Ss1.1-Mixn-0030p07.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCACAGACAGTGTTTATTGAGTGGCAGGTGCAGGAGAGGTAGCTGGCTCCGGTGTAGAAG CCGAAGTGGCAGGTCATGCCAGGGTGCTGTGGGCATCTGGCAGCCAGGGCCATACCCTCC ATCCTAGGGGACAGCACAAGCTCACTACGACAGGAGTAGCAAGGAGCCGGCCTGGGGAAG AGGCAGCCACAGCCCCTGGAATCCTGGGCAAGAAGCGGCGGATGAACTCTGCACAGGGGC CTGGAGGGGGAGGGACTGGGGTCTGGGTGTTGTTGGGAGAGGGAGGGGGATCACGTCTGT GGGGTGGAGTAGAGACTGTGGTGGTGGCTGCCTGGTCCCAGAACCTGGGAGAAGAGCAGA GGAGTGGTCCGCGTCTGGCTGCCCCCGCACCAGCCTGGCTCCCGCCCGATGGCACCGTAC CAGCTGCCGGAGCCTAGGCTGCCTGACATGCTGGTGCTCTCGCCCCGGCTGTGCTCCCAA GAGCAGCCCTCGTCCTCGCAGTGTGCCCGGTCGAAGAAGTAGGAACGGGAGCCAAAGACC TGCCCGTTGAGGATGCGGCTGGTGCTCAGGTCCTGTGGGGGCCGGTGCACCCGGAAGAAG CCCACCAGCAGGGTGGTGGGCAGCAGCTCCCACACGAAGAGGATGAGGCCAAACACCAGG TAGCCTTTGTTCCCCAGGTCGTTCACCAGGTCCGCCTGGTCAGAGACGTTGTACCAGTCG TAATCGAAGGCGTCCAGCCGGCTCCGGGGGGCCAAGGCCAGGGCTGCCAGGTTGTAGCAG GCCCGGCTGGCATAGAGCAGGACCATGGCGCCACCCATCGCAGCTGCCTGACACACACTG GTCCCCTTGGCCTCCAGGTAGATGCTGGTGGAGGGGGCCCGCCGGGCCACAAGGCAGAGG CAAGCGGCGAGAGAGAGCGCGCAGATAACAAACAGGGAGTCGCTCACCAGGACACGCACC AGCAGGAGGGCCCAGGGCTGCGCCCGGCGCCGGCGGGACAGCACCGCACACAGCACATTC ACCAGCAGAAAGAGCAGCGAGGCCCCCACGAAGGCCCCTCGGACGGCCAGCAAGCCTCGG CTCATCTCTGGCCGACGCTTCGCCTTGGCCTTGAACACCACCTGGGCAAAGTAGAGATTC ATAAGCGTCAGTGTGAAGAACTGCAGGCAGACAGGGCAGCAGTAGAGAAGCCAAAAGGGC AGGGGCCCCAGGCGGTTGGCTCGAGGTGTATCTCGGAAGTAGAAGGAGAAGAGGGTGGTA CGCAGGGCGGCCCATAGCAGACAGAGTGCCAGGAACACCGTCTGATAGCTGAGACGCTTG TGCCCGTACAGGAGCACCAGCCAGAGCTGGGCATAGACGGAGAAGAAGAGCAAGGCATAC AGAGTGGTATAGGCCGCAGTCAGCCCCAGGGTCACGGCAGGCGGCAGCGCAGGCACCAGC CCAGCAGCAGGCACCAGGCCAGACAGGTTACTCTCCATGTCAGGGAGGGAGGCCTGAATC CAGGAGACAGAGATGGAGGGGCTGGCAGGGGGCCAGGTCCCCCCTCAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCACAGACAGTGTTTATTGAGTGGCAGGTGCAGGAGAGGTAGCTGGCTCCGGTGTAGAAG CCGAAGTGGCAGGTCATGCCAGGGTGCTGTGGGCATCTGGCAGCCAGGGCCATACCCTCC ATCCTAGGGGACAGCACAAGCTCACTACGACAGGAGTAGCAAGGAGCCGGCCTGGGGAAG AGGCAGCCACAGCCCCTGGAATCCTGGGCAAGAAGCGGCGGATGAACTCTGCACAGGGGC CTGGAGGGGGAGGGACTGGGGTCTGGGTGTTGTTGGGAGAGGGAGGGGGATCACGTCTGT GGGGTGGAGTAGAGACTGTGGTGGTGGCTGCCTGGTCCCAGAACCTGGGAGAAGAGCAGA GGAGTGGTCCGCGTCTGGCTGCCCCCGCACCAGCCTGGCTCCCGCCCGATGGCACCGTAC CAGCTGCCGGAGCCTAGGCTGCCTGACATGCTGGTGCTCTCGCCCCGGCTGTGCTCCCAA GAGCAGCCCTCGTCCTCGCAGTGTGCCCGGTCGAAGAAGTAGGAACGGGAGCCAAAGACC TGCCCGTTGAGGATGCGGCTGGTGCTCAGGTCCTGTGGGGGCCGGTGCACCCGGAAGAAG CCCACCAGCAGGGTGGTGGGCAGCAGCTCCCACACGAAGAGGATGAGGCCAAACACCAGG TAGCCTTTGTTCCCCAGGTCGTTCACCAGGTCCGCCTGGTCAGAGACGTTGTACCAGTCG TAATCGAAGGCGTCCAGCCGGCTCCGGGGGGCCAAGGCCAGGGCTGCCAGGTTGTAGCAG GCCCGGCTGGCATAGAGCAGGACCATGGCGCCACCCATCGCAGCTGCCTGACACACACTG GTCCCCTTGGCCTCCAGGTAGATGCTGGTGGAGGGGGCCCGCCGGGCCACAAGGCAGAGG CAAGCGGCGAGAGAGAGCGCGCAGATAACAAACAGGGAGTCGCTCACCAGGACACGCACC AGCAGGAGGGCCCAGGGCTGCGCCCGGCGCCGGCGGGACAGCACCGCACACAGCACATTC