Ss1.1-Mixn-0030f13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGCGGTGGATATCCGAGATAATCTGCTGGGGATATCTTGGGTTGACAGTTCCTGGATC CCTATTTTGAACAGTGGAAGTGTCCTGGATTACTTTTCAGAAAGAAGTAATCCTTTTTAT GACAGGACATGTAATAACGAAGTGGTCAAAATGCAGAGGCTAACATTAGAACACTTAAAT CAGATGGTTGGAGTGGAATACATCCTTCTGCATGCTCAAGAGCCCATTCTTTTTATCATT CGGAAGCAACAGCGGCAGTCCCCTACCCAAGTTATCCCACTGGCTGATTACTATATCATT GCTGGAGTGATCTATCAGGCACCAGATTTGGGATCAGTTATAAACTCTAGAGTGCTTACT GCAGTGCATGGTATTCAGTCAGCTTTTGATGAAGCTATGTCATATTGTCGATATCATCCT TCCAAAGGGTATTGGTGGCACTTCAAAGATCATGAAGAGCAAGATAAAATCAAACCTAAA GTCAAAAGGAAAGAAGAACCAAGCTCTATTTTCCAGAGACAACGTGTGGATGCTTTACTG CTGGACCTTAGACAAAAATTTCCACCCAAATTTGTGCAGCAAAAGTCTGGAGAAAAGCCT GTCCCAGTGGATCAAACAAAGAAAGAGGCAGAACCTATACCAGAAACTGTAAAATCTGAG GAAAAGGAGACCACAAAGAACATCCAACAGACAGCGGGCACTAAAGGCCCCCCTGAAAAA CGAATGAGACTTCAGTGAGTATCGGAGAATGAGAGAAAAATTTGCAAAGACTCCTCTTGT CCACATTTTACCTCATTACCGTGACAGGCTTGTGAACTTTAAAATTCTTTGTCACAGTCA TTGTATAGAGTGTGCTTGTTCTTTAAGAAAAAAATGTAAGGATCCTCATGCTTTCAATCT GAATATTTTTAATATATCTTTTGTAACCTTTTCCCTACTGGACTCAAGCACCTTCCTCAC TCACATGTACTGCTATGTATGTTTAGAAACAAAATAAAGGTCTTTGAATATAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGCGGTGGATATCCGAGATAATCTGCTGGGGATATCTTGGGTTGACAGTTCCTGGATC CCTATTTTGAACAGTGGAAGTGTCCTGGATTACTTTTCAGAAAGAAGTAATCCTTTTTAT GACAGGACATGTAATAACGAAGTGGTCAAAATGCAGAGGCTAACATTAGAACACTTAAAT CAGATGGTTGGAGTGGAATACATCCTTCTGCATGCTCAAGAGCCCATTCTTTTTATCATT CGGAAGCAACAGCGGCAGTCCCCTACCCAAGTTATCCCACTGGCTGATTACTATATCATT GCTGGAGTGATCTATCAGGCACCAGATTTGGGATCAGTTATAAACTCTAGAGTGCTTACT GCAGTGCATGGTATTCAGTCAGCTTTTGATGAAGCTATGTCATATTGTCGATATCATCCT TCCAAAGGGTATTGGTGGCACTTCAAAGATCATGAAGAGCAAGATAAAATCAAACCTAAA GTCAAAAGGAAAGAAGAACCAAGCTCTATTTTCCAGAGACAACGTGTGGATGCTTTACTG CTGGACCTTAGACAAAAATTTCCACCCAAATTTGTGCAGCAAAAGTCTGGAGAAAAGCCT GTCCCAGTGGATCAAACAAAGAAAGAGGCAGAACCTATACCAGAAACTGTAAAATCTGAG GAAAAGGAGACCACAAAGAACATCCAACAGACAGCGGGCACTAAAGGCCCCCCTGAAAAA CGAATGAGACTTCAGTGAGTATCGGAGAATGAGAGAAAAATTTGCAAAGACTCCTCTTGT CCACATTTTACCTCATTACCGTGACAGGCTTGTGAACTTTAAAATTCTTTGTCACAGTCA TTGTATAGAGTGTGCTTGTTCTTTAAGAAAAAAATGTAAGGATCCTCATGCTTTCAATCT GAATATTTTTAATATATCTTTTGTAACCTTTTCCCTACTGGACTCAAGCACCTTCCTCAC TCACATGTACTGCTATGTATGTTTAGAAACAAAATAAAGGTCTTTGAATATAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 18-177, + strand, RNAz p=0.787897 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 18-177, + strand, RNAz p=0.787897 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 18-179, gnl|bosTau2|chr10 (57532714-57532553) | |
| 18-179, gnl|Hg17|chr14 (70134249-70134088) | |
| 18-179, gnl|Mm7|chr12 (79553270-79553109) | |
| 354-466, gnl|bosTau2|chr10 (57529443-57529331) | |
| 354-466, gnl|canFam2|chr8 (47351432-47351567) | |
| 354-466, gnl|danRer3|chr13 (38795574-38795702) | |
| 354-466, gnl|dasNov1|scaffold_1427 (53174-53282) | |
| 354-466, gnl|echTel1|scaffold_194578 (1525-1404) | |
| 354-466, gnl|fr1|chrUn (2925193-2925063) | |
| 354-466, gnl|galGal2|chrUn (140096745-140096620) | |
| 354-466, gnl|hg17|chr14 (70129341-70129476) | |
| 354-466, gnl|Hg17|chr14 (70129459-70129347) | |
| 354-466, gnl|loxAfr1|scaffold_29000 (4188-4053) | |
