Ss1.1-Mixn-0030a06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCGGGGGGCGAGGCTGGTGTGACTTTAGGGCAGCCGCATCTTTCTCGGCAGGATCTCGC GACTTTGGATGTTACCAAGTTGACACCACTTTCACATGAAGTGATCAGCAGGCAAGCCAC AATTAACATAGGTACAATTGGTCATGTAGCTCATGGGAAATCTACAGTCGTAAAAGCTAT TTCTGGAGTTCACACTGTCAGGTTCAAAAATGAACTAGAAAGAAATATTACAATCAAACT TGGCTATGCTAATGCTAAGATTTATAAACTTGATGACCCAAGTTGTCCTCGGCCAGAATG TTACAGATCCTGTGGAAGTAGTACACCTGATGAGTTTCCTACAGACATTCCAGGGACCAA AGGGAACTTCAAATTAGTGAGACATGTTTCCTTTGTTGACTGTCCTGGCCACGATATTTT GATGGCTACAATGCTGAATGGTGCCGCAGTGATGGATGCAGCTCTTCTGTTGATAGCTGG TAATGAGTCTTGTCCTCAACCTCAGACTTCTGAACACCTGGCTGCTATAGAAATCATGAA ACTGAAGCATATTTTGATTCTACAAAATAAAATTGACTTGGTAAAAGAAAGCCAGGCTAA AGAGCAGTATGACCAAATCCTTGCATTTGTACAAGGTACAGTAGCAGAAGGAGCTCCTAT TATTCCTATTTCTGCTCAGCTAAAATACAATATTGAAGTTGTCTGTGAGTACATAGTAAA GAAAATTCCAGTACCTCCAAGAGACTTTACTTCAGAACCCCGACTTATTGTTATTAGATC CTTTGATGTCAACAAACCTGGCTGTGAAGTTGATGACCTCAAGGGAGGTGTAGCTGGTGG TAGTATTCTAAAAGGAGTATTAAAGGTGGGCCAGGAGATAGAAGTCAGACCTGGTATTGT TTCCAAAGATAGTGAAGGAAAACTCATGTGTAAACCAATCTTTTCCAAAATTGTATCACT TTTCGCAGAGCATAATGATCTTCAGTATGCTGCTCCAGGAGGTCTTATTGGAGTTGGAAC AAAAATTGACCCCACTTTGTGCCGGGCTGACAGAATGGTGGGACAGGTACTTGGTGCAGT TGGAGCTTTGCCTGAGATCTTCACAGAATTGGAAATTTCGTATTTCCTGCTTAGACGGCT TCTGGGTGTACGCACTGAAGGAGACAAGAAAGCAGCAAAGGTGCAAAAGCTGTCTAAGAA TGAAGTGCTTATGGTGAACATAGGATCCCTGTCAACAGGAGGAAGAGTTAGTGCAGTCAA GGCTGATTTGGGCAAAATTGTTTTGACTAATCCTGTGTGCACAGAAGTAGGAGAAAAAAT TGCCCTTAGCCGAAGAGTTGAGAAACACTGGCGTTTAATTGGTTGGGGTCAAATAAGAAG AGGAGTGACAATCAAGCCAACAGTAGATGATGACTGAAGAGTTAAATAATGGATTTGGAT GAAGTTGGAATTTCTCTTAACAACCTAGGGGTATATTTTCAAAGCAATAGTGGGGAATTA ATTTCACAGCTCATTACCTTAGTAGTAGCTGTAAGGTTTTTCTCATTTTTTGGTGATGAA AATTTAACCTCTAGTACTAAAATACAGTCTGCAATAAATGTAAAAATTGGCATCATGTTG GATCAGTCTACATTTTACCAGAAATTAATCATTCCCAAATAATGTCTAATTTATATATCA GTGCAGGTTTGAAATGAAACTGTTTGCTACAATCAGCCTTTGCTGTAGCACACATGCCAC TGAACCTACTCGAAAATAAAGTTCTTCTTCTTATTTAAAAAAAAAAAACTTTGAGTAGCT CCAGGCTTAAAGCATTATTGTGTCAGTAAAAACTTGAAGACAAATCCTTGAAGACCAGCT GCCCTCCGTTTGCCCCATATTTTGTTGCTTTTCCTGTTTAATTTTGAGTGAAAAAAATTA ATAAGTTCAAATAAAATTATCCTTTAGGGCAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCGGGGGGCGAGGCTGGTGTGACTTTAGGGCAGCCGCATCTTTCTCGGCAGGATCTCGC GACTTTGGATGTTACCAAGTTGACACCACTTTCACATGAAGTGATCAGCAGGCAAGCCAC AATTAACATAGGTACAATTGGTCATGTAGCTCATGGGAAATCTACAGTCGTAAAAGCTAT TTCTGGAGTTCACACTGTCAGGTTCAAAAATGAACTAGAAAGAAATATTACAATCAAACT TGGCTATGCTAATGCTAAGATTTATAAACTTGATGACCCAAGTTGTCCTCGGCCAGAATG