ACCAGCAGAAAGAGCAGCGAGGCCCCCACGAAGGCCCCTCGGACGGCCAGCAAGCCTCGG CTCATCTCTGGCCGACGCTTCGCCTTGGCCTTGAACACCACCTGGGCAAAGTAGAGATTC ATAAGCGTCAGTGTGAAGAACTGCAGGCAGACAGGGCAGCAGTAGAGAAGCCAAAAGGGC AGGGGCCCCAGGCGGTTGGCTCGAGGTGTATCTCGGAAGTAGAAGGAGAAGAGGGTGGTA CGCAGGGCGGCCCATAGCAGACAGAGTGCCAGGAACACCGTCTGATAGCTGAGACGCTTG TGCCCGTACAGGAGCACCAGCCAGAGCTGGGCATAGACGGAGAAGAAGAGCAAGGCATAC AGAGTGGTATAGGCCGCAGTCAGCCCCAGGGTCACGGCAGGCGGCAGCGCAGGCACCAGC CCAGCAGCAGGCACCAGGCCAGACAGGTTACTCTCCATGTCAGGGAGGGAGGCCTGAATC CAGGAGACAGAGATGGAGGGGCTGGCAGGGGGCCAGGTCCCCCCTCAC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 1-453, gnl|bosTau2|chr29 (33403970-33403509) | |
| 1-453, gnl|Hg17|chr11 (63813536-63813082) | |
| 1-453, gnl|Mm7|chr19 (6757940-6758396) | |
| 567-698, gnl|bosTau2|chr29 (33402989-33402858) | |
| 567-698, gnl|canFam2|chr18 (55803980-55803836) | |
| 567-698, gnl|danRer3|chr14 (26047925-26048068) | |
| 567-698, gnl|dasNov1|scaffold_44557 (8940-9057) | |
| 567-698, gnl|echTel1|scaffold_302691 (1176-1327) | |
| 567-698, gnl|fr1|chrUn (318160744-318160589) | |
| 567-698, gnl|hg17|chr11 (63812377-63812540) | |
| 567-698, gnl|Hg17|chr11 (63812516-63812385) | |
| 567-698, gnl|loxAfr1|scaffold_98641 (8413-8250) | |
| 567-698, gnl|mm7|chr19 (6759017-6758852) | |
| 567-698, gnl|Mm7|chr19 (6758876-6759007) | |
| 567-698, gnl|monDom2|scaffold_491 (11919-11757) | |
| 567-698, gnl|oryCun1|scaffold_195207 (6857-7002) | |
| 567-698, gnl|panTro1|chr9 (64801240-64801403) | |
| 567-698, gnl|rheMac2|chr14 (10138822-10138659) | |
| 567-698, gnl|rn3|chr1 (209772687-209772527) | |
| 567-698, gnl|tetNig1|chr17 (1903782-1903628) | |
| 845-1071, gnl|bosTau2|chr29 (33402473-33402247) | |
| 845-1071, gnl|Hg17|chr11 (63811995-63811769) | |
| 845-1071, gnl|Mm7|chr19 (6759392-6759618) | |
| 1119-1433, gnl|bosTau2|chr28 (4299102-4298788) | |
| 1119-1433, gnl|canFam2|chr4 (6862157-6861899) | |
| 1119-1433, gnl|danRer3|chr11 (42737650-42737908) | |
| 1119-1433, gnl|dasNov1|scaffold_195518 (4666-4924) | |
| 1119-1433, gnl|fr1|chrUn (318162444-318162186) | |
| 1119-1433, gnl|galGal2|chr3 (34096796-34096538) | |
| 1119-1433, gnl|hg17|chr1 (232632048-232632306) | |
| 1119-1433, gnl|Hg17|chr1 (232632380-232632066) | |
| 1119-1433, gnl|loxAfr1|scaffold_50446 (4578-4332) | |
| 1119-1433, gnl|mm7|chr13 (12736186-12735928) | |
| 1119-1433, gnl|Mm7|chr13 (12735852-12736166) | |
| 1119-1433, gnl|monDom2|scaffold_13 (49301957-49301699) | |
| 1119-1433, gnl|oryCun1|scaffold_175262 (38014-38272) | |
| 1119-1433, gnl|panTro1|chr1 (216462981-216463239) | |
| 1119-1433, gnl|rheMac2|chr14 (10140588-10140342) | |
| 1119-1433, gnl|rn3|chr17 (66984622-66984880) | |
| 1119-1433, gnl|tetNig1|chr17 (1905205-1904947) | |
