Ss1.1-Mixn-0030m02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGACGTCTCGACCCGCGTTGGACCCGAGGCCGGACCGGCCGCTTCGCAGCCGACGCCAG CCCCGGGCCTGGGAGGAACAAGCGCCCCGGGACCACCTGCCGCGGGTACCATGGGTGCTG CCCACTCCGCGTCCGAGGAGGTCCGGGAGCTCGTGGGCAAGACCGGCTTCTCATCAGACC AGATCGAGCAGCTCCACCGGAGGTTTAAGCAGCTGAGTGGAGACCAACCCACCATTCGCA AGGAGAACTTCAACAATGTCCCTGACCTGGAGCTCAACCCGATCCGATCCAAAATCGTCC GTGCCTTCTTTGACAACAGAAACCTGCGCAAGGGCACCAGCGGCCTGGCCGATGAGATCA ACTTCGAGGACTTCCTGACCATCATGTCCTACTTCCGGCCCATTGACATCACCATGGACG AGGAGCAGGTGCAGCTGTGCCGGAAAGAGAAGCTGAGATTTCTGTTCCACATGTACGACT CGGACAGCGATGGCCGCATCACCCTGGAAGAGTACCGAAATGTGGTGGAGGAGCTGCTCT CAGGAAACCCCCACATCGAGAAGGAGTCTGCGCGCTCCATCGCCGATGGGGCCATGATGG AGGCGGCCAGCGTCTGTGTGGGGCAGATGGAGCCTGATCAGGTGTACGAGGGGATCACCT TCGATGACTTCCTGAAGATTTGGCAGGGGATCGACATCGAGACCAAGATGCACGTCCGCT TCCTTAACATGGAAACCATGGCCCTGTGCCATTGAGCCCCCGGCCCCCTGGAGAACCCAC AAGTGGACCTGGGCAGCGAGACCTGGGGGCCCTTTTGCTACAGCTCTTGTAAATAGTCTA CACTCCTCGCCCATCTCTTTTCCTGCAGGGTATGGTATGTGGGACCTTGCTGTTTTTATT TCTAATAAAAAACAAAAAGGGTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGACGTCTCGACCCGCGTTGGACCCGAGGCCGGACCGGCCGCTTCGCAGCCGACGCCAG CCCCGGGCCTGGGAGGAACAAGCGCCCCGGGACCACCTGCCGCGGGTACCATGGGTGCTG CCCACTCCGCGTCCGAGGAGGTCCGGGAGCTCGTGGGCAAGACCGGCTTCTCATCAGACC AGATCGAGCAGCTCCACCGGAGGTTTAAGCAGCTGAGTGGAGACCAACCCACCATTCGCA AGGAGAACTTCAACAATGTCCCTGACCTGGAGCTCAACCCGATCCGATCCAAAATCGTCC GTGCCTTCTTTGACAACAGAAACCTGCGCAAGGGCACCAGCGGCCTGGCCGATGAGATCA ACTTCGAGGACTTCCTGACCATCATGTCCTACTTCCGGCCCATTGACATCACCATGGACG AGGAGCAGGTGCAGCTGTGCCGGAAAGAGAAGCTGAGATTTCTGTTCCACATGTACGACT CGGACAGCGATGGCCGCATCACCCTGGAAGAGTACCGAAATGTGGTGGAGGAGCTGCTCT CAGGAAACCCCCACATCGAGAAGGAGTCTGCGCGCTCCATCGCCGATGGGGCCATGATGG AGGCGGCCAGCGTCTGTGTGGGGCAGATGGAGCCTGATCAGGTGTACGAGGGGATCACCT TCGATGACTTCCTGAAGATTTGGCAGGGGATCGACATCGAGACCAAGATGCACGTCCGCT TCCTTAACATGGAAACCATGGCCCTGTGCCATTGAGCCCCCGGCCCCCTGGAGAACCCAC AAGTGGACCTGGGCAGCGAGACCTGGGGGCCCTTTTGCTACAGCTCTTGTAAATAGTCTA CACTCCTCGCCCATCTCTTTTCCTGCAGGGTATGGTATGTGGGACCTTGCTGTTTTTATT TCTAATAAAAAACAAAAAGGGTTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
| 5-168, gnl|bosTau2|chr17 (33256066-33256234) | |
| 5-168, gnl|echTel1|scaffold_184060 (6102-6867) | |
| 5-168, gnl|hg17|chr12 (115998948-115999926) | |
| 5-168, gnl|Hg17|chr12 (115999913-115999750) | |
| 5-168, gnl|loxAfr1|scaffold_51615 (2474-3358) | |
| 5-168, gnl|mm7|chr5 (117257568-117256829) | |
| 5-168, gnl|Mm7|chr5 (117256842-117256978) | |
| 5-168, gnl|oryCun1|scaffold_201186 (190651-191500) | |
| 5-168, gnl|panTro1|chr10 (118972416-118973395) | |
| 5-168, gnl|rheMac2|chr11 (118043460-118044465) | |
| 5-168, gnl|rn3|chr12 (39566308-39567043) | |
| 304-468, gnl|bosTau2|chr17 (33311504-33311669) | |
| 304-468, gnl|canFam2|chr26 (16678546-16678669) | |
| 304-468, gnl|dasNov1|scaffold_82015 (564-434) | |
| 304-468, gnl|echTel1|scaffold_316553 (339-212) | |
| 304-468, gnl|fr1|chrUn (66508026-66508149) | |
