Ss1.1-Mixn-0031a05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAGGGGAGGCTCCGTGAGTGCCACACAGTGGGGAGGGGGTGGGGGCCATCATGTCATCG TATCTGAAGGAACTGGAGAAATACAGAGACATAGATGAAGATGAGATCCTAAGGACCTTG AGCCCTGAGGAGCTAGAGCAGCTGGACTGCGAGCTACAGGAGATGGACCCCGAGAACATG CTCCTGCCAGCTGGACTAAGACAACGTGACCAGACGAAGAAGAGCCCAACGGGGCCGCTG GACCGAGAGGCCCTTTTGCAGTACCTGGAACAGCAGGCACTAGAGGTCAAAGAGCGTGAT GACTTGGTACCCTTCACAGGCGAGAAGAAGGGGAAACCCTATATTCAGCCCAAGAGGGAA ATTCCAAAAGAGGAGCAGATCACTCTGGAGCCTGAGCTCGAGGAGGCGCTGGCCCATGCC ACGGATGCGGAAATGTGTGATATTGCAGCAATTCTGGGCATGTACACACTAATGAGCAAC AAGCAGTACTACGATGCTCTCTGCAGTGGAGAAATCTGCAACACCGAAGGCATCAGCAGT GTGGTGCAGCCTGATAAGTATAAGCCGGTGCCAGATGAGCCCCCAAATCCCACAAACATC GAGGAGATACTGAAGAGTGTTCGAAGCAATGACAAGGAGTTGGAGGAGGTGAACCTCAAT AATATCCAGGACATCCCGATACCCATGCTAACTGAACTGTGTGAGGCAATGAAGACGAAT ACCCATGTCCGGAGCTTCAGTCTGGTGGCCACAAGGAGCGGTGACCCCATTGCCCATGCG GTGGCTGACATGTTGCGAGAGAATCGTAGCCTCCAGAGTCTGAACATTGAATCCAACTTC ATCAGCAGCACAGGGCTCATGGCTGTGCTGAAGGCAGTTCGGGAGAATGCCACACTCACT GAGCTCCGCGTAGACAACCAGCGCCAGTGGCCTGGAGATGCAGTGGAGATGGAAATGGCC ACTGTGCTCGAACAGTGTCCCTCCATTGTCCGCTTTGGCTACCACTTTACACAGCAGGGG CCACGAGCTCGGGCGGCCCAGGCCATGACACGGAACAATGAATTACGTCGCCAGCAAAAG AAGAGATAACAGTACCCTCCCTTTATCAACTGGAGCCCGGAGCCCTGAATGCTTAAATTA AATCCTCATCTATCCCCCTTTCCTGTAAATAAAGGCCCTCTGTCCACTCAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAGGGGAGGCTCCGTGAGTGCCACACAGTGGGGAGGGGGTGGGGGCCATCATGTCATCG TATCTGAAGGAACTGGAGAAATACAGAGACATAGATGAAGATGAGATCCTAAGGACCTTG AGCCCTGAGGAGCTAGAGCAGCTGGACTGCGAGCTACAGGAGATGGACCCCGAGAACATG CTCCTGCCAGCTGGACTAAGACAACGTGACCAGACGAAGAAGAGCCCAACGGGGCCGCTG GACCGAGAGGCCCTTTTGCAGTACCTGGAACAGCAGGCACTAGAGGTCAAAGAGCGTGAT GACTTGGTACCCTTCACAGGCGAGAAGAAGGGGAAACCCTATATTCAGCCCAAGAGGGAA ATTCCAAAAGAGGAGCAGATCACTCTGGAGCCTGAGCTCGAGGAGGCGCTGGCCCATGCC ACGGATGCGGAAATGTGTGATATTGCAGCAATTCTGGGCATGTACACACTAATGAGCAAC AAGCAGTACTACGATGCTCTCTGCAGTGGAGAAATCTGCAACACCGAAGGCATCAGCAGT GTGGTGCAGCCTGATAAGTATAAGCCGGTGCCAGATGAGCCCCCAAATCCCACAAACATC GAGGAGATACTGAAGAGTGTTCGAAGCAATGACAAGGAGTTGGAGGAGGTGAACCTCAAT AATATCCAGGACATCCCGATACCCATGCTAACTGAACTGTGTGAGGCAATGAAGACGAAT ACCCATGTCCGGAGCTTCAGTCTGGTGGCCACAAGGAGCGGTGACCCCATTGCCCATGCG GTGGCTGACATGTTGCGAGAGAATCGTAGCCTCCAGAGTCTGAACATTGAATCCAACTTC ATCAGCAGCACAGGGCTCATGGCTGTGCTGAAGGCAGTTCGGGAGAATGCCACACTCACT GAGCTCCGCGTAGACAACCAGCGCCAGTGGCCTGGAGATGCAGTGGAGATGGAAATGGCC ACTGTGCTCGAACAGTGTCCCTCCATTGTCCGCTTTGGCTACCACTTTACACAGCAGGGG CCACGAGCTCGGGCGGCCCAGGCCATGACACGGAACAATGAATTACGTCGCCAGCAAAAG AAGAGATAACAGTACCCTCCCTTTATCAACTGGAGCCCGGAGCCCTGAATGCTTAAATTA AATCCTCATCTATCCCCCTTTCCTGTAAATAAAGGCCCTCTGTCCACTCAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 215-332, - strand, RNAz p=0.56397 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 215-332, - strand, RNAz p=0.56397 |
| Aligned organism(s): 49 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
| 168-332, gnl|bosTau2|chr3 (16396357-16396521) | |
