Ss1.1-Mixn-0030m20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGGACCTTCCGGGCTTTTCAGCGTTGTGCCACCTCCTGACTTTCAGGTGGCTCTGGAGG AGAAGAAAGTGGAGCTGTCTCAGGCTCTCCCTGGAGGCCCAGACCCCTCTGCTCCCCATG GGCAGCTGCCAGGCAGGGCACAACCTGCATCTCTGCCTGGCCCACCACCCACCTCTGGTC TGTGCCACTTTGATCCTGCTGCTTCTTGGCCTTTCTGGCCTGGGCCTTGGTGGCTTCCTC CTCACCCACAGGACTGGCCTGCGCAGCCCTGACATCCCCCAGGACTGGGTCTCCTTCTTG AGATTGTTTGGCCAGTTGACCTTGTGCCCTGTGAATGGGACAGTTACAGGGAAGTCGCAT GAGTCTCACGTCGTGGGCTTACTGACCACCTTGAATTTCGGAGATGATCCAGACGGGAAC AAGACCCAGACATTCCAAGCCCAGGTCCCCAGGAGTCAGATGGGATTGAAAGGATCTTCT GGAAGCGATCTGGTCCTCATTACAGCCAGGGTGACCACAGAAAGGACCTGCCTATATTTC AGTGCTGCTCCAGGAATCCTGCCTTCCAGCAAGCCACCCATGTCCTGCTCTGAGGAGGGA GTAGGAAATACCACCCTGAGCCTTATGGCTGAGGGGTGTGTCAGTGTCTGGAGCCACGAA GGTCTTGTGCTCACCAAGTTGCTCACCTCGGAGGAGCTGGCTCTGTGTGGCTCCAGGCTG CTGGTTTTGGGCTCGTTCCTGCTTCTCTTCTGTGGCCCTCTCTGCTGTCTCACTGCTCTG TGCTTCCCCCCGCGCCGGGAGTCCCACTGGTCTAGAACCCGGCTCTGAGGGCACTGGCCT AGTTCCTGTCTCGTTCTCAGGTGTGAACTTCTTGGGTCTTCGTTCGGAGTTGGAAGAGAT GTTACAAAAAGTGGAGAGCTGGAATGTGGGAGGAAATAAAAGGCTTTTTTTTTTGCCAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGGACCTTCCGGGCTTTTCAGCGTTGTGCCACCTCCTGACTTTCAGGTGGCTCTGGAGG AGAAGAAAGTGGAGCTGTCTCAGGCTCTCCCTGGAGGCCCAGACCCCTCTGCTCCCCATG GGCAGCTGCCAGGCAGGGCACAACCTGCATCTCTGCCTGGCCCACCACCCACCTCTGGTC TGTGCCACTTTGATCCTGCTGCTTCTTGGCCTTTCTGGCCTGGGCCTTGGTGGCTTCCTC CTCACCCACAGGACTGGCCTGCGCAGCCCTGACATCCCCCAGGACTGGGTCTCCTTCTTG AGATTGTTTGGCCAGTTGACCTTGTGCCCTGTGAATGGGACAGTTACAGGGAAGTCGCAT GAGTCTCACGTCGTGGGCTTACTGACCACCTTGAATTTCGGAGATGATCCAGACGGGAAC AAGACCCAGACATTCCAAGCCCAGGTCCCCAGGAGTCAGATGGGATTGAAAGGATCTTCT GGAAGCGATCTGGTCCTCATTACAGCCAGGGTGACCACAGAAAGGACCTGCCTATATTTC AGTGCTGCTCCAGGAATCCTGCCTTCCAGCAAGCCACCCATGTCCTGCTCTGAGGAGGGA GTAGGAAATACCACCCTGAGCCTTATGGCTGAGGGGTGTGTCAGTGTCTGGAGCCACGAA GGTCTTGTGCTCACCAAGTTGCTCACCTCGGAGGAGCTGGCTCTGTGTGGCTCCAGGCTG CTGGTTTTGGGCTCGTTCCTGCTTCTCTTCTGTGGCCCTCTCTGCTGTCTCACTGCTCTG TGCTTCCCCCCGCGCCGGGAGTCCCACTGGTCTAGAACCCGGCTCTGAGGGCACTGGCCT AGTTCCTGTCTCGTTCTCAGGTGTGAACTTCTTGGGTCTTCGTTCGGAGTTGGAAGAGAT GTTACAAAAAGTGGAGAGCTGGAATGTGGGAGGAAATAAAAGGCTTTTTTTTTTGCCAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 81-657, + strand, RNAz p=0.996561 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 81-657, + strand, RNAz p=0.996561 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_194280, + |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 81-283, gnl|bosTau2|chr25 (24667218-24667420) | |
| 81-283, gnl|canFam2|chr6 (21013702-21014196) | |
| 81-283, gnl|dasNov1|scaffold_23334 (74581-74079) | |
| 81-283, gnl|echTel1|scaffold_85062 (7929-7415) | |
