Non-Coding RNA Search

Ss1.1-Mixn-0030d08.5

Sequence:


               
               TGGGGACTGCTCTTCTGCCAATCTGCTTCTAGGAGGAGGCATGGTGCTGGCAGTGGCTGG
TGACCACCTTGGTGCCGAGGGCCGCTCTGTGGCTGGCCAGGCGGTGGTGCTGGTGGTTGC
GGTGACCATCCTCATCGTGGCTGTTTTCACAACCAACACTTATGGAATGTGGGGGGGGGT
GATGCTGGGTGCTGCAGGCCTCCTGAGCCGGCTGGAGGAGGACAGACTGCTGCTGCTACC
AAAGGAGGACCTCTGTCGCTGGGCCCTGGCTGCGGGCAGTTGGACCTACCACCAGGCCCT
GCGCGCACAGCGCCTGCAGTGGGAGTGATGGCTGGAGACAGCAAAGCAAGCCTTCTCCCC
TGGCTACCGCCTTCCCCTCACGGGCCTCCTCCTCTAGGGAGAGGCTCTTCTCCCTCCAGA
AGCCAGCTTGCTACAGAGTGACTGGTCAGGGGGCAGAGTCTGGGCACTGTCTCCTCCTCT
GGCTGAGTGTGAGGACTTGCCTAGACCAGAATGAGGGGGACCAAGTCCCAGGCACATTTG
GGGGCCTGATTCTGGGCTGGCCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGGACTGCTCTTCTGCCAATCTGCTTCTAGGAGGAGGCATGGTGCTGGCAGTGGCTGG
TGACCACCTTGGTGCCGAGGGCCGCTCTGTGGCTGGCCAGGCGGTGGTGCTGGTGGTTGC
GGTGACCATCCTCATCGTGGCTGTTTTCACAACCAACACTTATGGAATGTGGGGGGGGGT
GATGCTGGGTGCTGCAGGCCTCCTGAGCCGGCTGGAGGAGGACAGACTGCTGCTGCTACC
AAAGGAGGACCTCTGTCGCTGGGCCCTGGCTGCGGGCAGTTGGACCTACCACCAGGCCCT
GCGCGCACAGCGCCTGCAGTGGGAGTGATGGCTGGAGACAGCAAAGCAAGCCTTCTCCCC
TGGCTACCGCCTTCCCCTCACGGGCCTCCTCCTCTAGGGAGAGGCTCTTCTCCCTCCAGA
AGCCAGCTTGCTACAGAGTGACTGGTCAGGGGGCAGAGTCTGGGCACTGTCTCCTCCTCT
GGCTGAGTGTGAGGACTTGCCTAGACCAGAATGAGGGGGACCAAGTCCCAGGCACATTTG
GGGGCCTGATTCTGGGCTGGCCAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q7YR89_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q7YR89_BOVIN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-159, - strand, RNAz p=0.763035
               

               
               277-376, + strand, RNAz p=0.915096

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-159, - strand, RNAz p=0.763035
               

               
               277-376, + strand, RNAz p=0.915096

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               232-335, + strand, RNAmicro p=0.962357

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               232-335, + strand, RNAmicro p=0.962357

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-376, gnl|bosTau2|chr14 (3298928-3299305)
               

               
               1-376, gnl|Hg17|chr8 (145660645-145660241)
               

               
               1-376, gnl|Mm7|chr15 (76741259-76740889)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-376, gnl|bosTau2|chr14 (3298928-3299305)
               

               
               1-376, gnl|Hg17|chr8 (145660645-145660241)
               

               
               1-376, gnl|Mm7|chr15 (76741259-76740889)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fbs (0.175346)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)

	1-159, - strand, RNAz p=0.763035
	277-376, + strand, RNAz p=0.915096

	1-376, gnl\|bosTau2\|chr14 (3298928-3299305)
	1-376, gnl\|Hg17\|chr8 (145660645-145660241)
	1-376, gnl\|Mm7\|chr15 (76741259-76740889)