| 1119-1433, gnl|xenTro1|scaffold_371 (140309-140567) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-453, gnl|bosTau2|chr29 (33403970-33403509) | |
| 1-453, gnl|Hg17|chr11 (63813536-63813082) | |
| 1-453, gnl|Mm7|chr19 (6757940-6758396) | |
| 567-698, gnl|bosTau2|chr29 (33402989-33402858) | |
| 567-698, gnl|canFam2|chr18 (55803980-55803836) | |
| 567-698, gnl|danRer3|chr14 (26047925-26048068) | |
| 567-698, gnl|dasNov1|scaffold_44557 (8940-9057) | |
| 567-698, gnl|echTel1|scaffold_302691 (1176-1327) | |
| 567-698, gnl|fr1|chrUn (318160744-318160589) | |
| 567-698, gnl|hg17|chr11 (63812377-63812540) | |
| 567-698, gnl|Hg17|chr11 (63812516-63812385) | |
| 567-698, gnl|loxAfr1|scaffold_98641 (8413-8250) | |
| 567-698, gnl|mm7|chr19 (6759017-6758852) | |
| 567-698, gnl|Mm7|chr19 (6758876-6759007) | |
| 567-698, gnl|monDom2|scaffold_491 (11919-11757) | |
| 567-698, gnl|oryCun1|scaffold_195207 (6857-7002) | |
| 567-698, gnl|panTro1|chr9 (64801240-64801403) | |
| 567-698, gnl|rheMac2|chr14 (10138822-10138659) | |
| 567-698, gnl|rn3|chr1 (209772687-209772527) | |
| 567-698, gnl|tetNig1|chr17 (1903782-1903628) | |
| 845-1071, gnl|bosTau2|chr29 (33402473-33402247) | |
| 845-1071, gnl|Hg17|chr11 (63811995-63811769) | |
| 845-1071, gnl|Mm7|chr19 (6759392-6759618) | |
| 1119-1433, gnl|bosTau2|chr28 (4299102-4298788) | |
| 1119-1433, gnl|canFam2|chr4 (6862157-6861899) | |
| 1119-1433, gnl|danRer3|chr11 (42737650-42737908) | |
| 1119-1433, gnl|dasNov1|scaffold_195518 (4666-4924) | |
| 1119-1433, gnl|fr1|chrUn (318162444-318162186) | |
| 1119-1433, gnl|galGal2|chr3 (34096796-34096538) | |
| 1119-1433, gnl|hg17|chr1 (232632048-232632306) | |
| 1119-1433, gnl|Hg17|chr1 (232632380-232632066) | |
| 1119-1433, gnl|loxAfr1|scaffold_50446 (4578-4332) | |
| 1119-1433, gnl|mm7|chr13 (12736186-12735928) | |
| 1119-1433, gnl|Mm7|chr13 (12735852-12736166) | |
| 1119-1433, gnl|monDom2|scaffold_13 (49301957-49301699) | |
| 1119-1433, gnl|oryCun1|scaffold_175262 (38014-38272) | |
| 1119-1433, gnl|panTro1|chr1 (216462981-216463239) | |
| 1119-1433, gnl|rheMac2|chr14 (10140588-10140342) | |
| 1119-1433, gnl|rn3|chr17 (66984622-66984880) | |
| 1119-1433, gnl|tetNig1|chr17 (1905205-1904947) | |
| 1119-1433, gnl|xenTro1|scaffold_371 (140309-140567) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| jej (0.296765) | |
| hyp (0.285673) | |
| ece (0.229305) | |
| col (0.195008) | |
| eye (0.170503) | |
| nco (0.161734) | |
| nmm (0.132802) | |
| ebs (0.118301) | |
| med (0.116252) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jej (0.296765) | |
| hyp (0.285673) | |
| ece (0.229305) | |
| col (0.195008) | |
| eye (0.170503) | |
| nco (0.161734) | |
| nmm (0.132802) | |
| ebs (0.118301) | |
| med (0.116252) |