| 354-466, gnl|mm7|chr12 (79543642-79543785) | |
| 354-466, gnl|Mm7|chr12 (79543760-79543648) | |
| 354-466, gnl|monDom2|scaffold_8 (65373684-65373552) | |
| 354-466, gnl|oryCun1|scaffold_198351 (86931-87067) | |
| 354-466, gnl|panTro1|chr15 (69900921-69901056) | |
| 354-466, gnl|rheMac2|chr7 (133680956-133681091) | |
| 354-466, gnl|rn3|chr6 (105444060-105444203) | |
| 354-466, gnl|tetNig1|chr10 (11469134-11469005) | |
| 354-466, gnl|xenTro1|scaffold_218 (821932-822070) | |
| 606-1010, gnl|bosTau2|chr10 (57518966-57518563) | |
| 606-1010, gnl|Hg17|chr14 (70121415-70120710) | |
| 606-1010, gnl|Mm7|chr12 (79535711-79535318) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 18-179, gnl|bosTau2|chr10 (57532714-57532553) | |
| 18-179, gnl|Hg17|chr14 (70134249-70134088) | |
| 18-179, gnl|Mm7|chr12 (79553270-79553109) | |
| 354-466, gnl|bosTau2|chr10 (57529443-57529331) | |
| 354-466, gnl|canFam2|chr8 (47351432-47351567) | |
| 354-466, gnl|danRer3|chr13 (38795574-38795702) | |
| 354-466, gnl|dasNov1|scaffold_1427 (53174-53282) | |
| 354-466, gnl|echTel1|scaffold_194578 (1525-1404) | |
| 354-466, gnl|fr1|chrUn (2925193-2925063) | |
| 354-466, gnl|galGal2|chrUn (140096745-140096620) | |
| 354-466, gnl|hg17|chr14 (70129341-70129476) | |
| 354-466, gnl|Hg17|chr14 (70129459-70129347) | |
| 354-466, gnl|loxAfr1|scaffold_29000 (4188-4053) | |
| 354-466, gnl|mm7|chr12 (79543642-79543785) | |
| 354-466, gnl|Mm7|chr12 (79543760-79543648) | |
| 354-466, gnl|monDom2|scaffold_8 (65373684-65373552) | |
| 354-466, gnl|oryCun1|scaffold_198351 (86931-87067) | |
| 354-466, gnl|panTro1|chr15 (69900921-69901056) | |
| 354-466, gnl|rheMac2|chr7 (133680956-133681091) | |
| 354-466, gnl|rn3|chr6 (105444060-105444203) | |
| 354-466, gnl|tetNig1|chr10 (11469134-11469005) | |
| 354-466, gnl|xenTro1|scaffold_218 (821932-822070) | |
| 606-1010, gnl|bosTau2|chr10 (57518966-57518563) | |
| 606-1010, gnl|Hg17|chr14 (70121415-70120710) | |
| 606-1010, gnl|Mm7|chr12 (79535711-79535318) |
| Expressed library(ies): 26 entry(ies) | More info |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
| liv (0.585137) | |
| ret (0.3862) | |
| thg (0.380373) | |
| spc (0.340097) | |
| lun (0.300978) | |
| bfe (0.299715) | |
| ski (0.29347) | |
| kid (0.259471) | |
| sug (0.254582) | |
| tra (0.246184) | |
| cbe (0.239234) | |
| hea (0.204499) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| ste (0.135208) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| ese (0.126502) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| jej (0.0989218) | |
| ldo (0.0970026) |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| liv (0.585137) | |
| ret (0.3862) | |
| thg (0.380373) | |
| spc (0.340097) | |
| lun (0.300978) | |
| bfe (0.299715) | |
| ski (0.29347) | |
| kid (0.259471) | |
| sug (0.254582) | |
| tra (0.246184) | |
| cbe (0.239234) | |
| hea (0.204499) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| ste (0.135208) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| ese (0.126502) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| jej (0.0989218) | |
| ldo (0.0970026) |