Non-Coding RNA Search

Ss1.1-Mixn-0030b15.5

Sequence:


               
               GGGAGCGGCCTGGCTCCGCTGCCCGGGCTCCCGCCCTCGGCCGCTGCCCACGGGGCCGCG
CTGCTTAGCCACTGGGACCCCACACTCAGCTCCGACTGGGACGGCGAGCGAACCGCGCCG
CAGTGTCTACTCCGGATCAAGCGGGATATCATGTCCATTTATAAGGAGCCTCCTCCAGGA
ATGTTCGTTGTACCTGATACTGTTGACATGACTAAGATTCATGCATTGATCACAGGCCCA
TTTGACACTCCTTATGAAGGGGGTTTCTTCCTGTTCGTGTTTCGGTGTCCGCCCGACTAT
CCCATCCACCCACCTCGGGTCAAACTGATGACAACGGGCAATAACACAGTGAGGTTTAAC
CCCAACTTCTACCGCAATGGGAAAGTCTGCTTGAGTATTCTAGGTACGTGGACTGGCCCT
GCCTGGAGCCCAGCCCAGAGCATCTCTTCTGTGCTCATCTCCATCCAGTCCCTGATGACT
GAGAACCCCTATCACAATGAACCCGGCTTTGAGCAGGAGAGACATCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAGCGGCCTGGCTCCGCTGCCCGGGCTCCCGCCCTCGGCCGCTGCCCACGGGGCCGCG
CTGCTTAGCCACTGGGACCCCACACTCAGCTCCGACTGGGACGGCGAGCGAACCGCGCCG
CAGTGTCTACTCCGGATCAAGCGGGATATCATGTCCATTTATAAGGAGCCTCCTCCAGGA
ATGTTCGTTGTACCTGATACTGTTGACATGACTAAGATTCATGCATTGATCACAGGCCCA
TTTGACACTCCTTATGAAGGGGGTTTCTTCCTGTTCGTGTTTCGGTGTCCGCCCGACTAT
CCCATCCACCCACCTCGGGTCAAACTGATGACAACGGGCAATAACACAGTGAGGTTTAAC
CCCAACTTCTACCGCAATGGGAAAGTCTGCTTGAGTATTCTAGGTACGTGGACTGGCCCT
GCCTGGAGCCCAGCCCAGAGCATCTCTTCTGTGCTCATCTCCATCCAGTCCCTGATGACT
GAGAACCCCTATCACAATGAACCCGGCTTTGAGCAGGAGAGACATCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61865888|ref|XP_597364.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61865888|ref|XP_597364.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               254-373, - strand, RNAz p=0.858768

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               254-373, - strand, RNAz p=0.858768

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               215-412, gnl|bosTau2|chr19 (30402732-30402534)
               

               
               215-412, gnl|canFam2|chr9 (28466027-28466238)
               

               
               215-412, gnl|danRer3|chr3 (16281062-16281259)
               

               
               215-412, gnl|dasNov1|scaffold_11618 (5802-6013)
               

               
               215-412, gnl|echTel1|scaffold_287694 (12416-12254)
               

               
               215-412, gnl|fr1|chrUn (202991382-202991187)
               

               
               215-412, gnl|galGal2|chr27 (2340668-2340463)
               

               
               215-412, gnl|hg17|chr17 (44345193-44345404)
               

               
               215-412, gnl|Hg17|chr17 (44345193-44345391)
               

               
               215-412, gnl|loxAfr1|scaffold_18766 (41237-41026)
               

               
               215-412, gnl|mm7|chr11 (96170167-96169956)
               

               
               215-412, gnl|Mm7|chr11 (96170165-96169967)
               

               
               215-412, gnl|monDom2|scaffold_18 (45212237-45212026)
               

               
               215-412, gnl|oryCun1|scaffold_180807 (27356-27145)
               

               
               215-412, gnl|panTro1|chr19_random (43295028-43295239)
               

               
               215-412, gnl|rheMac2|chr16 (33146742-33146953)
               

               
               215-412, gnl|rn3|chr10 (84791306-84791095)
               

               
               215-412, gnl|tetNig1|chrUn_random (38208766-38208961)
               

               
               215-412, gnl|xenTro1|scaffold_329 (719216-719433)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               215-412, gnl|bosTau2|chr19 (30402732-30402534)
               

               
               215-412, gnl|canFam2|chr9 (28466027-28466238)
               

               
               215-412, gnl|danRer3|chr3 (16281062-16281259)
               

               
               215-412, gnl|dasNov1|scaffold_11618 (5802-6013)
               

               
               215-412, gnl|echTel1|scaffold_287694 (12416-12254)
               

               
               215-412, gnl|fr1|chrUn (202991382-202991187)
               

               
               215-412, gnl|galGal2|chr27 (2340668-2340463)
               

               
               215-412, gnl|hg17|chr17 (44345193-44345404)
               

               
               215-412, gnl|Hg17|chr17 (44345193-44345391)
               

               
               215-412, gnl|loxAfr1|scaffold_18766 (41237-41026)
               

               
               215-412, gnl|mm7|chr11 (96170167-96169956)
               

               
               215-412, gnl|Mm7|chr11 (96170165-96169967)
               

               
               215-412, gnl|monDom2|scaffold_18 (45212237-45212026)
               

               
               215-412, gnl|oryCun1|scaffold_180807 (27356-27145)
               

               
               215-412, gnl|panTro1|chr19_random (43295028-43295239)
               

               
               215-412, gnl|rheMac2|chr16 (33146742-33146953)
               

               
               215-412, gnl|rn3|chr10 (84791306-84791095)
               

               
               215-412, gnl|tetNig1|chrUn_random (38208766-38208961)
               

               
               215-412, gnl|xenTro1|scaffold_329 (719216-719433)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	215-412, gnl\|bosTau2\|chr19 (30402732-30402534)
	215-412, gnl\|canFam2\|chr9 (28466027-28466238)
	215-412, gnl\|danRer3\|chr3 (16281062-16281259)
	215-412, gnl\|dasNov1\|scaffold_11618 (5802-6013)
	215-412, gnl\|echTel1\|scaffold_287694 (12416-12254)
	215-412, gnl\|fr1\|chrUn (202991382-202991187)
	215-412, gnl\|galGal2\|chr27 (2340668-2340463)
	215-412, gnl\|hg17\|chr17 (44345193-44345404)
	215-412, gnl\|Hg17\|chr17 (44345193-44345391)
	215-412, gnl\|loxAfr1\|scaffold_18766 (41237-41026)
	215-412, gnl\|mm7\|chr11 (96170167-96169956)
	215-412, gnl\|Mm7\|chr11 (96170165-96169967)
	215-412, gnl\|monDom2\|scaffold_18 (45212237-45212026)
	215-412, gnl\|oryCun1\|scaffold_180807 (27356-27145)
	215-412, gnl\|panTro1\|chr19_random (43295028-43295239)
	215-412, gnl\|rheMac2\|chr16 (33146742-33146953)
	215-412, gnl\|rn3\|chr10 (84791306-84791095)
	215-412, gnl\|tetNig1\|chrUn_random (38208766-38208961)
	215-412, gnl\|xenTro1\|scaffold_329 (719216-719433)