Non-Coding RNA Search

Ss1.1-Mixn-0030n07.5

Sequence:


               
               GCGGCCGCAACAGCCCGGGCGCCGGACCCCGGCCCGAGGGCGAGCCCATGCTCACGCCGT
CGGAAGGCAGCGACACCAGCGCCGCGCCCCTCTCCGAGCCCGGCCGGCCGGGCCAGCGCC
GCTGCTCTAGCCGCGACAACCTCAAGGGCGGCGGGGCCGGCGCGCTGGAGAAGGAGAGCA
AGCGCCGCTCGTACCCGCTCAACACAGCCAGCCTGAATGGCGCCCCGAAGGGCGGCAAAT
ACGACGACATCACCTTGACCGGCACGGAGGCGGCCGGGAGCGGCTGTATGAAGACTGGCC
TCTGGAAGAGCGAGACCACGGTCTAGGGTGGGGGCGGGCGCCGCTTTAGGATGTGCTGGC
CGCGTGGGCTTGTGACCCCGCTTCTCGGGAGCCCTCAAAGACGTCTATCGGTACGTCCCC
AGGTTTGAGGGAGAGGTGCCTCAGTAGCTTTAGTCCTGGAGGCTGGGGAAGGGATAGGCA
GAGGCCCGTCTCTACTAAGAGGTCCATCCCTCCGGGTGTAGCGACTGACAATCCCAGAAC
CGCTGGCAGGATATATTTCCGTCCCATATAGGGTTGGGGGGAAGGTCCTGTCCGTCTGTG
AAGTGACTGAGAGTGGAAGGGACGGCACAACTCAGGCGGGCTCCTCCTAAGGTACCCCCT
GCGCCTGCCCACATCACCTCACTCGTGGCCATCAGCCTCATCAGGAGAACACAGACAGCG
GGAGCTTGGGGAGGGCATTCTCACTGCCCTTCACTAAAGCCCCCATCCTAGGCCTCTCTC
CCACCCAGTTTTTTGGCTAATTAGGGAGCCAATCTAGCAGATGAGCCAGGTGACCAGGAC
CAATGGGAGGGAAACAGGTGCTGCTTTTCGAATTAACTATGCAAGAGAGGGCGGGAGGAT
GTGAAAGGCAGCTGTGGGGATCAGTCAGCTCTGAGGAGGGGTGGGCACAATTAGGGCCGA
ACACCACTCCCACAGGACTGGTACACAAACCCCACAGCAGGGCTCAGGGGTGGCACTTCA
GGACAAAGCCCAGCCCTACACCTAAGAAGCTAACTGCCAGACACGTGGGGATAACTCGAA
GGTAGCAGAGATCGCTGGCGCTCAGATGGGGGGCTGAAGGTGGCCATGCCTTAAGCCAGG
TCCTATCAATGCTCTGCAGATGGGCGCCACCGCCAGGCTGCAGGTGGTGCCGAAAGCACT
TACTGTTCAGTTGTGGGACCCACACTCCCAGCCCCAGCCTCCCAGGCACTGAGGGGGCGC
ACTCCCTGCCTCCAGGAAGCCATGCTGGAGAATCATTCCTGAGACCTGACCTTTAGCTCC
ATATTAGGGAGAAATCTCCAAAACATCAAAGCAGCTTCCTCCCTCACAGGAGCCCAAGCC
AGTTCCCTGAGGCAGTATGTGGGGCTCCTGCTGCTCACCTGGGGCCTGAGCCTCTGCTAC
TTTTAAACACCAGCACTCCTTAGTATTTTTCCCCAACCTAAAAGGCAACCTTTGATTATA
GGACCCATGGAGAGCAGAGGGAACCTTGGGTGCTATGAAGAGCAACAGGGAAACCAGGCC
TGGGGCAGGTCCCCTCCCAACTCCCAGGTCACCCCAGCCTGGTCACCAAGGTTAGAGAAG
ACTGAGAGGAAGGGAGAAAACCCACACACCTTGTGATGGATCCTGTTACTTATGCTTGCT
GCACAGACAATATTAGACAGGAACCGAAAAAAGAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGCAACAGCCCGGGCGCCGGACCCCGGCCCGAGGGCGAGCCCATGCTCACGCCGT
CGGAAGGCAGCGACACCAGCGCCGCGCCCCTCTCCGAGCCCGGCCGGCCGGGCCAGCGCC
GCTGCTCTAGCCGCGACAACCTCAAGGGCGGCGGGGCCGGCGCGCTGGAGAAGGAGAGCA
AGCGCCGCTCGTACCCGCTCAACACAGCCAGCCTGAATGGCGCCCCGAAGGGCGGCAAAT
ACGACGACATCACCTTGACCGGCACGGAGGCGGCCGGGAGCGGCTGTATGAAGACTGGCC
TCTGGAAGAGCGAGACCACGGTCTAGGGTGGGGGCGGGCGCCGCTTTAGGATGTGCTGGC
CGCGTGGGCTTGTGACCCCGCTTCTCGGGAGCCCTCAAAGACGTCTATCGGTACGTCCCC
AGGTTTGAGGGAGAGGTGCCTCAGTAGCTTTAGTCCTGGAGGCTGGGGAAGGGATAGGCA
GAGGCCCGTCTCTACTAAGAGGTCCATCCCTCCGGGTGTAGCGACTGACAATCCCAGAAC
CGCTGGCAGGATATATTTCCGTCCCATATAGGGTTGGGGGGAAGGTCCTGTCCGTCTGTG
AAGTGACTGAGAGTGGAAGGGACGGCACAACTCAGGCGGGCTCCTCCTAAGGTACCCCCT
GCGCCTGCCCACATCACCTCACTCGTGGCCATCAGCCTCATCAGGAGAACACAGACAGCG
GGAGCTTGGGGAGGGCATTCTCACTGCCCTTCACTAAAGCCCCCATCCTAGGCCTCTCTC
CCACCCAGTTTTTTGGCTAATTAGGGAGCCAATCTAGCAGATGAGCCAGGTGACCAGGAC
CAATGGGAGGGAAACAGGTGCTGCTTTTCGAATTAACTATGCAAGAGAGGGCGGGAGGAT
GTGAAAGGCAGCTGTGGGGATCAGTCAGCTCTGAGGAGGGGTGGGCACAATTAGGGCCGA
ACACCACTCCCACAGGACTGGTACACAAACCCCACAGCAGGGCTCAGGGGTGGCACTTCA
GGACAAAGCCCAGCCCTACACCTAAGAAGCTAACTGCCAGACACGTGGGGATAACTCGAA
GGTAGCAGAGATCGCTGGCGCTCAGATGGGGGGCTGAAGGTGGCCATGCCTTAAGCCAGG
TCCTATCAATGCTCTGCAGATGGGCGCCACCGCCAGGCTGCAGGTGGTGCCGAAAGCACT
TACTGTTCAGTTGTGGGACCCACACTCCCAGCCCCAGCCTCCCAGGCACTGAGGGGGCGC
ACTCCCTGCCTCCAGGAAGCCATGCTGGAGAATCATTCCTGAGACCTGACCTTTAGCTCC
ATATTAGGGAGAAATCTCCAAAACATCAAAGCAGCTTCCTCCCTCACAGGAGCCCAAGCC
AGTTCCCTGAGGCAGTATGTGGGGCTCCTGCTGCTCACCTGGGGCCTGAGCCTCTGCTAC
TTTTAAACACCAGCACTCCTTAGTATTTTTCCCCAACCTAAAAGGCAACCTTTGATTATA
GGACCCATGGAGAGCAGAGGGAACCTTGGGTGCTATGAAGAGCAACAGGGAAACCAGGCC
TGGGGCAGGTCCCCTCCCAACTCCCAGGTCACCCCAGCCTGGTCACCAAGGTTAGAGAAG
ACTGAGAGGAAGGGAGAAAACCCACACACCTTGTGATGGATCCTGTTACTTATGCTTGCT
GCACAGACAATATTAGACAGGAACCGAAAAAAGAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-945, gnl|bosTau2|chr27 (20976140-20977105)
               