| 81-283, gnl|hg17|chr16 (29881902-29882412) | |
| 81-283, gnl|Hg17|chr16 (29881929-29882131) | |
| 81-283, gnl|loxAfr1|scaffold_17012 (4446-3943) | |
| 81-283, gnl|mm7|chr7 (122993814-122993308) | |
| 81-283, gnl|Mm7|chr7 (122993785-122993583) | |
| 81-283, gnl|monDom2|scaffold_5 (119779081-119778585) | |
| 81-283, gnl|oryCun1|scaffold_204194 (98309-97809) | |
| 81-283, gnl|panTro1|chr18 (30642891-30643409) | |
| 81-283, gnl|rheMac2|chr20 (27930828-27931346) | |
| 81-283, gnl|rn3|chr1 (186226868-186226340) | |
| 81-283, gnl|xenTro1|scaffold_2065 (44355-44850) | |
| 471-697, gnl|bosTau2|chr25 (25320290-25320529) | |
| 471-697, gnl|canFam2|chr6 (21019654-21019936) | |
| 471-697, gnl|dasNov1|scaffold_101070 (2047-1765) | |
| 471-697, gnl|echTel1|scaffold_178138 (1333-974) | |
| 471-697, gnl|hg17|chr16 (29886809-29887091) | |
| 471-697, gnl|Hg17|chr16 (29886845-29887084) | |
| 471-697, gnl|loxAfr1|scaffold_34517 (19728-19446) | |
| 471-697, gnl|mm7|chr7 (122988428-122988148) | |
| 471-697, gnl|Mm7|chr7 (122988392-122988153) | |
| 471-697, gnl|monDom2|scaffold_5 (119777397-119777104) | |
| 471-697, gnl|oryCun1|scaffold_171640 (1349-1630) | |
| 471-697, gnl|panTro1|chr18 (30647853-30648135) | |
| 471-697, gnl|rheMac2|chr20 (27936357-27936634) | |
| 471-697, gnl|rn3|chr1 (186221133-186220853) | |
| 834-950, gnl|bosTau2|chr25 (25323695-25323814) | |
| 834-950, gnl|canFam2|chr6 (21022446-21022903) | |
| 834-950, gnl|dasNov1|scaffold_23334 (42321-41857) | |
| 834-950, gnl|echTel1|scaffold_322509 (11586-11137) | |
| 834-950, gnl|hg17|chr16 (29891472-29891927) | |
| 834-950, gnl|Hg17|chr16 (29891740-29891865) | |
| 834-950, gnl|loxAfr1|scaffold_34517 (16506-16033) | |
| 834-950, gnl|mm7|chr7 (122983153-122982741) | |
| 834-950, gnl|Mm7|chr7 (122982900-122982783) | |
| 834-950, gnl|oryCun1|scaffold_171640 (4007-4445) | |
| 834-950, gnl|panTro1|chr18 (30653422-30653877) | |
| 834-950, gnl|rheMac2|chr20 (27939748-27940201) | |
| 834-950, gnl|rn3|chr1 (186215881-186215445) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 81-283, gnl|bosTau2|chr25 (24667218-24667420) | |
| 81-283, gnl|canFam2|chr6 (21013702-21014196) | |
| 81-283, gnl|dasNov1|scaffold_23334 (74581-74079) | |
| 81-283, gnl|echTel1|scaffold_85062 (7929-7415) | |
| 81-283, gnl|hg17|chr16 (29881902-29882412) | |
| 81-283, gnl|Hg17|chr16 (29881929-29882131) | |
| 81-283, gnl|loxAfr1|scaffold_17012 (4446-3943) | |
| 81-283, gnl|mm7|chr7 (122993814-122993308) | |
| 81-283, gnl|Mm7|chr7 (122993785-122993583) | |
| 81-283, gnl|monDom2|scaffold_5 (119779081-119778585) | |
