Non-Coding RNA Search

Ss1.1-Mixn-0030h11.5

Sequence:


               
               CAGATCCCTTGAGGGCCACGATAGTGGAGTTTGTGTCCAGCGAGAAAACGCAGTTGGCGT
TTCCCGCCTCCCTGAACTCGCATGACAGGCTGCGGGTCCATCAGATGGCAGAGGAGTTCG
GGCTGAGGCACGACAGTGCTGGGGAGGGCAGGGAGCGCTTCATCACCGTGAGCAAGAGGG
CCCCGCCAGCCCCTGCGGCCCCGCCACCCCCGGCGGAGGCCGGCAGCAAAGCCCCTCTCT
GTCCAGAGCCCCCCAGCCCCGCACACACAGAGGCCCCCGTCGGGGTGCAGAGCAGCCAGA
ACCAGCTGGACCTGAAGGTGCTGCACCTCGAGAGACTGCAGAGGGCGAGGAGCCGGCAGG
AGCAGCAGGCCAGGGAGGGGCCACAGGCTGCGGGCTCCAAGCCACGCAAGTTCCTAGAAA
AGAAGAAGAAAGAAGCGAAAGGACCCACGGCCATAGACCTGCCGGCTGAGGAGGACTTTG
ACGCCCTGGTCTCAGCCGCCATCAAGGCTGATAACACCTGTGGCCTCGCGAAGTGCCCAG
CCAGCGTGGTGACCCTGGGCCAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGATCCCTTGAGGGCCACGATAGTGGAGTTTGTGTCCAGCGAGAAAACGCAGTTGGCGT
TTCCCGCCTCCCTGAACTCGCATGACAGGCTGCGGGTCCATCAGATGGCAGAGGAGTTCG
GGCTGAGGCACGACAGTGCTGGGGAGGGCAGGGAGCGCTTCATCACCGTGAGCAAGAGGG
CCCCGCCAGCCCCTGCGGCCCCGCCACCCCCGGCGGAGGCCGGCAGCAAAGCCCCTCTCT
GTCCAGAGCCCCCCAGCCCCGCACACACAGAGGCCCCCGTCGGGGTGCAGAGCAGCCAGA
ACCAGCTGGACCTGAAGGTGCTGCACCTCGAGAGACTGCAGAGGGCGAGGAGCCGGCAGG
AGCAGCAGGCCAGGGAGGGGCCACAGGCTGCGGGCTCCAAGCCACGCAAGTTCCTAGAAA
AGAAGAAGAAAGAAGCGAAAGGACCCACGGCCATAGACCTGCCGGCTGAGGAGGACTTTG
ACGCCCTGGTCTCAGCCGCCATCAAGGCTGATAACACCTGTGGCCTCGCGAAGTGCCCAG
CCAGCGTGGTGACCCTGGGCCAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|24987798|pdb|1MSZ|A

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|24987798|pdb|1MSZ|A

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               199-316, - strand, RNAz p=0.685921

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               199-316, - strand, RNAz p=0.685921

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-435, gnl|bosTau2|chr29 (41760612-41760178)
               

               
               1-435, gnl|Hg17|chr11 (68460701-68461128)
               

               
               1-435, gnl|Mm7|chr19 (3160054-3159626)
               


               
               440-564, gnl|bosTau2|chr29 (41758848-41758724)
               

               
               440-564, gnl|canFam2|chr18 (52093528-52093331)
               

               
               440-564, gnl|danRer3|chr18 (25788382-25788203)
               

               
               440-564, gnl|echTel1|scaffold_172156 (5116-4914)
               

               
               440-564, gnl|fr1|chrUn (157368788-157368613)
               

               
               440-564, gnl|hg17|chr11 (68462217-68462415)
               

               
               440-564, gnl|Hg17|chr11 (68462224-68462348)
               

               
               440-564, gnl|loxAfr1|scaffold_32494 (17667-17481)
               

               
               440-564, gnl|mm7|chr19 (3156961-3156771)
               

               
               440-564, gnl|Mm7|chr19 (3156953-3156831)
               

               
               440-564, gnl|monDom2|scaffold_182 (191368-191563)
               

               
               440-564, gnl|panTro1|chr9 (69518777-69518975)
               

               
               440-564, gnl|rheMac2|chr14 (5799655-5799457)
               

               
               440-564, gnl|rn3|chr1 (205947269-205947083)
               

               
               440-564, gnl|tetNig1|chr13 (10808171-10807999)
               

               
               440-564, gnl|xenTro1|scaffold_146 (1656492-1656296)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-435, gnl|bosTau2|chr29 (41760612-41760178)
               

               
               1-435, gnl|Hg17|chr11 (68460701-68461128)
               

               
               1-435, gnl|Mm7|chr19 (3160054-3159626)
               


               
               440-564, gnl|bosTau2|chr29 (41758848-41758724)
               

               
               440-564, gnl|canFam2|chr18 (52093528-52093331)
               

               
               440-564, gnl|danRer3|chr18 (25788382-25788203)
               

               
               440-564, gnl|echTel1|scaffold_172156 (5116-4914)
               

               
               440-564, gnl|fr1|chrUn (157368788-157368613)
               

               
               440-564, gnl|hg17|chr11 (68462217-68462415)
               

               
               440-564, gnl|Hg17|chr11 (68462224-68462348)
               

               
               440-564, gnl|loxAfr1|scaffold_32494 (17667-17481)
               

               
               440-564, gnl|mm7|chr19 (3156961-3156771)
               

               
               440-564, gnl|Mm7|chr19 (3156953-3156831)
               

               
               440-564, gnl|monDom2|scaffold_182 (191368-191563)
               

               
               440-564, gnl|panTro1|chr9 (69518777-69518975)
               

               
               440-564, gnl|rheMac2|chr14 (5799655-5799457)
               

               
               440-564, gnl|rn3|chr1 (205947269-205947083)
               

               
               440-564, gnl|tetNig1|chr13 (10808171-10807999)
               

               
               440-564, gnl|xenTro1|scaffold_146 (1656492-1656296)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               eep (0.122564)
               

               
               jca (0.11396)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)
               

               
               jca (0.11396)

	1-435, gnl\|bosTau2\|chr29 (41760612-41760178)
	1-435, gnl\|Hg17\|chr11 (68460701-68461128)
	1-435, gnl\|Mm7\|chr19 (3160054-3159626)

	440-564, gnl\|bosTau2\|chr29 (41758848-41758724)
	440-564, gnl\|canFam2\|chr18 (52093528-52093331)
	440-564, gnl\|danRer3\|chr18 (25788382-25788203)
	440-564, gnl\|echTel1\|scaffold_172156 (5116-4914)
	440-564, gnl\|fr1\|chrUn (157368788-157368613)
	440-564, gnl\|hg17\|chr11 (68462217-68462415)
	440-564, gnl\|Hg17\|chr11 (68462224-68462348)
	440-564, gnl\|loxAfr1\|scaffold_32494 (17667-17481)
	440-564, gnl\|mm7\|chr19 (3156961-3156771)
	440-564, gnl\|Mm7\|chr19 (3156953-3156831)
	440-564, gnl\|monDom2\|scaffold_182 (191368-191563)
	440-564, gnl\|panTro1\|chr9 (69518777-69518975)
	440-564, gnl\|rheMac2\|chr14 (5799655-5799457)
	440-564, gnl\|rn3\|chr1 (205947269-205947083)
	440-564, gnl\|tetNig1\|chr13 (10808171-10807999)
	440-564, gnl\|xenTro1\|scaffold_146 (1656492-1656296)