Non-Coding RNA Search

Ss1.1-Mixn-0029l24.5

Sequence:


               
               TCCCCATGCTCATCTTTCCCCGCCTCACTGGCTCAGGCACTGTGATCTTAGGCAAAAGAT
TGGTGGTACCAGGACCCTCGAGGGGGATCTCCCACCCAAAGCAAATCAGCCCGGGACCCC
TAGGGAGCTTATGGATTCCAGAGGGCCTAGGAGTCTCCTGAAATGGTCCCCCAAATAGCG
TGTGTGTTTGCATATACGAATTTTCCTGGGGAGAGGGTCCGTGGATTCCCCCAGCTTCAT
TCAGAGGCCCCTGATTCCCTAAGGGTCTGAACTTCTGCTCTGGATTGGAGCTGTCATACC
CCTCCCCCTCCCAAGTGTGCCTAAACTGCTGTGGGCCTGCTCCCTCTACCCAAGGGCTGT
GGTCTGCAGCACCCACCCTGGAGGGCTCTCCGTGGTTTCCCCTCACCTCTAGCTCCCACT
GGTGCCCTCTCAGCAGTGCTCCTGTGCCCCAGCGTTCACCCCCTGGGCTCACCAGCAGGG
AGTCCTTGCCCCCCACCTCCCGGGGCCAAGCTTCTCCTGTCCCACGTGATGTTTCATCTG
CCGCCATCTCCGCTGTGCGTATCCACCCCAGCGGGCAGCATGGATATTTAGGGACAGGGA
GCTTGGGCACCTGTCATCGAATGCAAGAGGACGCCTGCTCTGAGAGTCTTCGAAGGGCCC
CTCCTTGTGACCAGCCCAGGCTTGGCGCTCATCAGCCATCCTTTGGGACTCAGCCCTGTT
CTATTTTCGCTTTTCCTCTTCTTGACCAAAGCATGTGCCACTCGCTGTCCCTGAGGACTT
CGTCTTTATGAAAAACATCTGGAATAAAACCACTTCTCACATGCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCCATGCTCATCTTTCCCCGCCTCACTGGCTCAGGCACTGTGATCTTAGGCAAAAGAT
TGGTGGTACCAGGACCCTCGAGGGGGATCTCCCACCCAAAGCAAATCAGCCCGGGACCCC
TAGGGAGCTTATGGATTCCAGAGGGCCTAGGAGTCTCCTGAAATGGTCCCCCAAATAGCG
TGTGTGTTTGCATATACGAATTTTCCTGGGGAGAGGGTCCGTGGATTCCCCCAGCTTCAT
TCAGAGGCCCCTGATTCCCTAAGGGTCTGAACTTCTGCTCTGGATTGGAGCTGTCATACC
CCTCCCCCTCCCAAGTGTGCCTAAACTGCTGTGGGCCTGCTCCCTCTACCCAAGGGCTGT
GGTCTGCAGCACCCACCCTGGAGGGCTCTCCGTGGTTTCCCCTCACCTCTAGCTCCCACT
GGTGCCCTCTCAGCAGTGCTCCTGTGCCCCAGCGTTCACCCCCTGGGCTCACCAGCAGGG
AGTCCTTGCCCCCCACCTCCCGGGGCCAAGCTTCTCCTGTCCCACGTGATGTTTCATCTG
CCGCCATCTCCGCTGTGCGTATCCACCCCAGCGGGCAGCATGGATATTTAGGGACAGGGA
GCTTGGGCACCTGTCATCGAATGCAAGAGGACGCCTGCTCTGAGAGTCTTCGAAGGGCCC
CTCCTTGTGACCAGCCCAGGCTTGGCGCTCATCAGCCATCCTTTGGGACTCAGCCCTGTT
CTATTTTCGCTTTTCCTCTTCTTGACCAAAGCATGTGCCACTCGCTGTCCCTGAGGACTT
CGTCTTTATGAAAAACATCTGGAATAAAACCACTTCTCACATGCAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               88-281, - strand, RNAz p=0.999325

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               88-281, - strand, RNAz p=0.999325

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               88-249, 190831 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BE722543.1|), 
blast E-value=9e-16, identity=82.1% 
               

               
               88-249, 193672 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BE723752.1|), 
blast E-value=9e-16, identity=82.1% 
               

               
               88-249, 213882 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BE808630.1|), 
blast E-value=9e-16, identity=82.1% 
               

               
               88-249, 434588 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BI538880.1|), 
blast E-value=9e-16, identity=82.1% 
               

               
               88-249, 453354 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|BI540315.1|), 
blast E-value=9e-16, identity=82.1% 
               

               
               95-281, LIB4003-028-Q1-K1-A12 LIB4003 Canis familiaris cDNA clone 
(gb|DN399686.1|), blast E-value=4e-30, identity=84.66%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               88-249, 190831 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BE722543.1|), 
blast E-value=9e-16, identity=82.1% 
               

               
               88-249, 193672 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BE723752.1|), 
blast E-value=9e-16, identity=82.1% 
               

               
               88-249, 213882 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BE808630.1|), 
blast E-value=9e-16, identity=82.1% 
               

               
               88-249, 434588 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BI538880.1|), 
blast E-value=9e-16, identity=82.1% 
               

               
               88-249, 453354 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|BI540315.1|), 
blast E-value=9e-16, identity=82.1% 
               

               
               95-281, LIB4003-028-Q1-K1-A12 LIB4003 Canis familiaris cDNA clone 
(gb|DN399686.1|), blast E-value=4e-30, identity=84.66%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               10-823, gnl|bosTau2|chr10 (55665271-55666082)
               

               
               10-823, gnl|Hg17|chr14 (68889963-68890934)
               

               
               10-823, gnl|Mm7|chr12 (78565735-78566676)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-823, gnl|bosTau2|chr10 (55665271-55666082)
               

               
               10-823, gnl|Hg17|chr14 (68889963-68890934)
               

               
               10-823, gnl|Mm7|chr12 (78565735-78566676)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cga (0.279096)
               

               
               nmm (0.265604)
               

               
               nje (0.16592)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               nmm (0.265604)
               

               
               nje (0.16592)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	88-249, 190831 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb\|BE722543.1\|), blast E-value=9e-16, identity=82.1%
	88-249, 193672 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb\|BE723752.1\|), blast E-value=9e-16, identity=82.1%
	88-249, 213882 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb\|BE808630.1\|), blast E-value=9e-16, identity=82.1%
	88-249, 434588 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb\|BI538880.1\|), blast E-value=9e-16, identity=82.1%
	88-249, 453354 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb\|BI540315.1\|), blast E-value=9e-16, identity=82.1%
	95-281, LIB4003-028-Q1-K1-A12 LIB4003 Canis familiaris cDNA clone (gb\|DN399686.1\|), blast E-value=4e-30, identity=84.66%

	10-823, gnl\|bosTau2\|chr10 (55665271-55666082)
	10-823, gnl\|Hg17\|chr14 (68889963-68890934)
	10-823, gnl\|Mm7\|chr12 (78565735-78566676)

	cga (0.279096)
	nmm (0.265604)
	nje (0.16592)
	ese (0.126502)
	pgl (0.118483)
	ebs (0.118301)
	ecc (0.115035)