Non-Coding RNA Search

Ss1.1-Mixn-0030f20.5

Sequence:


               
               TTCATGCTGGAACATCTTCCACCTCCATCACCCCGTGACCCCCATCCCATGCCAGCTCCA
TCCAGAGCCTTGACCTGCAGACTTCCCTCCCATGACCTAAGAGGTCATATCCAAAGCCCT
CGGTAACCACAGAGGCACAGAGCAGGGCAGGGCAGGGCATGGCTGGTCCATGGTGAGACA
GCTCTGTTCCAGGAGAGCCTGTTAGCTAAGGTTTGAGGCAAGCACCATTGCCAAGGGGCT
GGTCCCAGTCCTGGCCAAGGCTAGGCCCAACCCTGCCCCACATTCCAGCCTCATTGTACA
GGGATGCTGTATTCCTGCCCTGTGCCTCAGGCCTGGCTGCCTAAGCTGGGGACACTCAAG
TGCTTCCTTCCCTGCCCCCTCTTCCTCCCACTGGGAGGCCTCTGGGCCACCCTCTGTGCC
TTGGGCCCTGAAGCCCCACCCCTAGTACTGAGAAAGGTGGCCCCTGGTGGAGAGAAGGGA
AAGGCCCTTCACGTCTGGGCATGTCTGGATCCCATCCTCTCTAATATTCGCTGGGTTTTT
CTACCTGCCCCTGGAACTGAGGCCCACGAGAGCCTCTGCCCAGGGTCCAGTGGGGAGCCT
CCAGCCAGCAGTTTCCTGTCCTCCTCAGCCACAGGATGGTCCTCACTGCCTGGCCCTCCA
TCCCTGCCACCTGTCCCCCTGGTCTCCAGCTCATCCCACCCTCGACCTACCTGTCACTCT
TTCCCAGGGGCTGGATCCAGGTGCTGCTCTGAGGTTCTGGGCAGTAGGCTGGGCCTGGCC
TCAGAACCAGGGCAGCTCCTGCCTTCTCCTTCCCTTTTGTAAAGCCAACCCTTTCACCAG
AATAGTATTAACTCCTGGTGCTTTGTACTACTGGTCCAGCTGCCTTGGGCTCCTTTTCTA
TATTAATAAAGAAATGAGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCATGCTGGAACATCTTCCACCTCCATCACCCCGTGACCCCCATCCCATGCCAGCTCCA
TCCAGAGCCTTGACCTGCAGACTTCCCTCCCATGACCTAAGAGGTCATATCCAAAGCCCT
CGGTAACCACAGAGGCACAGAGCAGGGCAGGGCAGGGCATGGCTGGTCCATGGTGAGACA
GCTCTGTTCCAGGAGAGCCTGTTAGCTAAGGTTTGAGGCAAGCACCATTGCCAAGGGGCT
GGTCCCAGTCCTGGCCAAGGCTAGGCCCAACCCTGCCCCACATTCCAGCCTCATTGTACA
GGGATGCTGTATTCCTGCCCTGTGCCTCAGGCCTGGCTGCCTAAGCTGGGGACACTCAAG
TGCTTCCTTCCCTGCCCCCTCTTCCTCCCACTGGGAGGCCTCTGGGCCACCCTCTGTGCC
TTGGGCCCTGAAGCCCCACCCCTAGTACTGAGAAAGGTGGCCCCTGGTGGAGAGAAGGGA
AAGGCCCTTCACGTCTGGGCATGTCTGGATCCCATCCTCTCTAATATTCGCTGGGTTTTT
CTACCTGCCCCTGGAACTGAGGCCCACGAGAGCCTCTGCCCAGGGTCCAGTGGGGAGCCT
CCAGCCAGCAGTTTCCTGTCCTCCTCAGCCACAGGATGGTCCTCACTGCCTGGCCCTCCA
TCCCTGCCACCTGTCCCCCTGGTCTCCAGCTCATCCCACCCTCGACCTACCTGTCACTCT
TTCCCAGGGGCTGGATCCAGGTGCTGCTCTGAGGTTCTGGGCAGTAGGCTGGGCCTGGCC
TCAGAACCAGGGCAGCTCCTGCCTTCTCCTTCCCTTTTGTAAAGCCAACCCTTTCACCAG
AATAGTATTAACTCCTGGTGCTTTGTACTACTGGTCCAGCTGCCTTGGGCTCCTTTTCTA
TATTAATAAAGAAATGAGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               72-164, - strand, RNAz p=0.840166
               

               
               202-300, - strand, RNAz p=0.969041
               

               
               621-898, + strand, RNAz p=0.999704

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               72-164, - strand, RNAz p=0.840166
               

               
               202-300, - strand, RNAz p=0.969041
               

               
               621-898, + strand, RNAz p=0.999704

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               621-897, DB810992 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|DB810992.1|), blast E-value=0, identity=99.28% 
               