               
               1-945, gnl|Hg17|chr8 (37818712-37819636)
               

               
               1-945, gnl|Mm7|chr8 (25877285-25878170)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-945, gnl|bosTau2|chr27 (20976140-20977105)
               

               
               1-945, gnl|Hg17|chr8 (37818712-37819636)
               

               
               1-945, gnl|Mm7|chr8 (25877285-25878170)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

Help | Less info


               
               eep (0.367692)
               

               
               fty (0.351679)
               

               
               pla (0.267344)
               

               
               cov (0.264306)
               

               
               ese (0.253004)
               

               
               jca (0.22792)
               

               
               sto (0.179824)
               

               
               fhi (0.169578)
               

               
               nca (0.136874)
               

               
               eje (0.0988338)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.367692)
               

               
               fty (0.351679)
               

               
               pla (0.267344)
               

               
               cov (0.264306)
               

               
               ese (0.253004)
               

               
               jca (0.22792)
               

               
               sto (0.179824)
               

               
               fhi (0.169578)
               

               
               nca (0.136874)
               

               
               eje (0.0988338)

	1-945, gnl\|bosTau2\|chr27 (20976140-20977105)
	1-945, gnl\|Hg17\|chr8 (37818712-37819636)
	1-945, gnl\|Mm7\|chr8 (25877285-25878170)

	eep (0.367692)
	fty (0.351679)
	pla (0.267344)
	cov (0.264306)
	ese (0.253004)
	jca (0.22792)
	sto (0.179824)
	fhi (0.169578)
	nca (0.136874)
	eje (0.0988338)