Non-Coding RNA Search

Ss1.1-Mixn-0030b16.5

Sequence:


               
               TCAGCGAGCTCTCGCTAAAACTGGAGCTGAATCTATCAGTTTGCTTGAGTTGTGTCGAAA
CACGAACAGAAAGCAAGCTGCAGCAAAGTTCTACAGCTTCTTGGTTCTTAAGAAGCAGCA
AGCAATTGAGCTGACCCAGGAAGAACCGTACAGTGACATCGTTGCAACACCTGGACCAAG
GTTCCACATTATTTGAGCAGCTAGAAGCATTATAGCTAGTGTTCATTTCACTAGTGTGTA
CAAATTGCCCCCATGTGTAGGGCACACAAAACCCTTCAAGAAAATCTAGATTTTTGTCTG
TACAAAGTCTCTGCCTTTTTCATTTTTTTCCCCAGTATTTTAAATGTATCAATTTCATCT
TTAAGGGAAACTGCCTGTGTACGGTGTTTGTGTTCAAGCACCCCCAAGGACCCCAAGGTT
GTTTCAACAGTCCAGAACAGATGTGTACTTGTAATAATGTTGAGTAGCAGTGGAAAGTCA
GGGGTAATTATTCTTAGTTCTCAGTTTCTACATTGGAAAGGGGAACTTTTTGGGGAAAAA
TGCCTGACAGTTAAGAACTATGGTATGAATCTTTGAAATTGTCTTTTCCCATCAGTAACA
CCTAGCATTAGTACCATTGTGCTTTAGGGGTGGTGCCCAAGATAGACATTGTCTTCTTGA
AATATGTTTTAAAAGTGTAATTCCACAGTGACCAAGGGGGTGTGTGAAATTGTACAGTAA
CTAATCCCCTTCAACTACAAACAAGATAGGACTTGGTTTAAAGTGCCCTCTTTTATAAAT
CATTCCATTTGAAACTTTTTAATGAACCTTATTATCCTGAAATCTGTTGTTTTTAGTGAG
GCTCTAAAATGAGCAAAAATAGACTTTTTAGATTAGAATGGATATAAGAGGCATTTATAA
CTTTCCAGGAGCTATAAATCAAAGTTTTAAAAAGATGTTTGGCTATATTTGAATATTCAA
GATCATGAAAACAGAAATTGCTATGCCAGCTGAAAGGACAGGCTGATGGGAAATCGTACA
ACTGGTTGACTTAACCTTTAAGCAGACAGTGCTGTAAAAACTAATGGCTTCTCTGATATT
TATTATAAATTTTAAGTACTGATATTTTTTCCAATGCTTGCACACTCCTGTGTTTGGAAC
TTTAATAGCTTTGCAACAGAAATCCAGTATCCGGTTTCCTATAATTTAAGTAAAAAACAT
ATCCAAATAAAGGCTTTATTATTAACAGACCAGATAGCACCAGAAATTATGTGACTGTTA
TGATTATCAAAACATGTCTTAACTTTTTAGGGCAAAATTACACACTGAAAGTTCTAGCTT
AAGTGTTGGCACTTTTGTGGGGAAAAAAAAAAATCACTCAGACTTCAGTGTATACCCAGT
AATTTAAAATTATGTGAGATGTTTTAAATTTGTGAAGTCGTAATTACTGTTTTGATGATT
CAGTTTCTTGAGAATGGTAATTGTATAAAATTGCTATTGCCGCTTTATTTTCAATATGAT
GTGCCTGTAAACCATGGATTTTTCTCCCTTTGTAAAAAGACATTGTAGATAATTGAATGT
TTGATTATAGAAAGGTCATTAGTTACTTGTTACACATTTTGTTAGTCTGGTTTTTGTTGC
TTATCGGGTTTAATATTGTTCTTGAAAATAGTTGATGCTATGTTATGTATAACTTTTCTA
ATAAAAGTTGTGTTATAAGCTAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAGCGAGCTCTCGCTAAAACTGGAGCTGAATCTATCAGTTTGCTTGAGTTGTGTCGAAA
CACGAACAGAAAGCAAGCTGCAGCAAAGTTCTACAGCTTCTTGGTTCTTAAGAAGCAGCA
AGCAATTGAGCTGACCCAGGAAGAACCGTACAGTGACATCGTTGCAACACCTGGACCAAG
GTTCCACATTATTTGAGCAGCTAGAAGCATTATAGCTAGTGTTCATTTCACTAGTGTGTA
CAAATTGCCCCCATGTGTAGGGCACACAAAACCCTTCAAGAAAATCTAGATTTTTGTCTG
TACAAAGTCTCTGCCTTTTTCATTTTTTTCCCCAGTATTTTAAATGTATCAATTTCATCT
TTAAGGGAAACTGCCTGTGTACGGTGTTTGTGTTCAAGCACCCCCAAGGACCCCAAGGTT
GTTTCAACAGTCCAGAACAGATGTGTACTTGTAATAATGTTGAGTAGCAGTGGAAAGTCA
GGGGTAATTATTCTTAGTTCTCAGTTTCTACATTGGAAAGGGGAACTTTTTGGGGAAAAA
TGCCTGACAGTTAAGAACTATGGTATGAATCTTTGAAATTGTCTTTTCCCATCAGTAACA
CCTAGCATTAGTACCATTGTGCTTTAGGGGTGGTGCCCAAGATAGACATTGTCTTCTTGA
AATATGTTTTAAAAGTGTAATTCCACAGTGACCAAGGGGGTGTGTGAAATTGTACAGTAA
CTAATCCCCTTCAACTACAAACAAGATAGGACTTGGTTTAAAGTGCCCTCTTTTATAAAT
CATTCCATTTGAAACTTTTTAATGAACCTTATTATCCTGAAATCTGTTGTTTTTAGTGAG
GCTCTAAAATGAGCAAAAATAGACTTTTTAGATTAGAATGGATATAAGAGGCATTTATAA
CTTTCCAGGAGCTATAAATCAAAGTTTTAAAAAGATGTTTGGCTATATTTGAATATTCAA
GATCATGAAAACAGAAATTGCTATGCCAGCTGAAAGGACAGGCTGATGGGAAATCGTACA
ACTGGTTGACTTAACCTTTAAGCAGACAGTGCTGTAAAAACTAATGGCTTCTCTGATATT
TATTATAAATTTTAAGTACTGATATTTTTTCCAATGCTTGCACACTCCTGTGTTTGGAAC
TTTAATAGCTTTGCAACAGAAATCCAGTATCCGGTTTCCTATAATTTAAGTAAAAAACAT
ATCCAAATAAAGGCTTTATTATTAACAGACCAGATAGCACCAGAAATTATGTGACTGTTA
TGATTATCAAAACATGTCTTAACTTTTTAGGGCAAAATTACACACTGAAAGTTCTAGCTT
AAGTGTTGGCACTTTTGTGGGGAAAAAAAAAAATCACTCAGACTTCAGTGTATACCCAGT
AATTTAAAATTATGTGAGATGTTTTAAATTTGTGAAGTCGTAATTACTGTTTTGATGATT
CAGTTTCTTGAGAATGGTAATTGTATAAAATTGCTATTGCCGCTTTATTTTCAATATGAT
GTGCCTGTAAACCATGGATTTTTCTCCCTTTGTAAAAAGACATTGTAGATAATTGAATGT
TTGATTATAGAAAGGTCATTAGTTACTTGTTACACATTTTGTTAGTCTGGTTTTTGTTGC
TTATCGGGTTTAATATTGTTCTTGAAAATAGTTGATGCTATGTTATGTATAACTTTTCTA
ATAAAAGTTGTGTTATAAGCTAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|12718183|emb|CAC28621.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12718183|emb|CAC28621.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1-159, - strand, RNAz p=0.782391
               