               
               625-898, DG11-92g4 DG11-kidney Canis familiaris cDNA 3', mRNA sequence 
(gb|CO696001.1|), blast E-value=0, identity=90.15% 
               

               
               625-898, DG14-79f24 DG14-muscle Canis familiaris cDNA 3', mRNA sequence 
(gb|CO719170.1|), blast E-value=0, identity=90.15% 
               

               
               625-898, DOG_EST_P49D07 Canis familiaris testis cDNA Canis familiaris cDNA, 
(gb|CX988154.1|), blast E-value=0, identity=90.15% 
               

               
               625-898, DOG_EST_P123C03 Canis familiaris testis cDNA Canis familiaris cDNA, 
(gb|CX992726.1|), blast E-value=0, identity=90.15% 
               

               
               651-898, POSM0605011_E04F porcine skeletal muscle cDNA library (PoSM) Sus 
(gb|DV899345.1|), blast E-value=0, identity=100%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               621-897, DB810992 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|DB810992.1|), blast E-value=0, identity=99.28% 
               

               
               625-898, DG11-92g4 DG11-kidney Canis familiaris cDNA 3', mRNA sequence 
(gb|CO696001.1|), blast E-value=0, identity=90.15% 
               

               
               625-898, DG14-79f24 DG14-muscle Canis familiaris cDNA 3', mRNA sequence 
(gb|CO719170.1|), blast E-value=0, identity=90.15% 
               

               
               625-898, DOG_EST_P49D07 Canis familiaris testis cDNA Canis familiaris cDNA, 
(gb|CX988154.1|), blast E-value=0, identity=90.15% 
               

               
               625-898, DOG_EST_P123C03 Canis familiaris testis cDNA Canis familiaris cDNA, 
(gb|CX992726.1|), blast E-value=0, identity=90.15% 
               

               
               651-898, POSM0605011_E04F porcine skeletal muscle cDNA library (PoSM) Sus 
(gb|DV899345.1|), blast E-value=0, identity=100%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_022060, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_022060, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-335, gnl|bosTau2|chr10 (14399788-14399457)
               

               
               3-335, gnl|Hg17|chr14 (22150097-22150613)
               

               
               3-335, gnl|Mm7|chr14 (49138270-49138700)
               


               
               562-924, gnl|bosTau2|chr10 (14399348-14399003)
               

               
               562-924, gnl|Hg17|chr14 (22150735-22151102)
               

               
               562-924, gnl|Mm7|chr14 (49138819-49139186)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-335, gnl|bosTau2|chr10 (14399788-14399457)
               

               
               3-335, gnl|Hg17|chr14 (22150097-22150613)
               

               
               3-335, gnl|Mm7|chr14 (49138270-49138700)
               


               
               562-924, gnl|bosTau2|chr10 (14399348-14399003)
               

               
               562-924, gnl|Hg17|chr14 (22150735-22151102)
               

               
               562-924, gnl|Mm7|chr14 (49138819-49139186)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               cov (0.660764)
               

               
               fcc (0.39557)
               

               
               mas (0.210305)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.660764)
               

               
               fcc (0.39557)
               

               
               mas (0.210305)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)

	72-164, - strand, RNAz p=0.840166
	202-300, - strand, RNAz p=0.969041
	621-898, + strand, RNAz p=0.999704

	621-897, DB810992 full-length enriched swine cDNA library, adult ovary Sus (dbj\|DB810992.1\|), blast E-value=0, identity=99.28%
	625-898, DG11-92g4 DG11-kidney Canis familiaris cDNA 3', mRNA sequence (gb\|CO696001.1\|), blast E-value=0, identity=90.15%
	625-898, DG14-79f24 DG14-muscle Canis familiaris cDNA 3', mRNA sequence (gb\|CO719170.1\|), blast E-value=0, identity=90.15%
	625-898, DOG_EST_P49D07 Canis familiaris testis cDNA Canis familiaris cDNA, (gb\|CX988154.1\|), blast E-value=0, identity=90.15%
	625-898, DOG_EST_P123C03 Canis familiaris testis cDNA Canis familiaris cDNA, (gb\|CX992726.1\|), blast E-value=0, identity=90.15%
	651-898, POSM0605011_E04F porcine skeletal muscle cDNA library (PoSM) Sus (gb\|DV899345.1\|), blast E-value=0, identity=100%

	3-335, gnl\|bosTau2\|chr10 (14399788-14399457)
	3-335, gnl\|Hg17\|chr14 (22150097-22150613)
	3-335, gnl\|Mm7\|chr14 (49138270-49138700)

	562-924, gnl\|bosTau2\|chr10 (14399348-14399003)
	562-924, gnl\|Hg17\|chr14 (22150735-22151102)
	562-924, gnl\|Mm7\|chr14 (49138819-49139186)

	cov (0.660764)
	fcc (0.39557)
	mas (0.210305)
	ill (0.175593)
	fbs (0.175346)
	mcp (0.170648)
	fhi (0.169578)
	hyp (0.142837)
	pla (0.133672)
	ebs (0.118301)
	jej (0.0989218)