Non-Coding RNA Search

Ss1.1-Mixn-0030d09.5

Sequence:


               
               GGCTGGGCCCAGCTGGGACTGCCGGGGGACACCGGGCCCTGGTAGTGGCCCCGGGCTGTC
AGAGCTGGAGGGTGGAGCCAGCTGCCCAGGTGGGGAGCCAGAAGGACCCCCCAGGAGGAG
CAGAGAGCTGCCCTTGGAGGCCTTGCCCCAGGTCCAGCCTGAGCCCCCGCCGGGGATCTC
GGCCCAGCACAGGAAGCTGACGTTGGCCCAGCTCTACCGGATCAGGACCACTCTGCTGCT
CAACTCCACCCTCACTGCCTCGGAGGTCTGAGCAGAGGGAGGCCCCCAGGGGTGCCACTG
ACCAAGGGACAGCAGACAACATGCCTCCTGGAGAGGGCCGGGCAGGACCCCTGCCACCGC
CCTCAGGCCCCAGTGTGCACTTTGCCAGGCTGGATGGAAGTGGAGGAGGGCTCAGCAGAG
GCCCGGGCTGCAGGCCCCTTACCATTGCCACTGTCACTAACCTGCCCCCCAGCCTAGACT
GGGTCCCTTGCCCAATACTCCCTGAGGCCGCCAGTGCCAGTCCTCCCGGCTGGGCTCCAG
GGCTGGGACCCTGGCAACCCTTCCCACCTCCGCCCTCATCTGGCCCCAAAGGGGACACTC
CCTTGCCCTCAGGCACCTCGCTCCCACCCCATCCCTCTGGCCACCCCAGGCTTGGGTTGG
GCTCTGTGTAAAGTTGCATATTTATTGAGCTTTTGATTCTTTTATAAAGACTTGTATATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTGGGCCCAGCTGGGACTGCCGGGGGACACCGGGCCCTGGTAGTGGCCCCGGGCTGTC
AGAGCTGGAGGGTGGAGCCAGCTGCCCAGGTGGGGAGCCAGAAGGACCCCCCAGGAGGAG
CAGAGAGCTGCCCTTGGAGGCCTTGCCCCAGGTCCAGCCTGAGCCCCCGCCGGGGATCTC
GGCCCAGCACAGGAAGCTGACGTTGGCCCAGCTCTACCGGATCAGGACCACTCTGCTGCT
CAACTCCACCCTCACTGCCTCGGAGGTCTGAGCAGAGGGAGGCCCCCAGGGGTGCCACTG
ACCAAGGGACAGCAGACAACATGCCTCCTGGAGAGGGCCGGGCAGGACCCCTGCCACCGC
CCTCAGGCCCCAGTGTGCACTTTGCCAGGCTGGATGGAAGTGGAGGAGGGCTCAGCAGAG
GCCCGGGCTGCAGGCCCCTTACCATTGCCACTGTCACTAACCTGCCCCCCAGCCTAGACT
GGGTCCCTTGCCCAATACTCCCTGAGGCCGCCAGTGCCAGTCCTCCCGGCTGGGCTCCAG
GGCTGGGACCCTGGCAACCCTTCCCACCTCCGCCCTCATCTGGCCCCAAAGGGGACACTC
CCTTGCCCTCAGGCACCTCGCTCCCACCCCATCCCTCTGGCCACCCCAGGCTTGGGTTGG
GCTCTGTGTAAAGTTGCATATTTATTGAGCTTTTGATTCTTTTATAAAGACTTGTATATA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               2-237, - strand, RNAz p=0.982871
               

               
               449-628, - strand, RNAz p=0.999517
               

               
               516-624, - strand, RNAz p=0.983442

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-237, - strand, RNAz p=0.982871
               

               
               449-628, - strand, RNAz p=0.999517
               

               
               516-624, - strand, RNAz p=0.983442

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               84-196, + strand, RNAmicro p=0.94081

