Non-Coding RNA Search

Ss1.1-Mixn-0029m07.5

Sequence:


               
               AACGTGAGAAAAGGGTCTTTGCACTTTGATGAAGCAGAATGCAAGTTTCCTCTGAATATG
ACAAGAGTGACTGTTTTATCCACTGGTACCGACTTGTTATTTGAAACTACAATGTGTTTT
GATTTTTAAACTGTTAAGGGCATCACAGTATCTACCTCCCAAGGTGGTTGTGAGGTTTTC
TGTAGTTGGGGGTAACATTACTTTGTTTGGGGGGGTGGGGAAGGGGGCAATTTTGTTGCA
AATTTTCCACTATGTGTACTGTGTCTGGAGTTAAAACCATGGAAAATATTCAAAGGCCGT
ACTAGGACCATAAGAGTGCTTCGCTTGCCAGTGGAACTAATCTCTAACACAGAGTTTCCC
TCGTGTTGCTTTAATGCCTAAGAGTCAAGACTCTGCTAACCCTTAGCACCCAGGTGTGTG
AACCACACGGCTCAGACACCTCATGGCTTTGCAGCCAGGGAGGGAGCCTAGCTTTTTGCT
CCCTCGCTGTCTTATGAGCCCTCAACCATGGAGTCTCCAAGCAATTTAGAGTTTCTTCGA
GGGGTCCTCACTGTCCATCTTTCCCTCAGCCCCACTCTAAGAAGCCTGGAGGGCGGTCCC
AGGATCCCACCCCGCTTCTCGCAAGCCCATGCCGTGTGTCTCTGGGGCCTGCTTCGTATT
CTGAATGTAGGTGCGACTCTGCTTCTTCCTCTCCTAAAATGGGGCAGCCTTAAAGAATGA
CTGATCCCACTGCCAGGGTGACTCACTTATACAAGGACTTTTCCAGGTTAGCAGACAAGG
ACCTTTCTGGTGGGCCTGCTTTTGTGGGTTCACAGAAACCAAATTACTGTGGGTTGCAAA
GAATTAGCAGGTCATTTGAAAAGCAGACATCCCTTCACCCAGACTGTGGTTTTGCATGCT
CAAGTTCTCAGTCTGTGAACTTTGGTGAGGGATCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACGTGAGAAAAGGGTCTTTGCACTTTGATGAAGCAGAATGCAAGTTTCCTCTGAATATG
ACAAGAGTGACTGTTTTATCCACTGGTACCGACTTGTTATTTGAAACTACAATGTGTTTT
GATTTTTAAACTGTTAAGGGCATCACAGTATCTACCTCCCAAGGTGGTTGTGAGGTTTTC
TGTAGTTGGGGGTAACATTACTTTGTTTGGGGGGGTGGGGAAGGGGGCAATTTTGTTGCA
AATTTTCCACTATGTGTACTGTGTCTGGAGTTAAAACCATGGAAAATATTCAAAGGCCGT
ACTAGGACCATAAGAGTGCTTCGCTTGCCAGTGGAACTAATCTCTAACACAGAGTTTCCC
TCGTGTTGCTTTAATGCCTAAGAGTCAAGACTCTGCTAACCCTTAGCACCCAGGTGTGTG
AACCACACGGCTCAGACACCTCATGGCTTTGCAGCCAGGGAGGGAGCCTAGCTTTTTGCT
CCCTCGCTGTCTTATGAGCCCTCAACCATGGAGTCTCCAAGCAATTTAGAGTTTCTTCGA
GGGGTCCTCACTGTCCATCTTTCCCTCAGCCCCACTCTAAGAAGCCTGGAGGGCGGTCCC
AGGATCCCACCCCGCTTCTCGCAAGCCCATGCCGTGTGTCTCTGGGGCCTGCTTCGTATT
CTGAATGTAGGTGCGACTCTGCTTCTTCCTCTCCTAAAATGGGGCAGCCTTAAAGAATGA
CTGATCCCACTGCCAGGGTGACTCACTTATACAAGGACTTTTCCAGGTTAGCAGACAAGG
ACCTTTCTGGTGGGCCTGCTTTTGTGGGTTCACAGAAACCAAATTACTGTGGGTTGCAAA
GAATTAGCAGGTCATTTGAAAAGCAGACATCCCTTCACCCAGACTGTGGTTTTGCATGCT
CAAGTTCTCAGTCTGTGAACTTTGGTGAGGGATCAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               138-237, - strand, RNAz p=0.664318

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               138-237, - strand, RNAz p=0.664318

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-697, gnl|bosTau2|chr19 (32394861-32394152)
               

               
               1-697, gnl|canFam2|chr9 (26060978-26060315)
               

               
               1-697, gnl|echTel1|scaffold_55855 (1358-717)
               

               
               1-697, gnl|hg17|chr17 (35168134-35168808)
               

               
               1-697, gnl|Hg17|chr17 (35169268-35168233)
               

               
               1-697, gnl|loxAfr1|scaffold_13895 (34468-35140)
               

               
               1-697, gnl|mm7|chr11 (98570564-98571145)
               

               
               1-697, gnl|Mm7|chr11 (98571282-98570668)
               

               
               1-697, gnl|oryCun1|scaffold_59741 (1306-1975)
               

               
               1-697, gnl|panTro1|chr19 (38405006-38405679)
               

               
               1-697, gnl|rheMac2|chr16 (49858419-49859093)
               

               
               1-697, gnl|rn3|chr10 (87284850-87285453)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-697, gnl|bosTau2|chr19 (32394861-32394152)
               

               
               1-697, gnl|canFam2|chr9 (26060978-26060315)
               

               
               1-697, gnl|echTel1|scaffold_55855 (1358-717)
               

               
               1-697, gnl|hg17|chr17 (35168134-35168808)
               

               
               1-697, gnl|Hg17|chr17 (35169268-35168233)
               

               
               1-697, gnl|loxAfr1|scaffold_13895 (34468-35140)
               

               
               1-697, gnl|mm7|chr11 (98570564-98571145)
               

               
               1-697, gnl|Mm7|chr11 (98571282-98570668)
               

               
               1-697, gnl|oryCun1|scaffold_59741 (1306-1975)
               

               
               1-697, gnl|panTro1|chr19 (38405006-38405679)
               

               
               1-697, gnl|rheMac2|chr16 (49858419-49859093)
               

               
               1-697, gnl|rn3|chr10 (87284850-87285453)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               spl (0.286369)
               

               
               clu (0.119646)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.286369)
               

               
               clu (0.119646)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

	1-697, gnl\|bosTau2\|chr19 (32394861-32394152)
	1-697, gnl\|canFam2\|chr9 (26060978-26060315)
	1-697, gnl\|echTel1\|scaffold_55855 (1358-717)
	1-697, gnl\|hg17\|chr17 (35168134-35168808)
	1-697, gnl\|Hg17\|chr17 (35169268-35168233)
	1-697, gnl\|loxAfr1\|scaffold_13895 (34468-35140)
	1-697, gnl\|mm7\|chr11 (98570564-98571145)
	1-697, gnl\|Mm7\|chr11 (98571282-98570668)
	1-697, gnl\|oryCun1\|scaffold_59741 (1306-1975)
	1-697, gnl\|panTro1\|chr19 (38405006-38405679)
	1-697, gnl\|rheMac2\|chr16 (49858419-49859093)
	1-697, gnl\|rn3\|chr10 (87284850-87285453)