Non-Coding RNA Search

Ss1.1-Mixn-0030f12.5

Sequence:


               
               GGCAGGTTCGTGCGCTGAAAGCCCGCCAGCNTGCAGGGAGGCGCCCTCCAGCCTCTCATT
CACTCCCGACACCGGAGCTGCTGCTGATGGTCCTGATCCCCGGACGGGCGAACCGAGGCG
CGGGACCTACTGCCCCGTGGGCGGGCTGGGGCTGCGGGCCGACCGGCTGCTGGCCCTCAG
CCTCCTGTCCAGGTGGAGTGCCGTCGTGGGGGAGCTGGAAGCTGCCCTGAAGCGAGTCTT
CTACCCGGACGCGGTGGAGGAGTGGCTGGAGGAGAACGTGCACCCCAGCCTGCAGCGGCT
GCAGGCGCTGCTGCAGGACCTCCACGAGGCGGCCAGCCCCAGGCCCGACTCGGGCCAAGA
CCCCTGAGCAAGGAGCGGGGGCAGGGGCGGTGAGCCGGCCGCCGGCCTTCCTGTCCCTGA
GGCTGAGCCCGGACCGGGAGGCAGAGGCGCGGGCCTGTGCGCGGTCAGTGCAGACGACTG
ATTCCTTCAAGAGGAGAGTGGAAGCCAGAGGTCACGCCAGAGGAAACCGCAAAGTCCCTG
TCAGCGCCCTGGCTCCGGCTGCTGGAGGTGGGCCCTCACGGTGGCCCGAGAAGCCGGCCC
GAGGGAGGAGCGGGCCAAACACCCTCCCTCTGTTCTCCAAGCATCTCCCAGCCCGCGGCC
AAACACCAGAAATCAATTACAGCAGTTCACGCCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAGGTTCGTGCGCTGAAAGCCCGCCAGCNTGCAGGGAGGCGCCCTCCAGCCTCTCATT
CACTCCCGACACCGGAGCTGCTGCTGATGGTCCTGATCCCCGGACGGGCGAACCGAGGCG
CGGGACCTACTGCCCCGTGGGCGGGCTGGGGCTGCGGGCCGACCGGCTGCTGGCCCTCAG
CCTCCTGTCCAGGTGGAGTGCCGTCGTGGGGGAGCTGGAAGCTGCCCTGAAGCGAGTCTT
CTACCCGGACGCGGTGGAGGAGTGGCTGGAGGAGAACGTGCACCCCAGCCTGCAGCGGCT
GCAGGCGCTGCTGCAGGACCTCCACGAGGCGGCCAGCCCCAGGCCCGACTCGGGCCAAGA
CCCCTGAGCAAGGAGCGGGGGCAGGGGCGGTGAGCCGGCCGCCGGCCTTCCTGTCCCTGA
GGCTGAGCCCGGACCGGGAGGCAGAGGCGCGGGCCTGTGCGCGGTCAGTGCAGACGACTG
ATTCCTTCAAGAGGAGAGTGGAAGCCAGAGGTCACGCCAGAGGAAACCGCAAAGTCCCTG
TCAGCGCCCTGGCTCCGGCTGCTGGAGGTGGGCCCTCACGGTGGCCCGAGAAGCCGGCCC
GAGGGAGGAGCGGGCCAAACACCCTCCCTCTGTTCTCCAAGCATCTCCCAGCCCGCGGCC
AAACACCAGAAATCAATTACAGCAGTTCACGCCTTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               154-409, gnl|bosTau2|chr19 (47499877-47499621)
               

               
               154-409, gnl|Hg17|chr17 (77993308-77993650)
               

               
               154-409, gnl|Mm7|chr11 (121331240-121331519)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               154-409, gnl|bosTau2|chr19 (47499877-47499621)
               

               
               154-409, gnl|Hg17|chr17 (77993308-77993650)
               

               
               154-409, gnl|Mm7|chr11 (121331240-121331519)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               med (0.232504)
               

               
               fhi (0.169578)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.232504)
               

               
               fhi (0.169578)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)

	154-409, gnl\|bosTau2\|chr19 (47499877-47499621)
	154-409, gnl\|Hg17\|chr17 (77993308-77993650)
	154-409, gnl\|Mm7\|chr11 (121331240-121331519)