Non-Coding RNA Search

Ss1.1-Mixn-0029p15.5

Sequence:


               
               AGATGATGTCATATCAGTATTACTATTCTGCTAAGCTGCTTCATTCAGGCCTACATAATT
TTTTTTAAAGGGAACTTTGGTTAATCAGGTGATAACAAGGGAATTAATATAAATTAGAAT
GAATGCAGAAAAAGTTAACTTTTCTATTTTAAAGTTTACAGGTCTGTTTCTCTTAATCTG
ATTATGTGTATCTATGAAAATGACACAGGCATTATACCTTTATTAATTACTGTCTTGGGC
AAAAAAAACCTTAATTATGTGAAGTCTGGTTATAGGAAACCAAAAAGTAGTGCAGCATTT
CAGTATATATGCAAATAAAGGGAAGTGACAGGTCACATATCAAATGAATGAAAATTTCAC
TCTGTTGAAACTTAAAAAACAAAAACAAAACCAAATTTATACCAAAGACCATTATTAGAA
AGTAAATACCTTAAAACAAAGGGAAACACAAAAGCCTAAATTGGAATGATGCTGTTTTAC
AATAAGAATTTCTTAGGCATTCCAGATCTGTGATGAGGAACAGATCAGCTGTTTCATAAT
AGTAAGCACATTATTTTTAGGGCCAAGGAACATTTTTTTGACTCTTGGTCATAATCATTT
AGTTACTTAGTTAGATTATTTTTGATGCCCTCAAAATAAAATGGAAATACTGACTTACCA
GGGATTCTTAATAATAGTATCCTACGGAAAATGTGTTACTCTCTTCACGAAGTGTTGCAT
AAGTCATTGTTTAAAGCACTAATACTCCATCTGGGGTGCTTGTTACAGCCAAATTTCTTT
TACTCCCCTACTGCTTCCCTCCACTTAGAAGTGCAGCAAACTTTTGGGCAGCTTCCTTCC
CTTCCATGGCACTGCCTGCTTATTAGAAGTCAAATATAAAAACAAGACACCACCTTTAAT
ATGAAAGTGTGAGCTGAATGAGGTAAAATGGTATTAGTGGGCTCTATATTTTTTAAGGCT
GTACAATTGTTTCAGTGTCACTTTTATACATACTTCTACGTATGTAAACATGTCTTCAGA
GTTTACACTTTCATTTGTATCTGCTGGGCTGGATTAAGCTTCGTTGTGATTGTGACCAAT
ATTCAGGCCACGCAAGCACTGTCTTATTATCACATCGCCAGTTAGTTGTAATAAATGTTA
AATGTACACCACTGTAGTGTGTTTGTATCTGTCTCTTTCCAAAAGCTTGTCAAACTATAA
AGAGCCGCTGAAGGAAGAATTTAAAACGATTTTTGGGTAAAATGTTGGAAATTCACCTCC
ACTTGAATGTGGTGGTGGTTAAAAGCACACAGGAGATAAATGGTGGAAGATTTAAGGCGT
CTTCATGTATTTCAGGCTCATAAAAAATGTGGAGTCCATGCTACTGAGAGCTTATCTACA
CATTTATTTTCAATAAATGCCGCTTTAAAAACCAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATGATGTCATATCAGTATTACTATTCTGCTAAGCTGCTTCATTCAGGCCTACATAATT
TTTTTTAAAGGGAACTTTGGTTAATCAGGTGATAACAAGGGAATTAATATAAATTAGAAT
GAATGCAGAAAAAGTTAACTTTTCTATTTTAAAGTTTACAGGTCTGTTTCTCTTAATCTG
ATTATGTGTATCTATGAAAATGACACAGGCATTATACCTTTATTAATTACTGTCTTGGGC
AAAAAAAACCTTAATTATGTGAAGTCTGGTTATAGGAAACCAAAAAGTAGTGCAGCATTT
CAGTATATATGCAAATAAAGGGAAGTGACAGGTCACATATCAAATGAATGAAAATTTCAC
TCTGTTGAAACTTAAAAAACAAAAACAAAACCAAATTTATACCAAAGACCATTATTAGAA
AGTAAATACCTTAAAACAAAGGGAAACACAAAAGCCTAAATTGGAATGATGCTGTTTTAC
AATAAGAATTTCTTAGGCATTCCAGATCTGTGATGAGGAACAGATCAGCTGTTTCATAAT
AGTAAGCACATTATTTTTAGGGCCAAGGAACATTTTTTTGACTCTTGGTCATAATCATTT
AGTTACTTAGTTAGATTATTTTTGATGCCCTCAAAATAAAATGGAAATACTGACTTACCA
GGGATTCTTAATAATAGTATCCTACGGAAAATGTGTTACTCTCTTCACGAAGTGTTGCAT
AAGTCATTGTTTAAAGCACTAATACTCCATCTGGGGTGCTTGTTACAGCCAAATTTCTTT
TACTCCCCTACTGCTTCCCTCCACTTAGAAGTGCAGCAAACTTTTGGGCAGCTTCCTTCC
CTTCCATGGCACTGCCTGCTTATTAGAAGTCAAATATAAAAACAAGACACCACCTTTAAT
ATGAAAGTGTGAGCTGAATGAGGTAAAATGGTATTAGTGGGCTCTATATTTTTTAAGGCT
GTACAATTGTTTCAGTGTCACTTTTATACATACTTCTACGTATGTAAACATGTCTTCAGA
GTTTACACTTTCATTTGTATCTGCTGGGCTGGATTAAGCTTCGTTGTGATTGTGACCAAT
ATTCAGGCCACGCAAGCACTGTCTTATTATCACATCGCCAGTTAGTTGTAATAAATGTTA
AATGTACACCACTGTAGTGTGTTTGTATCTGTCTCTTTCCAAAAGCTTGTCAAACTATAA
AGAGCCGCTGAAGGAAGAATTTAAAACGATTTTTGGGTAAAATGTTGGAAATTCACCTCC
ACTTGAATGTGGTGGTGGTTAAAAGCACACAGGAGATAAATGGTGGAAGATTTAAGGCGT
CTTCATGTATTTCAGGCTCATAAAAAATGTGGAGTCCATGCTACTGAGAGCTTATCTACA
CATTTATTTTCAATAAATGCCGCTTTAAAAACCAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1413, gnl|bosTau2|chrX (39908043-39906622)
               

               
               1-1413, gnl|Hg17|chrX (15605018-15603590)
               

               
               1-1413, gnl|Mm7|chrX (158706628-158708022)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1413, gnl|bosTau2|chrX (39908043-39906622)
               

               
               1-1413, gnl|Hg17|chrX (15605018-15603590)
               

               
               1-1413, gnl|Mm7|chrX (158706628-158708022)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

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               ste (0.405625)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               tbr (0.154178)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ret (0.128733)
               

               
               cty (0.10408)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ste (0.405625)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               tbr (0.154178)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ret (0.128733)
               

               
               cty (0.10408)

	1-1413, gnl\|bosTau2\|chrX (39908043-39906622)
	1-1413, gnl\|Hg17\|chrX (15605018-15603590)
	1-1413, gnl\|Mm7\|chrX (158706628-158708022)

	ste (0.405625)
	cbe (0.239234)
	ece (0.229305)
	fcc (0.197785)
	aor (0.195274)
	fty (0.17584)
	fbs (0.175346)
	fhi (0.169578)
	csp (0.161186)
	tbr (0.154178)
	hyp (0.142837)
	lnt (0.142308)
	csk (0.140746)
	ret (0.128733)
	cty (0.10408)