TTACAGATCCTGTGGAAGTAGTACACCTGATGAGTTTCCTACAGACATTCCAGGGACCAA AGGGAACTTCAAATTAGTGAGACATGTTTCCTTTGTTGACTGTCCTGGCCACGATATTTT GATGGCTACAATGCTGAATGGTGCCGCAGTGATGGATGCAGCTCTTCTGTTGATAGCTGG TAATGAGTCTTGTCCTCAACCTCAGACTTCTGAACACCTGGCTGCTATAGAAATCATGAA ACTGAAGCATATTTTGATTCTACAAAATAAAATTGACTTGGTAAAAGAAAGCCAGGCTAA AGAGCAGTATGACCAAATCCTTGCATTTGTACAAGGTACAGTAGCAGAAGGAGCTCCTAT TATTCCTATTTCTGCTCAGCTAAAATACAATATTGAAGTTGTCTGTGAGTACATAGTAAA GAAAATTCCAGTACCTCCAAGAGACTTTACTTCAGAACCCCGACTTATTGTTATTAGATC CTTTGATGTCAACAAACCTGGCTGTGAAGTTGATGACCTCAAGGGAGGTGTAGCTGGTGG TAGTATTCTAAAAGGAGTATTAAAGGTGGGCCAGGAGATAGAAGTCAGACCTGGTATTGT TTCCAAAGATAGTGAAGGAAAACTCATGTGTAAACCAATCTTTTCCAAAATTGTATCACT TTTCGCAGAGCATAATGATCTTCAGTATGCTGCTCCAGGAGGTCTTATTGGAGTTGGAAC AAAAATTGACCCCACTTTGTGCCGGGCTGACAGAATGGTGGGACAGGTACTTGGTGCAGT TGGAGCTTTGCCTGAGATCTTCACAGAATTGGAAATTTCGTATTTCCTGCTTAGACGGCT TCTGGGTGTACGCACTGAAGGAGACAAGAAAGCAGCAAAGGTGCAAAAGCTGTCTAAGAA TGAAGTGCTTATGGTGAACATAGGATCCCTGTCAACAGGAGGAAGAGTTAGTGCAGTCAA GGCTGATTTGGGCAAAATTGTTTTGACTAATCCTGTGTGCACAGAAGTAGGAGAAAAAAT TGCCCTTAGCCGAAGAGTTGAGAAACACTGGCGTTTAATTGGTTGGGGTCAAATAAGAAG AGGAGTGACAATCAAGCCAACAGTAGATGATGACTGAAGAGTTAAATAATGGATTTGGAT GAAGTTGGAATTTCTCTTAACAACCTAGGGGTATATTTTCAAAGCAATAGTGGGGAATTA ATTTCACAGCTCATTACCTTAGTAGTAGCTGTAAGGTTTTTCTCATTTTTTGGTGATGAA AATTTAACCTCTAGTACTAAAATACAGTCTGCAATAAATGTAAAAATTGGCATCATGTTG GATCAGTCTACATTTTACCAGAAATTAATCATTCCCAAATAATGTCTAATTTATATATCA GTGCAGGTTTGAAATGAAACTGTTTGCTACAATCAGCCTTTGCTGTAGCACACATGCCAC TGAACCTACTCGAAAATAAAGTTCTTCTTCTTATTTAAAAAAAAAAAACTTTGAGTAGCT CCAGGCTTAAAGCATTATTGTGTCAGTAAAAACTTGAAGACAAATCCTTGAAGACCAGCT GCCCTCCGTTTGCCCCATATTTTGTTGCTTTTCCTGTTTAATTTTGAGTGAAAAAAATTA ATAAGTTCAAATAAAATTATCCTTTAGGGCAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 474-572, - strand, RNAz p=0.630121 | |
| 1128-1364, - strand, RNAz p=0.767165 | |
| 1471-1697, - strand, RNAz p=0.902038 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 474-572, - strand, RNAz p=0.630121 | |
| 1128-1364, - strand, RNAz p=0.767165 | |
| 1471-1697, - strand, RNAz p=0.902038 |
| Aligned organism(s): 76 entry(ies) | More info |
| Aligned organism(s): 76 entry(ies) | Help | Less info |
| 129-259, gnl|bosTau2|chrX (37983065-37982935) | |
| 129-259, gnl|canFam2|chrX (19617689-19617820) | |
| 129-259, gnl|danRer3|chr24 (10850298-10850167) | |
| 129-259, gnl|dasNov1|scaffold_164414 (1077-1208) | |
| 129-259, gnl|echTel1|scaffold_281329 (27320-27451) | |
| 129-259, gnl|fr1|chrUn (157269783-157269652) | |
