Non-Coding RNA Search

Ss1.1-Mixn-0030h09.5

Sequence:


               
               TCCTTTCTACTCCTCAGAGAAATTTTGAGATTGCCTTCAAGATGTTTGACTTGAATGGAG
ATGGAGAAGTAGACATGGAGGAATTTGAACAGGTTCAAAGCATCATTCGCTCCCAAACCA
GCATGGGAATGCGTCACAGAGATCGTTCTACTACTGGTAACACCCTCAAGTCTGGCTTGT
GTTCAGCCCTCACAACCTACTTTTTTGGACCTGATCTCAAGGGGAAGCTGACAATCAAAA
ACTTCCTTGAATTTCAGCGTAAACTTCAGCACGATGTTCTGAAGCTAGAGTTTGAACGCC
ACGACCCGGTGGATGGGAGAATCACTGAGAGGCAGTTTGGTGGCATGCTGCTGGCCTACA
GTGGGGTGCAGTCCAAGAAGCTGACTGCCATGCAGAAGCAGCTCAAGAAGCACTTCAAAG
AGGGAAAGGGTCTGACGTTTCAGGAAGTGGAGAACTTCTTTACCTTCCTAAAGAATATTA
ATGATGTAGACACTGCATTGAGCTTTTACCATATGGCTGGGGCATCTCTAGATAAAGTGA
CCATGCAGCAGGTGGCCAGGACCGTGGCTAAAGTGGAACTCTCAGACCACGTGTGCGATG
TGGTATTTGCACTCTTTGACTGTGATGGCAATGGAGAGCTGAGCAATAAGGAATTTGTCT
CCATCATGAAGCAACGGCTGATGAGAGGCCTGGAGAAGCCCAAAGACATGGGCTTCACCC
GCCTCATGCAGGCCATGTGGAAATGCGCACAGGAAACGGCCTGGGACTTCACTTTGCCCA
AACAGTAACCCCACACTGCCCAGGGGGCCACCTCTCCACCCCCAAGCCGAGCCTTGGCAC
AGCCTTCCCTGCCGCTCCTTCTGGAAGTAGTGCTCCTCCCTCCGGGGGATGATCTCAGGA
TTCCTCGGGTTGCCCCTGTCCCAGTGTTCTGCTAGGCTCTCATTCCGAACCAGTGATTCT
CCCTGTAAGTGTTCAGAAACATGAGCAAGTCCTGAAAGCGCAGGCCTTCGGCACGTTCAA
CAGCTCCACCCATTCAAGCACCCACCCTACGGATAAGGCATGCAGGGAACTCTCCACTAA
CTGCCAGGCCTGGGAGACACCCAGGGCTGGAGTCATTGTGCTGTGGATTTATGTTAACAA
GAACATTCCTTGCTTCTCCTCTTGCTGGTGTTTTTTAAGCTACAAGTTGGGAGAACTTCT
GGCAGGCAAAAGGAAATCACGGCTGAACGACAACAAAGATGACCTGAGCACGGGAGCTGT
TGGGAGGCCTGGGCCAGATGAAGGATTCGTGTCAGTCCCCAGGGTAGCTCTGAGGCCTGG
CCCGGAAGGCGATGTGCACGGTGGGAATGGAGCAAGATTTGGAATGTAAAGCAGCTGCTT
CATGGCTTTCTCCACTCCTGGCTTTCCCTCTCAGGCTCCCTAAGGAAACTCCCCCACAAC
TGAGCTTAGTAAAGAGCAGCAGAGGTTGAGCTCCTGTTCCCTGCAAGTGCCACATTCCCT
CCAGGCGTGTGTCTCTGGAGCTGGAGCCTGGCTCACAGCCTTTCTGCTCTTGTCTTAAAC
ACTTGTAAAATATCACTTTAATTATAGCAGTTTGCAATAACCCCTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCTTTCTACTCCTCAGAGAAATTTTGAGATTGCCTTCAAGATGTTTGACTTGAATGGAG
ATGGAGAAGTAGACATGGAGGAATTTGAACAGGTTCAAAGCATCATTCGCTCCCAAACCA
GCATGGGAATGCGTCACAGAGATCGTTCTACTACTGGTAACACCCTCAAGTCTGGCTTGT
GTTCAGCCCTCACAACCTACTTTTTTGGACCTGATCTCAAGGGGAAGCTGACAATCAAAA
ACTTCCTTGAATTTCAGCGTAAACTTCAGCACGATGTTCTGAAGCTAGAGTTTGAACGCC
ACGACCCGGTGGATGGGAGAATCACTGAGAGGCAGTTTGGTGGCATGCTGCTGGCCTACA
GTGGGGTGCAGTCCAAGAAGCTGACTGCCATGCAGAAGCAGCTCAAGAAGCACTTCAAAG
AGGGAAAGGGTCTGACGTTTCAGGAAGTGGAGAACTTCTTTACCTTCCTAAAGAATATTA
ATGATGTAGACACTGCATTGAGCTTTTACCATATGGCTGGGGCATCTCTAGATAAAGTGA
CCATGCAGCAGGTGGCCAGGACCGTGGCTAAAGTGGAACTCTCAGACCACGTGTGCGATG
TGGTATTTGCACTCTTTGACTGTGATGGCAATGGAGAGCTGAGCAATAAGGAATTTGTCT
CCATCATGAAGCAACGGCTGATGAGAGGCCTGGAGAAGCCCAAAGACATGGGCTTCACCC
GCCTCATGCAGGCCATGTGGAAATGCGCACAGGAAACGGCCTGGGACTTCACTTTGCCCA
AACAGTAACCCCACACTGCCCAGGGGGCCACCTCTCCACCCCCAAGCCGAGCCTTGGCAC
AGCCTTCCCTGCCGCTCCTTCTGGAAGTAGTGCTCCTCCCTCCGGGGGATGATCTCAGGA
TTCCTCGGGTTGCCCCTGTCCCAGTGTTCTGCTAGGCTCTCATTCCGAACCAGTGATTCT
CCCTGTAAGTGTTCAGAAACATGAGCAAGTCCTGAAAGCGCAGGCCTTCGGCACGTTCAA
CAGCTCCACCCATTCAAGCACCCACCCTACGGATAAGGCATGCAGGGAACTCTCCACTAA
CTGCCAGGCCTGGGAGACACCCAGGGCTGGAGTCATTGTGCTGTGGATTTATGTTAACAA
GAACATTCCTTGCTTCTCCTCTTGCTGGTGTTTTTTAAGCTACAAGTTGGGAGAACTTCT
GGCAGGCAAAAGGAAATCACGGCTGAACGACAACAAAGATGACCTGAGCACGGGAGCTGT
TGGGAGGCCTGGGCCAGATGAAGGATTCGTGTCAGTCCCCAGGGTAGCTCTGAGGCCTGG
CCCGGAAGGCGATGTGCACGGTGGGAATGGAGCAAGATTTGGAATGTAAAGCAGCTGCTT
CATGGCTTTCTCCACTCCTGGCTTTCCCTCTCAGGCTCCCTAAGGAAACTCCCCCACAAC
TGAGCTTAGTAAAGAGCAGCAGAGGTTGAGCTCCTGTTCCCTGCAAGTGCCACATTCCCT
CCAGGCGTGTGTCTCTGGAGCTGGAGCCTGGCTCACAGCCTTTCTGCTCTTGTCTTAAAC
ACTTGTAAAATATCACTTTAATTATAGCAGTTTGCAATAACCCCTCCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61864857|ref|XP_612617.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61864857|ref|XP_612617.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               639-798, - strand, RNAz p=0.994217

