Ss1.1-Mixn-0030a11.5
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GCGGCGGCAGCGGCAGCAGCGACGATGCTGGAGACCCTGCGCGAGCGGCTGCTGAGCGTG
CAGCAGGATTTCACCTCCGGGCTGAAGACTTTAAGTGACAAGTCAAGAGAAGTTAAAGTG
AAAAACAAACCAAGAACTGTTCCATATTTGCCAAAGTACTCTGCTGGACTAGAATTACTT
AGCAGGTATGAAGACACCTGGGCAGCCCTCCACCGAAGAGCCAAGGAGTGTGCACGTGCT
GGAGAGCTGGTGGACAGCGAAGTGGTTATGCTTTCTGCTCACTGGGAGAAGAAGCAGACC
AGCCTGCTCGAGCTGCAGCAACAGCTGCAGCAGCTTCCAGGCTTAATCGCAGATTTAGAA
TCCATGACAGCAAACCTGACTCATTTAGAGGCTAGTTTTGAGGAGGTAGAAAACCACCTG
CTGAATCTGGAGGATTTGTGTGGACAGTGTGAATTAGAAAGATACAAACACATGCAGTCC
CAACAACTGGAAAATTACAAGAAAAATAAGAGGAAGGAACTTGAAACCTTCAAAGCTGAG
CTCGATGTAGAGCACACCCAGAAGGTCCTGGAAATGGAGCAAGCCCAGCAGATGAAGCTG
AAGGAGCGGCAGAAGTTCTTTGAGGAAGCCTTCCAGCAGGACATGGAGCAGTACCTCTCC
ACGGGCTACCTGCAGATCGCCGAGAGGCGAGAGCCCATGGGCAGCATGTCGTCCATGGAG
GTGAACGTGGACATGCTGGAGCAGATGGACCTGATGGACATCTCTGACCAGGAGGCCCTG
GACGTCTTCCTGAATTCCGGCGGCGAGGATAACACAGCGCTGTCCCCTGTGCTCGGGCCT
GACGCGAGTCCCGGGCTGCACGGCGTCCGTCTGCAGGTTCCAGAGCCTTCCCGGCCACCG
GCCACGCCGGCCTCCCCGTCCTCAGCCGGTACCGACCCGGCCGCCCCGGACCCCAGCGAG
GGCGGCGAGTCCCCCGTGGTCCAGTCTGACGAGGAGGGAGTCGAGGTGGACACCGCCCTC
GCCACCCTCCACACCGACGACAGTGACTCGTAAGCCCGGCGCCCGCCCTCCGCCAGCTTC
CCGGGAAGGCGCGGTTGTGCGGCGGCCGCCGCGCAGGCTCGGGCTGCCGGGGGGCTCGGT
TTTCCACAGTTGCCCATAACGTGTGAGGAAGCGACTGAGAAGCCCTGAAAATAAAGTCTG
AGAACGTTCCTC
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Blue-coloured subsequences are predicted RNA structures by RNAz
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GCGGCGGCAGCGGCAGCAGCGACGATGCTGGAGACCCTGCGCGAGCGGCTGCTGAGCGTG
CAGCAGGATTTCACCTCCGGGCTGAAGACTTTAAGTGACAAGTCAAGAGAAGTTAAAGTG
AAAAACAAACCAAGAACTGTTCCATATTTGCCAAAGTACTCTGCTGGACTAGAATTACTT
AGCAGGTATGAAGACACCTGGGCAGCCCTCCACCGAAGAGCCAAGGAGTGTGCACGTGCT
GGAGAGCTGGTGGACAGCGAAGTGGTTATGCTTTCTGCTCACTGGGAGAAGAAGCAGACC
AGCCTGCTCGAGCTGCAGCAACAGCTGCAGCAGCTTCCAGGCTTAATCGCAGATTTAGAA
TCCATGACAGCAAACCTGACTCATTTAGAGGCTAGTTTTGAGGAGGTAGAAAACCACCTG
CTGAATCTGGAGGATTTGTGTGGACAGTGTGAATTAGAAAGATACAAACACATGCAGTCC
CAACAACTGGAAAATTACAAGAAAAATAAGAGGAAGGAACTTGAAACCTTCAAAGCTGAG
CTCGATGTAGAGCACACCCAGAAGGTCCTGGAAATGGAGCAAGCCCAGCAGATGAAGCTG
AAGGAGCGGCAGAAGTTCTTTGAGGAAGCCTTCCAGCAGGACATGGAGCAGTACCTCTCC
ACGGGCTACCTGCAGATCGCCGAGAGGCGAGAGCCCATGGGCAGCATGTCGTCCATGGAG
GTGAACGTGGACATGCTGGAGCAGATGGACCTGATGGACATCTCTGACCAGGAGGCCCTG
GACGTCTTCCTGAATTCCGGCGGCGAGGATAACACAGCGCTGTCCCCTGTGCTCGGGCCT
GACGCGAGTCCCGGGCTGCACGGCGTCCGTCTGCAGGTTCCAGAGCCTTCCCGGCCACCG
GCCACGCCGGCCTCCCCGTCCTCAGCCGGTACCGACCCGGCCGCCCCGGACCCCAGCGAG
GGCGGCGAGTCCCCCGTGGTCCAGTCTGACGAGGAGGGAGTCGAGGTGGACACCGCCCTC
GCCACCCTCCACACCGACGACAGTGACTCGTAAGCCCGGCGCCCGCCCTCCGCCAGCTTC
CCGGGAAGGCGCGGTTGTGCGGCGGCCGCCGCGCAGGCTCGGGCTGCCGGGGGGCTCGGT
TTTCCACAGTTGCCCATAACGTGTGAGGAAGCGACTGAGAAGCCCTGAAAATAAAGTCTG
AGAACGTTCCTC
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gi|56202829|emb|CAI21978.1| |
Protein identifier
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gi|56202829|emb|CAI21978.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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380-513, gnl|bosTau2|chr23 (36697951-36698084) |
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380-513, gnl|canFam2|chr35 (17828890-17829119) |
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380-513, gnl|danRer3|chr16 (28887422-28887633) |
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380-513, gnl|dasNov1|scaffold_33010 (13603-13378) |
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380-513, gnl|echTel1|scaffold_305729 (9559-9777) |
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380-513, gnl|hg17|chr6 (15723450-15723666) |
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380-513, gnl|Hg17|chr6 (15723609-15723476) |
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380-513, gnl|loxAfr1|scaffold_14794 (24054-23834) |
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380-513, gnl|mm7|chr13 (44419638-44419853) |
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380-513, gnl|Mm7|chr13 (44419793-44419660) |