| 129-259, gnl|galGal2|chr1 (111593627-111593496) | |
| 129-259, gnl|hg17|chrX (23835192-23835323) | |
| 129-259, gnl|Hg17|chrX (23835188-23835322) | |
| 129-259, gnl|loxAfr1|scaffold_1497 (7930-7799) | |
| 129-259, gnl|mm7|chrX (89596320-89596189) | |
| 129-259, gnl|Mm7|chrX (89596318-89596188) | |
| 129-259, gnl|monDom2|scaffold_48 (7867690-7867559) | |
| 129-259, gnl|oryCun1|scaffold_97480 (10108-10239) | |
| 129-259, gnl|panTro1|chrX (24669228-24669359) | |
| 129-259, gnl|rheMac2|chrX (21872006-21872137) | |
| 129-259, gnl|rn3|chrX (81636797-81636666) | |
| 129-259, gnl|tetNig1|chrUn_random (52956730-52956861) | |
| 129-259, gnl|xenTro1|scaffold_100 (798754-798885) | |
| 474-645, gnl|bosTau2|chrX (37979130-37978960) | |
| 474-645, gnl|canFam2|chrX (19621310-19621503) | |
| 474-645, gnl|danRer3|chr24 (10846970-10846780) | |
| 474-645, gnl|dasNov1|scaffold_164414 (4465-4667) | |
| 474-645, gnl|echTel1|scaffold_169610 (3187-3398) | |
| 474-645, gnl|fr1|chrUn (157269189-157269006) | |
| 474-645, gnl|galGal2|chr1 (111591413-111591218) | |
| 474-645, gnl|hg17|chrX (23840150-23840355) | |
| 474-645, gnl|Hg17|chrX (23840187-23840357) | |
| 474-645, gnl|loxAfr1|scaffold_1497 (5016-4812) | |
| 474-645, gnl|mm7|chrX (89590800-89590597) | |
| 474-645, gnl|Mm7|chrX (89590763-89590593) | |
| 474-645, gnl|monDom2|scaffold_48 (7865214-7865015) | |
| 474-645, gnl|oryCun1|scaffold_97480 (13506-13707) | |
| 474-645, gnl|panTro1|chrX (24674185-24674390) | |
| 474-645, gnl|rheMac2|chrX (21877645-21877851) | |
| 474-645, gnl|rn3|chrX (81631439-81631236) | |
| 474-645, gnl|tetNig1|chrUn_random (52957303-52957495) | |
| 474-645, gnl|xenTro1|scaffold_100 (802540-802734) | |
| 764-867, gnl|bosTau2|chrX (37976301-37976198) | |
| 764-867, gnl|canFam2|chrX (19625113-19625206) | |
| 764-867, gnl|canFam2|chrX (19625108-19625226) | |
| 764-867, gnl|danRer3|chr24 (10842822-10842729) | |
| 764-867, gnl|danRer3|chr24 (10842827-10842721) | |
| 764-867, gnl|dasNov1|scaffold_49073 (3420-3513) | |
| 764-867, gnl|dasNov1|scaffold_49073 (3420-3513) | |
| 764-867, gnl|echTel1|scaffold_169610 (6197-6306) | |
| 764-867, gnl|echTel1|scaffold_281329 (27962-28055) | |
| 764-867, gnl|fr1|chrUn (157268496-157268403) | |
| 764-867, gnl|fr1|chrUn (157268501-157268394) | |
| 764-867, gnl|galGal2|chr1 (111589841-111589760) | |
| 764-867, gnl|galGal2|chr1 (111589000-111588874) | |
| 764-867, gnl|hg17|chr12 (10550541-10550634) | |