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               84-196, + strand, RNAmicro p=0.94081

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               2-311, gnl|bosTau2|chr16 (34696981-34697286)
               

               
               2-311, gnl|Hg17|chr1 (6462395-6462096)
               

               
               2-311, gnl|Mm7|chr4 (151103848-151104161)
               


               
               333-720, gnl|bosTau2|chr16 (34697590-34697984)
               

               
               333-720, gnl|canFam2|chr5 (63320079-63320616)
               

               
               333-720, gnl|echTel1|scaffold_303813 (11859-12368)
               

               
               333-720, gnl|hg17|chr1 (6461254-6461712)
               

               
               333-720, gnl|loxAfr1|scaffold_108619 (1726-1201)
               

               
               333-720, gnl|mm7|chr4 (151105095-151104665)
               

               
               333-720, gnl|Mm7|chr4 (151104591-151104928)
               

               
               333-720, gnl|monDom2|scaffold_78 (1866296-1865694)
               

               
               333-720, gnl|oryCun1|scaffold_195949 (6769-6441)
               

               
               333-720, gnl|panTro1|chr1 (6418698-6419156)
               

               
               333-720, gnl|rheMac2|chr1 (9484417-9484874)
               

               
               333-720, gnl|rn3|chr5 (169354480-169354059)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-311, gnl|bosTau2|chr16 (34696981-34697286)
               

               
               2-311, gnl|Hg17|chr1 (6462395-6462096)
               

               
               2-311, gnl|Mm7|chr4 (151103848-151104161)
               


               
               333-720, gnl|bosTau2|chr16 (34697590-34697984)
               

               
               333-720, gnl|canFam2|chr5 (63320079-63320616)
               

               
               333-720, gnl|echTel1|scaffold_303813 (11859-12368)
               

               
               333-720, gnl|hg17|chr1 (6461254-6461712)
               

               
               333-720, gnl|loxAfr1|scaffold_108619 (1726-1201)
               

               
               333-720, gnl|mm7|chr4 (151105095-151104665)
               

               
               333-720, gnl|Mm7|chr4 (151104591-151104928)
               

               
               333-720, gnl|monDom2|scaffold_78 (1866296-1865694)
               

               
               333-720, gnl|oryCun1|scaffold_195949 (6769-6441)
               

               
               333-720, gnl|panTro1|chr1 (6418698-6419156)
               

               
               333-720, gnl|rheMac2|chr1 (9484417-9484874)
               

               
               333-720, gnl|rn3|chr5 (169354480-169354059)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               lnt (0.142308)
               

               
               che (0.136314)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               lnt (0.142308)
               

               
               che (0.136314)

	2-237, - strand, RNAz p=0.982871
	449-628, - strand, RNAz p=0.999517
	516-624, - strand, RNAz p=0.983442

	2-311, gnl\|bosTau2\|chr16 (34696981-34697286)
	2-311, gnl\|Hg17\|chr1 (6462395-6462096)
	2-311, gnl\|Mm7\|chr4 (151103848-151104161)

	333-720, gnl\|bosTau2\|chr16 (34697590-34697984)
	333-720, gnl\|canFam2\|chr5 (63320079-63320616)
	333-720, gnl\|echTel1\|scaffold_303813 (11859-12368)
	333-720, gnl\|hg17\|chr1 (6461254-6461712)
	333-720, gnl\|loxAfr1\|scaffold_108619 (1726-1201)
	333-720, gnl\|mm7\|chr4 (151105095-151104665)
	333-720, gnl\|Mm7\|chr4 (151104591-151104928)
	333-720, gnl\|monDom2\|scaffold_78 (1866296-1865694)
	333-720, gnl\|oryCun1\|scaffold_195949 (6769-6441)
	333-720, gnl\|panTro1\|chr1 (6418698-6419156)
	333-720, gnl\|rheMac2\|chr1 (9484417-9484874)
	333-720, gnl\|rn3\|chr5 (169354480-169354059)