| 168-332, gnl|canFam2|chr17 (63316155-63316289) | |
| 168-332, gnl|danRer3|chrNA (175256270-175256404) | |
| 168-332, gnl|dasNov1|scaffold_13873 (2839-2705) | |
| 168-332, gnl|echTel1|scaffold_260557 (3339-3205) | |
| 168-332, gnl|fr1|chrUn (255856996-255856863) | |
| 168-332, gnl|hg17|chr1 (147959938-147960072) | |
| 168-332, gnl|Hg17|chr1 (147960103-147959939) | |
| 168-332, gnl|loxAfr1|scaffold_67200 (7819-7953) | |
| 168-332, gnl|mm7|chr3 (94999929-94999795) | |
| 168-332, gnl|Mm7|chr3 (94999762-94999926) | |
| 168-332, gnl|monDom2|scaffold_44 (4381948-4382082) | |
| 168-332, gnl|oryCun1|scaffold_101621 (849-715) | |
| 168-332, gnl|rheMac2|chr1 (129599450-129599584) | |
| 168-332, gnl|rn3|chr2 (189992574-189992440) | |
| 168-332, gnl|tetNig1|chrUn_random (41033745-41033879) | |
| 168-332, gnl|xenTro1|scaffold_96 (1441952-1441829) | |
| 585-961, gnl|bosTau2|chr22 (23449909-23450285) | |
| 585-961, gnl|canFam2|chr20 (25617370-25616847) | |
| 585-961, gnl|danRer3|chr23 (14110559-14111082) | |
| 585-961, gnl|dasNov1|scaffold_12794 (38528-39051) | |
| 585-961, gnl|echTel1|scaffold_319905 (84477-83954) | |
| 585-961, gnl|fr1|chrUn (39252935-39253458) | |
| 585-961, gnl|galGal2|chrUn (128200406-128200929) | |
| 585-961, gnl|hg17|chr3 (69250974-69251497) | |
| 585-961, gnl|Hg17|chr3 (69251488-69251112) | |
| 585-961, gnl|loxAfr1|scaffold_10697 (39018-39547) | |
| 585-961, gnl|mm7|chr6 (97335685-97336208) | |
| 585-961, gnl|Mm7|chr6 (97336199-97335823) | |
| 585-961, gnl|monDom2|scaffold_5 (16452819-16453342) | |
| 585-961, gnl|oryCun1|scaffold_190989 (23809-23287) | |
| 585-961, gnl|panTro1|chr2 (71038154-71038677) | |
| 585-961, gnl|rheMac2|chr2 (67034433-67033910) | |
| 585-961, gnl|rn3|chr4 (132213304-132213826) | |
| 585-961, gnl|tetNig1|chr9 (8164535-8164012) | |
| 585-961, gnl|xenTro1|scaffold_740 (434573-435096) | |
| 1067-1189, gnl|bosTau2|chr3 (16399340-16399457) | |
| 1067-1189, gnl|canFam2|chr17 (63312939-63313201) | |
| 1067-1189, gnl|dasNov1|scaffold_13873 (5813-5539) | |
| 1067-1189, gnl|echTel1|scaffold_260557 (6407-6152) | |
| 1067-1189, gnl|hg17|chr1 (147955525-147955799) | |
| 1067-1189, gnl|Hg17|chr1 (147955652-147955533) | |
| 1067-1189, gnl|mm7|chr3 (95003167-95002907) | |
| 1067-1189, gnl|Mm7|chr3 (95003037-95003157) | |
| 1067-1189, gnl|monDom2|scaffold_44 (4378614-4378900) | |
| 1067-1189, gnl|oryCun1|scaffold_101621 (3849-3576) | |
| 1067-1189, gnl|panTro1|chr1 (129691916-129692190) | |
| 1067-1189, gnl|rheMac2|chr1 (129595860-129596134) | |
| 1067-1189, gnl|rn3|chr2 (189995841-189995491) |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 168-332, gnl|bosTau2|chr3 (16396357-16396521) | |
| 168-332, gnl|canFam2|chr17 (63316155-63316289) | |
| 168-332, gnl|danRer3|chrNA (175256270-175256404) | |
| 168-332, gnl|dasNov1|scaffold_13873 (2839-2705) | |