| 81-283, gnl|oryCun1|scaffold_204194 (98309-97809) | |
| 81-283, gnl|panTro1|chr18 (30642891-30643409) | |
| 81-283, gnl|rheMac2|chr20 (27930828-27931346) | |
| 81-283, gnl|rn3|chr1 (186226868-186226340) | |
| 81-283, gnl|xenTro1|scaffold_2065 (44355-44850) | |
| 471-697, gnl|bosTau2|chr25 (25320290-25320529) | |
| 471-697, gnl|canFam2|chr6 (21019654-21019936) | |
| 471-697, gnl|dasNov1|scaffold_101070 (2047-1765) | |
| 471-697, gnl|echTel1|scaffold_178138 (1333-974) | |
| 471-697, gnl|hg17|chr16 (29886809-29887091) | |
| 471-697, gnl|Hg17|chr16 (29886845-29887084) | |
| 471-697, gnl|loxAfr1|scaffold_34517 (19728-19446) | |
| 471-697, gnl|mm7|chr7 (122988428-122988148) | |
| 471-697, gnl|Mm7|chr7 (122988392-122988153) | |
| 471-697, gnl|monDom2|scaffold_5 (119777397-119777104) | |
| 471-697, gnl|oryCun1|scaffold_171640 (1349-1630) | |
| 471-697, gnl|panTro1|chr18 (30647853-30648135) | |
| 471-697, gnl|rheMac2|chr20 (27936357-27936634) | |
| 471-697, gnl|rn3|chr1 (186221133-186220853) | |
| 834-950, gnl|bosTau2|chr25 (25323695-25323814) | |
| 834-950, gnl|canFam2|chr6 (21022446-21022903) | |
| 834-950, gnl|dasNov1|scaffold_23334 (42321-41857) | |
| 834-950, gnl|echTel1|scaffold_322509 (11586-11137) | |
| 834-950, gnl|hg17|chr16 (29891472-29891927) | |
| 834-950, gnl|Hg17|chr16 (29891740-29891865) | |
| 834-950, gnl|loxAfr1|scaffold_34517 (16506-16033) | |
| 834-950, gnl|mm7|chr7 (122983153-122982741) | |
| 834-950, gnl|Mm7|chr7 (122982900-122982783) | |
| 834-950, gnl|oryCun1|scaffold_171640 (4007-4445) | |
| 834-950, gnl|panTro1|chr18 (30653422-30653877) | |
| 834-950, gnl|rheMac2|chr20 (27939748-27940201) | |
| 834-950, gnl|rn3|chr1 (186215881-186215445) |
| Expressed library(ies): 20 entry(ies) | More info |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
| nje (0.33184) | |
| cki (0.330469) | |
| cag (0.302389) | |
| cov (0.264306) | |
| pgl (0.236967) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| duo (0.172801) | |
| ctl (0.153069) | |
| cli (0.152812) | |
| pty (0.142714) | |
| cst (0.140036) | |
| nca (0.136874) | |
| pla (0.133672) | |
| ute (0.132784) | |
| ese (0.126502) | |
| cly (0.120642) | |
| eru (0.120048) |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.33184) | |
| cki (0.330469) | |
| cag (0.302389) | |
| cov (0.264306) | |
| pgl (0.236967) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| duo (0.172801) | |
| ctl (0.153069) | |
| cli (0.152812) | |
| pty (0.142714) | |
| cst (0.140036) | |
| nca (0.136874) | |
| pla (0.133672) | |
| ute (0.132784) | |
| ese (0.126502) | |
| cly (0.120642) | |
| eru (0.120048) |