Non-Coding RNA Search

Ss1.1-Mixn-0030c07.5

Sequence:


               
               TTTTTTTTTTTTTTGTAAATCACAAAACACCTCAACTAGCAAGAACTGAGGGGAGGGCAC
TTCTGAGTGCTTTTCCATTGTTTTTAATGTTGTGTGTGATTTTAGCTGAGGAGAGGGCGC
CTCATCTAGGTACTGTTTGCACATGATACAGCAAAAGGAGTTCACTGCAATACTGTCTTT
GAATACTGTTTCAATACTGGGCGTTTAAAGGACAAATAGCTGCTAGAAATCAGGGGTAAA
TGTAACTGTTCAGAAAACACGTCAGAACATTGGGGTTTTTAAGAGTCCTGGTTGTAACTT
CCTACCCAGCCCGGCCACCAATAACGCCACCAGTAATGCCTGTGCTCACCGGGACCCAGG
CTTTCAGCAAGGGGACACTCCTTGGTGGCGTTTTGAATTACAGATTCGTTTATCTGCATT
TTCTTGCTATTTGAAATGGTCCATCAACTTCCCACAAACTGAGGAATGAATTCCACGAGC
CTATTCTGAAAATGTGGACAGAAACACTCGCTCGTCCTTTAAAGGAGATCACCAGCACAC
TCGTTAACAAGTCCCGTTTGCTTGTCTTTTTTTGTGCGTAATAAAGTCCACTGACCAAGT
GACCCTGAAGAGGGGCTGCCTGGGGCTCCTGTTTTTTAGCTGCTGTTCCTCTTCAGCTCC
GACCACGTTGCTGTGTGATTATCTCAATTGGTTTTAATTGAGGCAGAAACTGAAGCTCTA
CCAATGAACTGTTTAAAAATAAGACACACTTTTGTATTAAAATTGCTTGCAGTAACGAAA
ATTTTGTATTTCCTGCTTTTCTTCTCAACCATCACCTTATATATAACATACTACTCTGGG
ATATGATTGTGTTGTAGGTACTTCGCTGCATTGTTCAAATCCAGATATCCTGATGGATAA
ATTATGGAGCTCATTAATAGATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTGTAAATCACAAAACACCTCAACTAGCAAGAACTGAGGGGAGGGCAC
TTCTGAGTGCTTTTCCATTGTTTTTAATGTTGTGTGTGATTTTAGCTGAGGAGAGGGCGC
CTCATCTAGGTACTGTTTGCACATGATACAGCAAAAGGAGTTCACTGCAATACTGTCTTT
GAATACTGTTTCAATACTGGGCGTTTAAAGGACAAATAGCTGCTAGAAATCAGGGGTAAA
TGTAACTGTTCAGAAAACACGTCAGAACATTGGGGTTTTTAAGAGTCCTGGTTGTAACTT
CCTACCCAGCCCGGCCACCAATAACGCCACCAGTAATGCCTGTGCTCACCGGGACCCAGG
CTTTCAGCAAGGGGACACTCCTTGGTGGCGTTTTGAATTACAGATTCGTTTATCTGCATT
TTCTTGCTATTTGAAATGGTCCATCAACTTCCCACAAACTGAGGAATGAATTCCACGAGC
CTATTCTGAAAATGTGGACAGAAACACTCGCTCGTCCTTTAAAGGAGATCACCAGCACAC
TCGTTAACAAGTCCCGTTTGCTTGTCTTTTTTTGTGCGTAATAAAGTCCACTGACCAAGT
GACCCTGAAGAGGGGCTGCCTGGGGCTCCTGTTTTTTAGCTGCTGTTCCTCTTCAGCTCC
GACCACGTTGCTGTGTGATTATCTCAATTGGTTTTAATTGAGGCAGAAACTGAAGCTCTA
CCAATGAACTGTTTAAAAATAAGACACACTTTTGTATTAAAATTGCTTGCAGTAACGAAA
ATTTTGTATTTCCTGCTTTTCTTCTCAACCATCACCTTATATATAACATACTACTCTGGG
ATATGATTGTGTTGTAGGTACTTCGCTGCATTGTTCAAATCCAGATATCCTGATGGATAA
ATTATGGAGCTCATTAATAGATTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               321-433, + strand, RNAz p=0.998983

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               321-433, + strand, RNAz p=0.998983

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

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               326-422, DG14-116m24 DG14-muscle Canis familiaris cDNA 3', mRNA sequence 
(gb|CO708754.1|), blast E-value=0.000000000000002, identity=86.6% 
               