| 168-332, gnl|echTel1|scaffold_260557 (3339-3205) | |
| 168-332, gnl|fr1|chrUn (255856996-255856863) | |
| 168-332, gnl|hg17|chr1 (147959938-147960072) | |
| 168-332, gnl|Hg17|chr1 (147960103-147959939) | |
| 168-332, gnl|loxAfr1|scaffold_67200 (7819-7953) | |
| 168-332, gnl|mm7|chr3 (94999929-94999795) | |
| 168-332, gnl|Mm7|chr3 (94999762-94999926) | |
| 168-332, gnl|monDom2|scaffold_44 (4381948-4382082) | |
| 168-332, gnl|oryCun1|scaffold_101621 (849-715) | |
| 168-332, gnl|rheMac2|chr1 (129599450-129599584) | |
| 168-332, gnl|rn3|chr2 (189992574-189992440) | |
| 168-332, gnl|tetNig1|chrUn_random (41033745-41033879) | |
| 168-332, gnl|xenTro1|scaffold_96 (1441952-1441829) | |
| 585-961, gnl|bosTau2|chr22 (23449909-23450285) | |
| 585-961, gnl|canFam2|chr20 (25617370-25616847) | |
| 585-961, gnl|danRer3|chr23 (14110559-14111082) | |
| 585-961, gnl|dasNov1|scaffold_12794 (38528-39051) | |
| 585-961, gnl|echTel1|scaffold_319905 (84477-83954) | |
| 585-961, gnl|fr1|chrUn (39252935-39253458) | |
| 585-961, gnl|galGal2|chrUn (128200406-128200929) | |
| 585-961, gnl|hg17|chr3 (69250974-69251497) | |
| 585-961, gnl|Hg17|chr3 (69251488-69251112) | |
| 585-961, gnl|loxAfr1|scaffold_10697 (39018-39547) | |
| 585-961, gnl|mm7|chr6 (97335685-97336208) | |
| 585-961, gnl|Mm7|chr6 (97336199-97335823) | |
| 585-961, gnl|monDom2|scaffold_5 (16452819-16453342) | |
| 585-961, gnl|oryCun1|scaffold_190989 (23809-23287) | |
| 585-961, gnl|panTro1|chr2 (71038154-71038677) | |
| 585-961, gnl|rheMac2|chr2 (67034433-67033910) | |
| 585-961, gnl|rn3|chr4 (132213304-132213826) | |
| 585-961, gnl|tetNig1|chr9 (8164535-8164012) | |
| 585-961, gnl|xenTro1|scaffold_740 (434573-435096) | |
| 1067-1189, gnl|bosTau2|chr3 (16399340-16399457) | |
| 1067-1189, gnl|canFam2|chr17 (63312939-63313201) | |
| 1067-1189, gnl|dasNov1|scaffold_13873 (5813-5539) | |
| 1067-1189, gnl|echTel1|scaffold_260557 (6407-6152) | |
| 1067-1189, gnl|hg17|chr1 (147955525-147955799) | |
| 1067-1189, gnl|Hg17|chr1 (147955652-147955533) | |
| 1067-1189, gnl|mm7|chr3 (95003167-95002907) | |
| 1067-1189, gnl|Mm7|chr3 (95003037-95003157) | |
| 1067-1189, gnl|monDom2|scaffold_44 (4378614-4378900) | |
| 1067-1189, gnl|oryCun1|scaffold_101621 (3849-3576) | |
| 1067-1189, gnl|panTro1|chr1 (129691916-129692190) | |
| 1067-1189, gnl|rheMac2|chr1 (129595860-129596134) | |
| 1067-1189, gnl|rn3|chr2 (189995841-189995491) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| mas (1.26183) | |
| nms (0.641574) | |
| tbr (0.616713) | |
| ssp (0.542079) | |
| ste (0.405625) | |
| sme (0.305437) | |
| bfe (0.149858) | |
| ebs (0.118301) | |
| ldo (0.0970026) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (1.26183) | |
| nms (0.641574) | |
| tbr (0.616713) | |
| ssp (0.542079) | |
| ste (0.405625) | |
| sme (0.305437) | |
| bfe (0.149858) | |
| ebs (0.118301) | |
| ldo (0.0970026) |