Ss1.1-Mixn-0030n17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCTCAGCAAGGATGCCTGGGATGAGGCCGGCTGGTTCCTGTGACAGGACAGGCCCATCC TGCCTGCTTGGCCTGTTTCCCGGCCCCAGAAGCCAGCAGGCCTCCCTCCTGCAGGGTTAC TGACAGGCCGAGGGCCTGGGGCACAGATGTTCAACCAGCGCAGCCCCCGCACTGCTTCTT CCTGTGTTTCTGTCAACAGGAAATCCCCTGCAGGACAACCTCTGGGAAACCATGGGGAGA CTTTTACATTGATGAAACCTGGCTGTTTCTGAGGCTTCACTGGTGGACAAGCAAGTAGGA AATCGCTAAGCGGTATTTAGTGCGACACTGGGAACATCCAGGTCACAAGGGAGCTGGCTG GGTCACCTCCCATATGCCAGGTGTCATTCCTGCTTCTGTGTTCCCACAGGCTCCTCCCAC CCCCAACTTTTTGGAGAAGAGGGCACAGGCCAAGAGGTTGAGGGAACAGACAGCTCCAGT GGGACTGGACAGAATTTCCATCTGGAAACTGAGCAATGGAGGGTTAGTTTCAATTTGGAA GTACCTCCCATAGACAGCAGGAACTCAGGGTTTCACAGACCTTAGCTGTGCTCTGAACTG TTTTTGATTATAATACAGGCTCATTGGAAGACATTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCTCAGCAAGGATGCCTGGGATGAGGCCGGCTGGTTCCTGTGACAGGACAGGCCCATCC TGCCTGCTTGGCCTGTTTCCCGGCCCCAGAAGCCAGCAGGCCTCCCTCCTGCAGGGTTAC TGACAGGCCGAGGGCCTGGGGCACAGATGTTCAACCAGCGCAGCCCCCGCACTGCTTCTT CCTGTGTTTCTGTCAACAGGAAATCCCCTGCAGGACAACCTCTGGGAAACCATGGGGAGA CTTTTACATTGATGAAACCTGGCTGTTTCTGAGGCTTCACTGGTGGACAAGCAAGTAGGA AATCGCTAAGCGGTATTTAGTGCGACACTGGGAACATCCAGGTCACAAGGGAGCTGGCTG GGTCACCTCCCATATGCCAGGTGTCATTCCTGCTTCTGTGTTCCCACAGGCTCCTCCCAC CCCCAACTTTTTGGAGAAGAGGGCACAGGCCAAGAGGTTGAGGGAACAGACAGCTCCAGT GGGACTGGACAGAATTTCCATCTGGAAACTGAGCAATGGAGGGTTAGTTTCAATTTGGAA GTACCTCCCATAGACAGCAGGAACTCAGGGTTTCACAGACCTTAGCTGTGCTCTGAACTG TTTTTGATTATAATACAGGCTCATTGGAAGACATTA |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 1-237, - strand, RNAz p=0.998511 | |
| 10-166, - strand, RNAz p=0.986308 | |
| 312-431, - strand, RNAz p=0.767744 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-237, - strand, RNAz p=0.998511 | |
| 10-166, - strand, RNAz p=0.986308 | |
| 312-431, - strand, RNAz p=0.767744 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 1-431, gnl|bosTau2|chr10 (28743928-28744360) | |
| 1-431, gnl|canFam2|chr8 (29784543-29785402) | |
| 1-431, gnl|dasNov1|scaffold_40816 (933-69) | |
| 1-431, gnl|echTel1|scaffold_288392 (42533-41707) | |
| 1-431, gnl|hg17|chr14 (49872334-49873192) | |
| 1-431, gnl|Hg17|chr14 (49872561-49872969) | |
| 1-431, gnl|loxAfr1|scaffold_48539 (3732-2922) | |
| 1-431, gnl|mm7|chr12 (67692747-67693386) | |
| 1-431, gnl|Mm7|chr12 (67692837-67693205) | |
| 1-431, gnl|panTro1|chr15 (49286266-49287125) | |
| 1-431, gnl|rheMac2|chr7 (113398916-113399783) | |
| 1-431, gnl|rn3|chr6 (91810166-91810811) | |
| 445-633, gnl|bosTau2|chr10 (28744425-28744616) | |
| 445-633, gnl|canFam2|chr8 (29784543-29785402) | |
| 445-633, gnl|dasNov1|scaffold_40816 (933-69) | |
| 445-633, gnl|echTel1|scaffold_288392 (42533-41707) | |
| 445-633, gnl|hg17|chr14 (49872334-49873192) | |
| 445-633, gnl|Hg17|chr14 (49873027-49873224) | |
| 445-633, gnl|loxAfr1|scaffold_48539 (3732-2922) | |
| 445-633, gnl|mm7|chr12 (67692747-67693386) | |
| 445-633, gnl|panTro1|chr15 (49286266-49287125) | |
| 445-633, gnl|rheMac2|chr7 (113398916-113399783) | |
| 445-633, gnl|rn3|chr6 (91810166-91810811) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-431, gnl|bosTau2|chr10 (28743928-28744360) | |
| 1-431, gnl|canFam2|chr8 (29784543-29785402) | |
| 1-431, gnl|dasNov1|scaffold_40816 (933-69) | |
| 1-431, gnl|echTel1|scaffold_288392 (42533-41707) | |
| 1-431, gnl|hg17|chr14 (49872334-49873192) | |
| 1-431, gnl|Hg17|chr14 (49872561-49872969) | |
| 1-431, gnl|loxAfr1|scaffold_48539 (3732-2922) | |
| 1-431, gnl|mm7|chr12 (67692747-67693386) | |
| 1-431, gnl|Mm7|chr12 (67692837-67693205) | |
| 1-431, gnl|panTro1|chr15 (49286266-49287125) | |
| 1-431, gnl|rheMac2|chr7 (113398916-113399783) | |
| 1-431, gnl|rn3|chr6 (91810166-91810811) | |
| 445-633, gnl|bosTau2|chr10 (28744425-28744616) | |
| 445-633, gnl|canFam2|chr8 (29784543-29785402) | |
| 445-633, gnl|dasNov1|scaffold_40816 (933-69) | |
| 445-633, gnl|echTel1|scaffold_288392 (42533-41707) | |
| 445-633, gnl|hg17|chr14 (49872334-49873192) | |
| 445-633, gnl|Hg17|chr14 (49873027-49873224) | |
| 445-633, gnl|loxAfr1|scaffold_48539 (3732-2922) | |
| 445-633, gnl|mm7|chr12 (67692747-67693386) | |
| 445-633, gnl|panTro1|chr15 (49286266-49287125) | |
| 445-633, gnl|rheMac2|chr7 (113398916-113399783) | |
| 445-633, gnl|rn3|chr6 (91810166-91810811) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (0.165235) |