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               639-798, - strand, RNAz p=0.994217

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               91-290, gnl|bosTau2|chr28 (22048741-22048542)
               

               
               91-290, gnl|Hg17|chr10 (73905063-73904864)
               

               
               91-290, gnl|Mm7|chr10 (59307072-59307271)
               


               
               599-1600, gnl|bosTau2|chr28 (22018524-22017530)
               

               
               599-1600, gnl|Hg17|chr10 (73798143-73797118)
               

               
               599-1600, gnl|Mm7|chr10 (59381352-59382317)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               91-290, gnl|bosTau2|chr28 (22048741-22048542)
               

               
               91-290, gnl|Hg17|chr10 (73905063-73904864)
               

               
               91-290, gnl|Mm7|chr10 (59307072-59307271)
               


               
               599-1600, gnl|bosTau2|chr28 (22018524-22017530)
               

               
               599-1600, gnl|Hg17|chr10 (73798143-73797118)
               

               
               599-1600, gnl|Mm7|chr10 (59381352-59382317)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               fcc (0.39557)
               

               
               elu (0.385356)
               

               
               clu (0.239292)
               

               
               pgl (0.236967)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               che (0.136314)
               

               
               ese (0.126502)
               

               
               eru (0.120048)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               elu (0.385356)
               

               
               clu (0.239292)
               

               
               pgl (0.236967)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               che (0.136314)
               

               
               ese (0.126502)
               

               
               eru (0.120048)

	91-290, gnl\|bosTau2\|chr28 (22048741-22048542)
	91-290, gnl\|Hg17\|chr10 (73905063-73904864)
	91-290, gnl\|Mm7\|chr10 (59307072-59307271)

	599-1600, gnl\|bosTau2\|chr28 (22018524-22017530)
	599-1600, gnl\|Hg17\|chr10 (73798143-73797118)
	599-1600, gnl\|Mm7\|chr10 (59381352-59382317)

	fcc (0.39557)
	elu (0.385356)
	clu (0.239292)
	pgl (0.236967)
	gul (0.177588)
	fbs (0.175346)
	mcp (0.170648)
	fhi (0.169578)
	nco (0.161734)
	hyp (0.142837)
	che (0.136314)
	ese (0.126502)
	eru (0.120048)