Ss1.1-Mixn-0030c14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCGGCGGACAGGCGGGCGCTTTGCGGTTTGAATGGCTGCGGGCCCGGGCCCTCGGCTCA CCTGAGGACCGGCCGCCCAGGTGTGCACTATGCCGTCGGGAGGCGACCAGTCGCCGCCGC CCCCTCCTCCCCCTCCGGCGGCGGCGGCCTCGGACGAGGAGGAGGAAGACGATGGCGAGG CGGAGGACGCCGCGCAGCCTTCTCGGTCGCCAGCCCCTCAGACCCAGCAACGGTTTGAAG AGCTGTGCAGCCGACTGAACATGGACGAGGCGGCGCGGGCGGAGGCCTGGGACAGCTACC GGAGCATGAGCGAGAGCTACACGCTGGAGGGAAATGATCTTCATTGGTTAGCATGTGCCT TATACGTGGCTTGCAGAAAATCTGTGCCAACTGTAAGCAAAGGAACAGTTGAGGGAAACT ATGTATCTTTAACCAGAATCCTGAGATGTTCAGAGCAGAGCTTAATTGAATTTTTTAACA AGATGAAGAAGTGGGAAGACATGGCTAATCTACCCCCACATTTCAGAGAACGTACTGAGA GATTAGAAAGAAACTTCACTGTTTCTGCTGTAATTTTTAAGAAGTATGAACCCATTTTTC AGGACATTTTTAAATATCCCCAAGAGGAGCAGCCTCGTCAACAAAGAGGAAGAAAACAGC GGTATGTTTTTATATTTATTAAGCAGGAAGGCGCATGTGTCTGTCTCTGCTGCAGTTTTG ATCCCTCAGTTTATTCTGCCAGTCTGAAGAAAGAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCGGCGGACAGGCGGGCGCTTTGCGGTTTGAATGGCTGCGGGCCCGGGCCCTCGGCTCA CCTGAGGACCGGCCGCCCAGGTGTGCACTATGCCGTCGGGAGGCGACCAGTCGCCGCCGC CCCCTCCTCCCCCTCCGGCGGCGGCGGCCTCGGACGAGGAGGAGGAAGACGATGGCGAGG CGGAGGACGCCGCGCAGCCTTCTCGGTCGCCAGCCCCTCAGACCCAGCAACGGTTTGAAG AGCTGTGCAGCCGACTGAACATGGACGAGGCGGCGCGGGCGGAGGCCTGGGACAGCTACC GGAGCATGAGCGAGAGCTACACGCTGGAGGGAAATGATCTTCATTGGTTAGCATGTGCCT TATACGTGGCTTGCAGAAAATCTGTGCCAACTGTAAGCAAAGGAACAGTTGAGGGAAACT ATGTATCTTTAACCAGAATCCTGAGATGTTCAGAGCAGAGCTTAATTGAATTTTTTAACA AGATGAAGAAGTGGGAAGACATGGCTAATCTACCCCCACATTTCAGAGAACGTACTGAGA GATTAGAAAGAAACTTCACTGTTTCTGCTGTAATTTTTAAGAAGTATGAACCCATTTTTC AGGACATTTTTAAATATCCCCAAGAGGAGCAGCCTCGTCAACAAAGAGGAAGAAAACAGC GGTATGTTTTTATATTTATTAAGCAGGAAGGCGCATGTGTCTGTCTCTGCTGCAGTTTTG ATCCCTCAGTTTATTCTGCCAGTCTGAAGAAAGAAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 552-668, - strand, RNAz p=0.763031 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 552-668, - strand, RNAz p=0.763031 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 2-330, gnl|bosTau2|chr18 (21113350-21113678) | |
| 2-330, gnl|Hg17|chr16 (52025882-52026210) | |
| 2-330, gnl|Mm7|chr8 (89662657-89662976) | |
| 459-668, gnl|bosTau2|chr18 (21120279-21120488) | |
| 459-668, gnl|canFam2|chr2 (65189482-65189288) | |
| 459-668, gnl|danRer3|chrUn (35681531-35681314) | |
| 459-668, gnl|dasNov1|scaffold_7164 (92545-92739) | |
| 459-668, gnl|echTel1|scaffold_299423 (48600-48797) | |
| 459-668, gnl|fr1|chrUn (123425706-123425498) | |
| 459-668, gnl|galGal2|chrUn (51050487-51050674) | |
| 459-668, gnl|hg17|chr16 (52034051-52034245) | |
| 459-668, gnl|Hg17|chr16 (52034069-52034290) | |
| 459-668, gnl|loxAfr1|scaffold_3652 (82481-82287) | |
| 459-668, gnl|mm7|chr8 (89668463-89668658) | |
| 459-668, gnl|Mm7|chr8 (89668482-89668690) | |
| 459-668, gnl|monDom2|scaffold_35 (19126073-19126269) | |
| 459-668, gnl|oryCun1|scaffold_183848 (10671-10865) | |
| 459-668, gnl|panTro1|chr18 (46075431-46075625) | |
| 459-668, gnl|rheMac2|chr10 (27390112-27390301) | |
| 459-668, gnl|rn3|chr19 (17092484-17092291) | |
| 459-668, gnl|tetNig1|chrUn_random (12023183-12023360) | |
| 459-668, gnl|xenTro1|scaffold_276 (926146-925953) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-330, gnl|bosTau2|chr18 (21113350-21113678) | |
| 2-330, gnl|Hg17|chr16 (52025882-52026210) | |
| 2-330, gnl|Mm7|chr8 (89662657-89662976) | |
| 459-668, gnl|bosTau2|chr18 (21120279-21120488) | |
| 459-668, gnl|canFam2|chr2 (65189482-65189288) | |
| 459-668, gnl|danRer3|chrUn (35681531-35681314) | |
| 459-668, gnl|dasNov1|scaffold_7164 (92545-92739) | |
| 459-668, gnl|echTel1|scaffold_299423 (48600-48797) | |
| 459-668, gnl|fr1|chrUn (123425706-123425498) | |
| 459-668, gnl|galGal2|chrUn (51050487-51050674) | |
| 459-668, gnl|hg17|chr16 (52034051-52034245) | |
| 459-668, gnl|Hg17|chr16 (52034069-52034290) | |
| 459-668, gnl|loxAfr1|scaffold_3652 (82481-82287) | |
| 459-668, gnl|mm7|chr8 (89668463-89668658) | |
| 459-668, gnl|Mm7|chr8 (89668482-89668690) | |
| 459-668, gnl|monDom2|scaffold_35 (19126073-19126269) | |
| 459-668, gnl|oryCun1|scaffold_183848 (10671-10865) | |
| 459-668, gnl|panTro1|chr18 (46075431-46075625) | |
| 459-668, gnl|rheMac2|chr10 (27390112-27390301) | |
| 459-668, gnl|rn3|chr19 (17092484-17092291) | |
| 459-668, gnl|tetNig1|chrUn_random (12023183-12023360) | |
| 459-668, gnl|xenTro1|scaffold_276 (926146-925953) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| tes (0.207814) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| cje (0.165235) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| cje (0.165235) |