Ss1.1-Mixn-0030i03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTGAAGCTCCATATAGGATTTTATTTTTAAAAAAGTCATGTGAA------------ ATGGATTCAGTTNAAGCAAGTTCTTACTAGAAACACNACATAAAGACCGTTTAATCTCCG AAGATATTTGACAGCTGTGTTTGTCTCCGCAGAGTTCAGCACATCCTGGGGAACCTTGTG ATGCAGCTTGTTTTGGGGATCCCCTTGGAGATGGTTCATAAAGGCCTCCGGGTGGGGCTG GTGTACCATCCTGTTCATATTTCGAATGCTTGTTCTGGGTGTAGCAGCTGAAGATGTCTG GAATGATGAGCAGTCTGGCTTCATGTGATACACATTTTCACTCGATCTGTGGTTGAAGTT GGGTTCATGATTGGACAGTATCTTCTATATGGATTTCATTTAGAGCCTCTATATAAATGC CAGGGCCATCCGTGTCCAAATATAATTGATTGTTTTGTCTCTAGACGATTCTAAGCAGTC TTCAAGCCATTGGATACAAGGGTTGCCCTCGTCGGTCGCGTGCAATTTTTCTAGACGAGT CGACAAGCCAGCACAGATAGGCTGCCGCAGCACTTCCGAGGTTCCATTTGAGACAGGTCC GCCCACTCTCGGTGTCCAGAGACCCTCCTCTCAGGAACCAGTCCTAGAGCGCCAGGGCTC CGCAGGCCCCGCCCCCTGGCGCCACGCCTATCTTTAGCCCCACCTGGACTCCAGCTCTTT TCCAAAACCTAGCCTCCCGCTAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTGAAGCTCCATATAGGATTTTATTTTTAAAAAAGTCATGTGAA------------ ATGGATTCAGTTNAAGCAAGTTCTTACTAGAAACACNACATAAAGACCGTTTAATCTCCG AAGATATTTGACAGCTGTGTTTGTCTCCGCAGAGTTCAGCACATCCTGGGGAACCTTGTG ATGCAGCTTGTTTTGGGGATCCCCTTGGAGATGGTTCATAAAGGCCTCCGGGTGGGGCTG GTGTACCATCCTGTTCATATTTCGAATGCTTGTTCTGGGTGTAGCAGCTGAAGATGTCTG GAATGATGAGCAGTCTGGCTTCATGTGATACACATTTTCACTCGATCTGTGGTTGAAGTT GGGTTCATGATTGGACAGTATCTTCTATATGGATTTCATTTAGAGCCTCTATATAAATGC CAGGGCCATCCGTGTCCAAATATAATTGATTGTTTTGTCTCTAGACGATTCTAAGCAGTC TTCAAGCCATTGGATACAAGGGTTGCCCTCGTCGGTCGCGTGCAATTTTTCTAGACGAGT CGACAAGCCAGCACAGATAGGCTGCCGCAGCACTTCCGAGGTTCCATTTGAGACAGGTCC GCCCACTCTCGGTGTCCAGAGACCCTCCTCTCAGGAACCAGTCCTAGAGCGCCAGGGCTC CGCAGGCCCCGCCCCCTGGCGCCACGCCTATCTTTAGCCCCACCTGGACTCCAGCTCTTT TCCAAAACCTAGCCTCCCGCTAAG |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 607-732, - strand, RNAz p=0.961643 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 607-732, - strand, RNAz p=0.961643 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 112-235, gnl|bosTau2|chr3 (73408734-73408611) | |
| 112-235, gnl|canFam2|chr15 (6838041-6837905) | |
| 112-235, gnl|danRer3|chr16 (44267428-44267292) | |
| 112-235, gnl|dasNov1|scaffold_5895 (111837-111973) | |
| 112-235, gnl|echTel1|scaffold_313617 (96041-96177) | |
| 112-235, gnl|fr1|chrUn (175006329-175006452) | |
| 112-235, gnl|hg17|chr1 (39046079-39046215) | |
| 112-235, gnl|Hg17|chr1 (39046229-39046105) | |
| 112-235, gnl|loxAfr1|scaffold_9529 (13136-13000) | |
| 112-235, gnl|mm7|chr4 (123262632-123262496) | |
| 112-235, gnl|Mm7|chr4 (123262483-123262604) | |
| 112-235, gnl|oryCun1|scaffold_94673 (5058-5200) | |
| 112-235, gnl|panTro1|chr1 (39897542-39897678) | |
| 112-235, gnl|rheMac2|chr1 (41773899-41774035) | |
| 112-235, gnl|rn3|chr5 (143122260-143122124) | |
| 112-235, gnl|xenTro1|scaffold_442 (356942-357078) | |
| 451-732, gnl|bosTau2|chr3 (73376175-73375905) | |
| 451-732, gnl|canFam2|chr15 (6869120-6868924) | |
| 451-732, gnl|echTel1|scaffold_313617 (45429-45652) | |
| 451-732, gnl|hg17|chr1 (39008332-39008505) | |
| 451-732, gnl|loxAfr1|scaffold_9529 (41226-41035) | |
| 451-732, gnl|mm7|chr4 (123349459-123349282) | |
| 451-732, gnl|panTro1|chr1 (39860361-39860533) | |
| 451-732, gnl|rheMac2|chr1 (41734761-41734934) | |
| 451-732, gnl|rn3|chr5 (143206110-143205934) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 112-235, gnl|bosTau2|chr3 (73408734-73408611) | |
| 112-235, gnl|canFam2|chr15 (6838041-6837905) | |
| 112-235, gnl|danRer3|chr16 (44267428-44267292) | |
| 112-235, gnl|dasNov1|scaffold_5895 (111837-111973) | |
| 112-235, gnl|echTel1|scaffold_313617 (96041-96177) | |
| 112-235, gnl|fr1|chrUn (175006329-175006452) | |
| 112-235, gnl|hg17|chr1 (39046079-39046215) | |
| 112-235, gnl|Hg17|chr1 (39046229-39046105) | |
| 112-235, gnl|loxAfr1|scaffold_9529 (13136-13000) | |
| 112-235, gnl|mm7|chr4 (123262632-123262496) | |
| 112-235, gnl|Mm7|chr4 (123262483-123262604) | |
| 112-235, gnl|oryCun1|scaffold_94673 (5058-5200) | |
| 112-235, gnl|panTro1|chr1 (39897542-39897678) | |
| 112-235, gnl|rheMac2|chr1 (41773899-41774035) | |
| 112-235, gnl|rn3|chr5 (143122260-143122124) | |
| 112-235, gnl|xenTro1|scaffold_442 (356942-357078) | |
| 451-732, gnl|bosTau2|chr3 (73376175-73375905) | |
| 451-732, gnl|canFam2|chr15 (6869120-6868924) | |
| 451-732, gnl|echTel1|scaffold_313617 (45429-45652) | |
| 451-732, gnl|hg17|chr1 (39008332-39008505) | |
| 451-732, gnl|loxAfr1|scaffold_9529 (41226-41035) | |
| 451-732, gnl|mm7|chr4 (123349459-123349282) | |
| 451-732, gnl|panTro1|chr1 (39860361-39860533) | |
| 451-732, gnl|rheMac2|chr1 (41734761-41734934) | |
| 451-732, gnl|rn3|chr5 (143206110-143205934) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.175593) |