| 764-867, gnl|hg17|chrX (23843767-23843885) | |
| 764-867, gnl|Hg17|chrX (23843766-23843868) | |
| 764-867, gnl|loxAfr1|scaffold_1497 (1343-1225) | |
| 764-867, gnl|loxAfr1|scaffold_48447 (1149-1226) | |
| 764-867, gnl|mm7|chrUn_random (2773515-2773422) | |
| 764-867, gnl|mm7|chrX (89587643-89587525) | |
| 764-867, gnl|Mm7|chrX (89587643-89587540) | |
| 764-867, gnl|monDom2|scaffold_48 (7863055-7862951) | |
| 764-867, gnl|monDom2|scaffold_66 (3912978-3912885) | |
| 764-867, gnl|oryCun1|scaffold_81796 (4515-4604) | |
| 764-867, gnl|oryCun1|scaffold_81796 (4506-4623) | |
| 764-867, gnl|panTro1|chrUn_random (36824550-36824643) | |
| 764-867, gnl|panTro1|chrUn_random (36824550-36824643) | |
| 764-867, gnl|rheMac2|chr4 (69781110-69781017) | |
| 764-867, gnl|rheMac2|chrX (21881300-21881418) | |
| 764-867, gnl|rn3|chrX (81627343-81627254) | |
| 764-867, gnl|rn3|chrX (81627352-81627234) | |
| 764-867, gnl|tetNig1|chrUn_random (52957845-52957938) | |
| 764-867, gnl|tetNig1|chrUn_random (52957840-52957958) | |
| 764-867, gnl|xenTro1|scaffold_100 (804265-804353) | |
| 764-867, gnl|xenTro1|scaffold_100 (804257-804360) | |
| 969-1783, gnl|bosTau2|chr28 (12225651-12224859) | |
| 969-1783, gnl|Hg17|chr12 (10550739-10551851) | |
| 969-1783, gnl|Mm7|chrUn_random (2773312-2771555) |
| Aligned organism(s): 76 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 129-259, gnl|bosTau2|chrX (37983065-37982935) | |
| 129-259, gnl|canFam2|chrX (19617689-19617820) | |
| 129-259, gnl|danRer3|chr24 (10850298-10850167) | |
| 129-259, gnl|dasNov1|scaffold_164414 (1077-1208) | |
| 129-259, gnl|echTel1|scaffold_281329 (27320-27451) | |
| 129-259, gnl|fr1|chrUn (157269783-157269652) | |
| 129-259, gnl|galGal2|chr1 (111593627-111593496) | |
| 129-259, gnl|hg17|chrX (23835192-23835323) | |
| 129-259, gnl|Hg17|chrX (23835188-23835322) | |
| 129-259, gnl|loxAfr1|scaffold_1497 (7930-7799) | |
| 129-259, gnl|mm7|chrX (89596320-89596189) | |
| 129-259, gnl|Mm7|chrX (89596318-89596188) | |
| 129-259, gnl|monDom2|scaffold_48 (7867690-7867559) | |
| 129-259, gnl|oryCun1|scaffold_97480 (10108-10239) | |
| 129-259, gnl|panTro1|chrX (24669228-24669359) | |
| 129-259, gnl|rheMac2|chrX (21872006-21872137) | |
| 129-259, gnl|rn3|chrX (81636797-81636666) | |
| 129-259, gnl|tetNig1|chrUn_random (52956730-52956861) | |
| 129-259, gnl|xenTro1|scaffold_100 (798754-798885) | |
| 474-645, gnl|bosTau2|chrX (37979130-37978960) | |
| 474-645, gnl|canFam2|chrX (19621310-19621503) | |