               
               326-422, DG14-17i4 DG14-muscle Canis familiaris cDNA 3', mRNA sequence 
(gb|CO711978.1|), blast E-value=0.000000000000002, identity=86.6% 
               

               
               326-422, nad29c04.y1 Dog eye cornea. Unnormalized (nad) Canis familiaris 
(gb|DN873858.1|), blast E-value=0.000000000000002, identity=86.6% 
               

               
               326-422, DR010009B20D12 Canine normalized retinal cDNA library Canis 
(gb|DT538237.1|), blast E-value=0.000000000000002, identity=86.6% 
               

               
               326-422, DR010024A20E08 Canine normalized retinal cDNA library Canis 
(gb|DT541370.1|), blast E-value=0.000000000000002, identity=86.6% 
               

               
               321-420, POSM0605007_G17R porcine skeletal muscle cDNA library (PoSM) Sus 
(gb|DV897882.1|), blast E-value=0, identity=99%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               326-422, DG14-116m24 DG14-muscle Canis familiaris cDNA 3', mRNA sequence 
(gb|CO708754.1|), blast E-value=0.000000000000002, identity=86.6% 
               

               
               326-422, DG14-17i4 DG14-muscle Canis familiaris cDNA 3', mRNA sequence 
(gb|CO711978.1|), blast E-value=0.000000000000002, identity=86.6% 
               

               
               326-422, nad29c04.y1 Dog eye cornea. Unnormalized (nad) Canis familiaris 
(gb|DN873858.1|), blast E-value=0.000000000000002, identity=86.6% 
               

               
               326-422, DR010009B20D12 Canine normalized retinal cDNA library Canis 
(gb|DT538237.1|), blast E-value=0.000000000000002, identity=86.6% 
               

               
               326-422, DR010024A20E08 Canine normalized retinal cDNA library Canis 
(gb|DT541370.1|), blast E-value=0.000000000000002, identity=86.6% 
               

               
               321-420, POSM0605007_G17R porcine skeletal muscle cDNA library (PoSM) Sus 
(gb|DV897882.1|), blast E-value=0, identity=99%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               8-924, gnl|bosTau2|chr3 (73136199-73135286)
               

               
               8-924, gnl|Hg17|chr1 (39621003-39621893)
               

               
               8-924, gnl|Mm7|chr4 (122795099-122794219)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-924, gnl|bosTau2|chr3 (73136199-73135286)
               

               
               8-924, gnl|Hg17|chr1 (39621003-39621893)
               

               
               8-924, gnl|Mm7|chr4 (122795099-122794219)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               aor (0.585823)
               

               
               elu (0.385356)
               

               
               fce (0.271592)
               

               
               clu (0.239292)
               

               
               sag (0.182715)
               

               
               hlv (0.139256)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.585823)
               

               
               elu (0.385356)
               

               
               fce (0.271592)
               

               
               clu (0.239292)
               

               
               sag (0.182715)
               

               
               hlv (0.139256)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

	326-422, DG14-116m24 DG14-muscle Canis familiaris cDNA 3', mRNA sequence (gb\|CO708754.1\|), blast E-value=0.000000000000002, identity=86.6%
	326-422, DG14-17i4 DG14-muscle Canis familiaris cDNA 3', mRNA sequence (gb\|CO711978.1\|), blast E-value=0.000000000000002, identity=86.6%
	326-422, nad29c04.y1 Dog eye cornea. Unnormalized (nad) Canis familiaris (gb\|DN873858.1\|), blast E-value=0.000000000000002, identity=86.6%
	326-422, DR010009B20D12 Canine normalized retinal cDNA library Canis (gb\|DT538237.1\|), blast E-value=0.000000000000002, identity=86.6%
	326-422, DR010024A20E08 Canine normalized retinal cDNA library Canis (gb\|DT541370.1\|), blast E-value=0.000000000000002, identity=86.6%
	321-420, POSM0605007_G17R porcine skeletal muscle cDNA library (PoSM) Sus (gb\|DV897882.1\|), blast E-value=0, identity=99%

	8-924, gnl\|bosTau2\|chr3 (73136199-73135286)
	8-924, gnl\|Hg17\|chr1 (39621003-39621893)
	8-924, gnl\|Mm7\|chr4 (122795099-122794219)

	aor (0.585823)
	elu (0.385356)
	fce (0.271592)
	clu (0.239292)
	sag (0.182715)
	hlv (0.139256)
	kid (0.129735)
	ova (0.129132)
	thg (0.126791)
	eru (0.120048)
	med (0.116252)
	ecc (0.115035)
	jca (0.11396)
	spc (0.113366)