand, RNAz p=0.555282

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               4-119, gnl|bosTau2|chr15 (34503746-34503633)
               

               
               4-119, gnl|Hg17|chr17 (632270-632158)
               

               
               4-119, gnl|Mm7|chr11 (76325229-76325131)
               


               
               304-1280, gnl|bosTau2|chr15 (34502798-34501819)
               


               
               1414-1683, gnl|bosTau2|chr19 (16539250-16539519)
               

               
               1414-1683, gnl|Hg17|chr17 (609524-609261)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-119, gnl|bosTau2|chr15 (34503746-34503633)
               

               
               4-119, gnl|Hg17|chr17 (632270-632158)
               

               
               4-119, gnl|Mm7|chr11 (76325229-76325131)
               


               
               304-1280, gnl|bosTau2|chr15 (34502798-34501819)
               


               
               1414-1683, gnl|bosTau2|chr19 (16539250-16539519)
               

               
               1414-1683, gnl|Hg17|chr17 (609524-609261)

Expressed library(ies): 43 entry(ies)

More info

Expressed library(ies): 43 entry(ies)

Help | Less info


               
               mgp (0.922722)
               

               
               cki (0.826173)
               

               
               cbe (0.717703)
               

               
               ste (0.540833)
               

               
               elu (0.385356)
               

               
               fbs (0.350693)
               

               
               sme (0.305437)
               

               
               isp (0.300752)
               

               
               cte (0.29274)
               

               
               csk (0.281492)
               

               
               cst (0.280073)
               

               
               ssp (0.271039)
               

               
               kid (0.259471)
               

               
               bla (0.248694)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               cty (0.20816)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 43 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.922722)
               

               
               cki (0.826173)
               

               
               cbe (0.717703)
               

               
               ste (0.540833)
               

               
               elu (0.385356)
               

               
               fbs (0.350693)
               

               
               sme (0.305437)
               

               
               isp (0.300752)
               

               
               cte (0.29274)
               

               
               csk (0.281492)
               

               
               cst (0.280073)
               

               
               ssp (0.271039)
               

               
               kid (0.259471)
               

               
               bla (0.248694)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               cty (0.20816)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	624-743, - strand, RNAz p=0.863729
	824-1056, - strand, RNAz p=0.954311
	1096-1204, + strand, RNAz p=0.555282

	4-119, gnl\|bosTau2\|chr15 (34503746-34503633)
	4-119, gnl\|Hg17\|chr17 (632270-632158)
	4-119, gnl\|Mm7\|chr11 (76325229-76325131)

	304-1280, gnl\|bosTau2\|chr15 (34502798-34501819)

	1414-1683, gnl\|bosTau2\|chr19 (16539250-16539519)
	1414-1683, gnl\|Hg17\|chr17 (609524-609261)

	mgp (0.922722)
	cki (0.826173)
	cbe (0.717703)
	ste (0.540833)
	elu (0.385356)
	fbs (0.350693)
	sme (0.305437)
	isp (0.300752)
	cte (0.29274)
	csk (0.281492)
	cst (0.280073)
	ssp (0.271039)
	kid (0.259471)
	bla (0.248694)
	ece (0.229305)
	spc (0.226732)
	cty (0.20816)
	hea (0.204499)
	fcc (0.197785)
	col (0.195008)
	cmu (0.186393)
	nep (0.183925)
	sag (0.182715)
	sto (0.179824)
	ill (0.175593)
	sin (0.174948)
	rec (0.17307)
	duo (0.172801)
	eye (0.170503)
	cut (0.169924)
	fhi (0.169578)
	nje (0.16592)
	lun (0.150489)
	bfe (0.149858)
	ski (0.146735)
	spl (0.143184)
	nmm (0.132802)
	ova (0.129132)
	ret (0.128733)
	clu (0.119646)
	ebs (0.118301)
	jej (0.0989218)
	ldo (0.0970026)