| 474-645, gnl|danRer3|chr24 (10846970-10846780) | |
| 474-645, gnl|dasNov1|scaffold_164414 (4465-4667) | |
| 474-645, gnl|echTel1|scaffold_169610 (3187-3398) | |
| 474-645, gnl|fr1|chrUn (157269189-157269006) | |
| 474-645, gnl|galGal2|chr1 (111591413-111591218) | |
| 474-645, gnl|hg17|chrX (23840150-23840355) | |
| 474-645, gnl|Hg17|chrX (23840187-23840357) | |
| 474-645, gnl|loxAfr1|scaffold_1497 (5016-4812) | |
| 474-645, gnl|mm7|chrX (89590800-89590597) | |
| 474-645, gnl|Mm7|chrX (89590763-89590593) | |
| 474-645, gnl|monDom2|scaffold_48 (7865214-7865015) | |
| 474-645, gnl|oryCun1|scaffold_97480 (13506-13707) | |
| 474-645, gnl|panTro1|chrX (24674185-24674390) | |
| 474-645, gnl|rheMac2|chrX (21877645-21877851) | |
| 474-645, gnl|rn3|chrX (81631439-81631236) | |
| 474-645, gnl|tetNig1|chrUn_random (52957303-52957495) | |
| 474-645, gnl|xenTro1|scaffold_100 (802540-802734) | |
| 764-867, gnl|bosTau2|chrX (37976301-37976198) | |
| 764-867, gnl|canFam2|chrX (19625113-19625206) | |
| 764-867, gnl|canFam2|chrX (19625108-19625226) | |
| 764-867, gnl|danRer3|chr24 (10842822-10842729) | |
| 764-867, gnl|danRer3|chr24 (10842827-10842721) | |
| 764-867, gnl|dasNov1|scaffold_49073 (3420-3513) | |
| 764-867, gnl|dasNov1|scaffold_49073 (3420-3513) | |
| 764-867, gnl|echTel1|scaffold_169610 (6197-6306) | |
| 764-867, gnl|echTel1|scaffold_281329 (27962-28055) | |
| 764-867, gnl|fr1|chrUn (157268496-157268403) | |
| 764-867, gnl|fr1|chrUn (157268501-157268394) | |
| 764-867, gnl|galGal2|chr1 (111589841-111589760) | |
| 764-867, gnl|galGal2|chr1 (111589000-111588874) | |
| 764-867, gnl|hg17|chr12 (10550541-10550634) | |
| 764-867, gnl|hg17|chrX (23843767-23843885) | |
| 764-867, gnl|Hg17|chrX (23843766-23843868) | |
| 764-867, gnl|loxAfr1|scaffold_1497 (1343-1225) | |
| 764-867, gnl|loxAfr1|scaffold_48447 (1149-1226) | |
| 764-867, gnl|mm7|chrUn_random (2773515-2773422) | |
| 764-867, gnl|mm7|chrX (89587643-89587525) | |
| 764-867, gnl|Mm7|chrX (89587643-89587540) | |
| 764-867, gnl|monDom2|scaffold_48 (7863055-7862951) | |
| 764-867, gnl|monDom2|scaffold_66 (3912978-3912885) | |
| 764-867, gnl|oryCun1|scaffold_81796 (4515-4604) | |
| 764-867, gnl|oryCun1|scaffold_81796 (4506-4623) | |
| 764-867, gnl|panTro1|chrUn_random (36824550-36824643) | |
| 764-867, gnl|panTro1|chrUn_random (36824550-36824643) | |
| 764-867, gnl|rheMac2|chr4 (69781110-69781017) | |