| 304-468, gnl|galGal2|chr15 (11154461-11154351) | |
| 304-468, gnl|hg17|chr12 (115949520-115949650) | |
| 304-468, gnl|Hg17|chr12 (115949700-115949535) | |
| 304-468, gnl|loxAfr1|scaffold_75201 (10720-10850) | |
| 304-468, gnl|mm7|chr5 (117283979-117283856) | |
| 304-468, gnl|Mm7|chr5 (117283802-117283969) | |
| 304-468, gnl|monDom2|scaffold_101 (3880600-3880468) | |
| 304-468, gnl|oryCun1|scaffold_178370 (7002-6881) | |
| 304-468, gnl|panTro1|chr10 (118922842-118922972) | |
| 304-468, gnl|rheMac2|chr11 (117994233-117994363) | |
| 304-468, gnl|rn3|chr12 (39540212-39540335) | |
| 304-468, gnl|tetNig1|chr12 (4571874-4571982) | |
| 304-468, gnl|xenTro1|scaffold_2 (43919-44032) | |
| 515-630, gnl|bosTau2|chr17 (33313509-33313624) | |
| 515-630, gnl|canFam2|chr26 (16676326-16676441) | |
| 515-630, gnl|echTel1|scaffold_316553 (2196-2081) | |
| 515-630, gnl|fr1|chrUn (66507582-66507694) | |
| 515-630, gnl|galGal2|chr15 (11154778-11154668) | |
| 515-630, gnl|hg17|chr12 (115947080-115947195) | |
| 515-630, gnl|Hg17|chr12 (115947199-115947083) | |
| 515-630, gnl|mm7|chr5 (117285641-117285526) | |
| 515-630, gnl|Mm7|chr5 (117285521-117285636) | |
| 515-630, gnl|monDom2|scaffold_101 (3888180-3888065) | |
| 515-630, gnl|oryCun1|scaffold_207260 (41572-41485) | |
| 515-630, gnl|panTro1|chr10 (118919472-118919587) | |
| 515-630, gnl|rheMac2|chr11 (117991817-117991932) | |
| 515-630, gnl|rn3|chr12 (39538540-39538655) | |
| 515-630, gnl|tetNig1|chr12 (4570258-4570349) | |
| 515-630, gnl|xenTro1|scaffold_2 (42739-42855) | |
| 676-924, gnl|bosTau2|chr17 (33320199-33320447) | |
| 676-924, gnl|dasNov1|scaffold_87135 (6858-7045) | |
| 676-924, gnl|echTel1|scaffold_316553 (5024-4834) | |
| 676-924, gnl|hg17|chr12 (115939429-115939636) | |
| 676-924, gnl|Hg17|chr12 (115939737-115939457) | |
| 676-924, gnl|loxAfr1|scaffold_75201 (331-546) | |
| 676-924, gnl|mm7|chr5 (117290885-117290698) | |
| 676-924, gnl|Mm7|chr5 (117290591-117290853) | |
| 676-924, gnl|monDom2|scaffold_101 (3895350-3895136) | |
| 676-924, gnl|oryCun1|scaffold_193227 (6962-7100) | |
| 676-924, gnl|panTro1|chr10 (118911772-118911978) | |
| 676-924, gnl|rheMac2|chr11 (117983683-117983894) | |
| 676-924, gnl|rn3|chr12 (39533080-39533247) |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-168, gnl|bosTau2|chr17 (33256066-33256234) | |
| 5-168, gnl|echTel1|scaffold_184060 (6102-6867) | |
| 5-168, gnl|hg17|chr12 (115998948-115999926) | |
| 5-168, gnl|Hg17|chr12 (115999913-115999750) | |
| 5-168, gnl|loxAfr1|scaffold_51615 (2474-3358) | |
| 5-168, gnl|mm7|chr5 (117257568-117256829) | |
| 5-168, gnl|Mm7|chr5 (117256842-117256978) | |
| 5-168, gnl|oryCun1|scaffold_201186 (190651-191500) | |
| 5-168, gnl|panTro1|chr10 (118972416-118973395) | |
| 5-168, gnl|rheMac2|chr11 (118043460-118044465) | |
| 5-168, gnl|rn3|chr12 (39566308-39567043) | |
| 304-468, gnl|bosTau2|chr17 (33311504-33311669) | |