               
               200-316, - strand, RNAz p=0.726896

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-159, - strand, RNAz p=0.782391
               

               
               200-316, - strand, RNAz p=0.726896

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1706, gnl|bosTau2|chr14 (29573021-29574698)
               

               
               1-1706, gnl|Hg17|chr8 (117929115-117927352)
               

               
               1-1706, gnl|Mm7|chr15 (52018370-52016721)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1706, gnl|bosTau2|chr14 (29573021-29574698)
               

               
               1-1706, gnl|Hg17|chr8 (117929115-117927352)
               

               
               1-1706, gnl|Mm7|chr15 (52018370-52016721)

Expressed library(ies): 35 entry(ies)

More info

Expressed library(ies): 35 entry(ies)

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               tra (1.10783)
               

               
               liv (1.02399)
               

               
               kid (0.648677)
               

               
               sme (0.610874)
               

               
               lin (0.582411)
               

               
               fce (0.543183)
               

               
               fbs (0.526039)
               

               
               ret (0.514933)
               

               
               thg (0.507164)
               

               
               fco (0.471624)
               

               
               amn (0.417711)
               

               
               elu (0.385356)
               

               
               sag (0.36543)
               

               
               eru (0.360144)
               

               
               nco (0.323468)
               

               
               eli (0.303628)
               

               
               pla (0.267344)
               

               
               mgp (0.230681)
               

               
               cbl (0.229595)
               

               
               mas (0.210305)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 35 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (1.10783)
               

               
               liv (1.02399)
               

               
               kid (0.648677)
               

               
               sme (0.610874)
               

               
               lin (0.582411)
               

               
               fce (0.543183)
               

               
               fbs (0.526039)
               

               
               ret (0.514933)
               

               
               thg (0.507164)
               

               
               fco (0.471624)
               

               
               amn (0.417711)
               

               
               elu (0.385356)
               

               
               sag (0.36543)
               

               
               eru (0.360144)
               

               
               nco (0.323468)
               

               
               eli (0.303628)
               

               
               pla (0.267344)
               

               
               mgp (0.230681)
               

               
               cbl (0.229595)
               

               
               mas (0.210305)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	1-159, - strand, RNAz p=0.782391
	200-316, - strand, RNAz p=0.726896

	1-1706, gnl\|bosTau2\|chr14 (29573021-29574698)
	1-1706, gnl\|Hg17\|chr8 (117929115-117927352)
	1-1706, gnl\|Mm7\|chr15 (52018370-52016721)

	tra (1.10783)
	liv (1.02399)
	kid (0.648677)
	sme (0.610874)
	lin (0.582411)
	fce (0.543183)
	fbs (0.526039)
	ret (0.514933)
	thg (0.507164)
	fco (0.471624)
	amn (0.417711)
	elu (0.385356)
	sag (0.36543)
	eru (0.360144)
	nco (0.323468)
	eli (0.303628)
	pla (0.267344)
	mgp (0.230681)
	cbl (0.229595)
	mas (0.210305)
	mgm (0.180343)
	gul (0.177588)
	sin (0.174948)
	eye (0.170503)
	mga (0.160205)
	spl (0.143184)
	hyp (0.142837)
	lnt (0.142308)
	ste (0.135208)
	ute (0.132784)
	ova (0.129132)
	med (0.116252)
	cty (0.10408)
	eje (0.0988338)
	ldo (0.0970026)