| 764-867, gnl|rheMac2|chrX (21881300-21881418) | |
| 764-867, gnl|rn3|chrX (81627343-81627254) | |
| 764-867, gnl|rn3|chrX (81627352-81627234) | |
| 764-867, gnl|tetNig1|chrUn_random (52957845-52957938) | |
| 764-867, gnl|tetNig1|chrUn_random (52957840-52957958) | |
| 764-867, gnl|xenTro1|scaffold_100 (804265-804353) | |
| 764-867, gnl|xenTro1|scaffold_100 (804257-804360) | |
| 969-1783, gnl|bosTau2|chr28 (12225651-12224859) | |
| 969-1783, gnl|Hg17|chr12 (10550739-10551851) | |
| 969-1783, gnl|Mm7|chrUn_random (2773312-2771555) |
| Expressed library(ies): 44 entry(ies) | More info |
| Expressed library(ies): 44 entry(ies) | Help | Less info |
| cbr (3.07141) | |
| spl (0.715922) | |
| mcp (0.682594) | |
| tbr (0.616713) | |
| aor (0.585823) | |
| fat (0.442282) | |
| fcc (0.39557) | |
| ova (0.387397) | |
| thg (0.380373) | |
| mgm (0.360685) | |
| gul (0.355177) | |
| fbs (0.350693) | |
| med (0.348756) | |
| vin (0.332557) | |
| cty (0.31224) | |
| sme (0.305437) | |
| liv (0.292569) | |
| lin (0.291206) | |
| tra (0.246184) | |
| pan (0.23596) | |
| mgp (0.230681) | |
| ecc (0.23007) | |
| hea (0.204499) | |
| jej (0.197844) | |
| col (0.195008) | |
| ldo (0.194005) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| ton (0.1755) | |
| cut (0.169924) | |
| nje (0.16592) | |
| nco (0.161734) | |
| mga (0.160205) | |
| eli (0.151814) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| ret (0.128733) | |
| sug (0.127291) | |
| ese (0.126502) | |
| bla (0.124347) | |
| eep (0.122564) |
| Expressed library(ies): 44 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbr (3.07141) | |
| spl (0.715922) | |
| mcp (0.682594) | |
| tbr (0.616713) | |
| aor (0.585823) | |
| fat (0.442282) | |
| fcc (0.39557) | |
| ova (0.387397) | |
| thg (0.380373) | |
| mgm (0.360685) | |
| gul (0.355177) | |
| fbs (0.350693) | |
| med (0.348756) | |
| vin (0.332557) | |
| cty (0.31224) | |
| sme (0.305437) | |
| liv (0.292569) | |
| lin (0.291206) | |
| tra (0.246184) | |
| pan (0.23596) | |
| mgp (0.230681) | |
| ecc (0.23007) | |
| hea (0.204499) | |
| jej (0.197844) | |
| col (0.195008) | |
| ldo (0.194005) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| ton (0.1755) | |
| cut (0.169924) | |
| nje (0.16592) | |
| nco (0.161734) | |
| mga (0.160205) | |
| eli (0.151814) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| ret (0.128733) | |
| sug (0.127291) | |
| ese (0.126502) | |
| bla (0.124347) | |
| eep (0.122564) |