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380-513, gnl|monDom2|scaffold_3 (104167870-104168075) |
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380-513, gnl|oryCun1|scaffold_203653 (356-560) |
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380-513, gnl|panTro1|chr5 (16091232-16091448) |
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380-513, gnl|rheMac2|chr4 (15584623-15584840) |
| |
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527-691, gnl|bosTau2|chr23 (36751809-36751973) |
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527-691, gnl|Hg17|chr6 (15641614-15641450) |
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527-691, gnl|Mm7|chr13 (44380775-44380611) |
| |
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835-1208, gnl|bosTau2|chr23 (36759396-36759777) |
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835-1208, gnl|Hg17|chr6 (15631430-15631020) |
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835-1208, gnl|Mm7|chr13 (44372050-44371677) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
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380-513, gnl|bosTau2|chr23 (36697951-36698084) |
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380-513, gnl|canFam2|chr35 (17828890-17829119) |
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380-513, gnl|danRer3|chr16 (28887422-28887633) |
|
380-513, gnl|dasNov1|scaffold_33010 (13603-13378) |
|
380-513, gnl|echTel1|scaffold_305729 (9559-9777) |
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380-513, gnl|hg17|chr6 (15723450-15723666) |
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380-513, gnl|Hg17|chr6 (15723609-15723476) |
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380-513, gnl|loxAfr1|scaffold_14794 (24054-23834) |
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380-513, gnl|mm7|chr13 (44419638-44419853) |
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380-513, gnl|Mm7|chr13 (44419793-44419660) |
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380-513, gnl|monDom2|scaffold_3 (104167870-104168075) |
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380-513, gnl|oryCun1|scaffold_203653 (356-560) |
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380-513, gnl|panTro1|chr5 (16091232-16091448) |
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380-513, gnl|rheMac2|chr4 (15584623-15584840) |
| |
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527-691, gnl|bosTau2|chr23 (36751809-36751973) |
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527-691, gnl|Hg17|chr6 (15641614-15641450) |
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527-691, gnl|Mm7|chr13 (44380775-44380611) |
| |
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835-1208, gnl|bosTau2|chr23 (36759396-36759777) |
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835-1208, gnl|Hg17|chr6 (15631430-15631020) |
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835-1208, gnl|Mm7|chr13 (44372050-44371677) |
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pla (0.534688) |
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jej (0.197844) |
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mcp (0.170648) |
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cag (0.151194) |
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lnt (0.142308) |
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cov (0.132153) |
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ese (0.126502) |
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pla (0.534688) |
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jej (0.197844) |
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mcp (0.170648) |
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cag (0.151194) |
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lnt (0.142308) |
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cov (0.132153) |
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ese (0.126502) |