| 304-468, gnl|canFam2|chr26 (16678546-16678669) | |
| 304-468, gnl|dasNov1|scaffold_82015 (564-434) | |
| 304-468, gnl|echTel1|scaffold_316553 (339-212) | |
| 304-468, gnl|fr1|chrUn (66508026-66508149) | |
| 304-468, gnl|galGal2|chr15 (11154461-11154351) | |
| 304-468, gnl|hg17|chr12 (115949520-115949650) | |
| 304-468, gnl|Hg17|chr12 (115949700-115949535) | |
| 304-468, gnl|loxAfr1|scaffold_75201 (10720-10850) | |
| 304-468, gnl|mm7|chr5 (117283979-117283856) | |
| 304-468, gnl|Mm7|chr5 (117283802-117283969) | |
| 304-468, gnl|monDom2|scaffold_101 (3880600-3880468) | |
| 304-468, gnl|oryCun1|scaffold_178370 (7002-6881) | |
| 304-468, gnl|panTro1|chr10 (118922842-118922972) | |
| 304-468, gnl|rheMac2|chr11 (117994233-117994363) | |
| 304-468, gnl|rn3|chr12 (39540212-39540335) | |
| 304-468, gnl|tetNig1|chr12 (4571874-4571982) | |
| 304-468, gnl|xenTro1|scaffold_2 (43919-44032) | |
| 515-630, gnl|bosTau2|chr17 (33313509-33313624) | |
| 515-630, gnl|canFam2|chr26 (16676326-16676441) | |
| 515-630, gnl|echTel1|scaffold_316553 (2196-2081) | |
| 515-630, gnl|fr1|chrUn (66507582-66507694) | |
| 515-630, gnl|galGal2|chr15 (11154778-11154668) | |
| 515-630, gnl|hg17|chr12 (115947080-115947195) | |
| 515-630, gnl|Hg17|chr12 (115947199-115947083) | |
| 515-630, gnl|mm7|chr5 (117285641-117285526) | |
| 515-630, gnl|Mm7|chr5 (117285521-117285636) | |
| 515-630, gnl|monDom2|scaffold_101 (3888180-3888065) | |
| 515-630, gnl|oryCun1|scaffold_207260 (41572-41485) | |
| 515-630, gnl|panTro1|chr10 (118919472-118919587) | |
| 515-630, gnl|rheMac2|chr11 (117991817-117991932) | |
| 515-630, gnl|rn3|chr12 (39538540-39538655) | |
| 515-630, gnl|tetNig1|chr12 (4570258-4570349) | |
| 515-630, gnl|xenTro1|scaffold_2 (42739-42855) | |
| 676-924, gnl|bosTau2|chr17 (33320199-33320447) | |
| 676-924, gnl|dasNov1|scaffold_87135 (6858-7045) | |
| 676-924, gnl|echTel1|scaffold_316553 (5024-4834) | |
| 676-924, gnl|hg17|chr12 (115939429-115939636) | |
| 676-924, gnl|Hg17|chr12 (115939737-115939457) | |
| 676-924, gnl|loxAfr1|scaffold_75201 (331-546) | |
| 676-924, gnl|mm7|chr5 (117290885-117290698) | |
| 676-924, gnl|Mm7|chr5 (117290591-117290853) | |
| 676-924, gnl|monDom2|scaffold_101 (3895350-3895136) | |
| 676-924, gnl|oryCun1|scaffold_193227 (6962-7100) | |
| 676-924, gnl|panTro1|chr10 (118911772-118911978) | |
| 676-924, gnl|rheMac2|chr11 (117983683-117983894) | |
| 676-924, gnl|rn3|chr12 (39533080-39533247) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| hlv (0.557025) | |
| pty (0.285429) | |
| cga (0.279096) | |
| mcp (0.170648) | |
| csp (0.161186) | |
| lnt (0.142308) | |
| eru (0.120048) | |
| ecc (0.115035) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hlv (0.557025) | |
| pty (0.285429) | |
| cga (0.279096) | |
| mcp (0.170648) | |
| csp (0.161186) | |
| lnt (0.142308) | |
| eru (0.120048) | |
| ecc (0.115035) |