Ss1.1-Mixn-0031a10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGGACCTCACCTTCCAGCCCTCACAGCCCCTGAGCAAGTCCAGCTCATCGCCTGAACTG CAGACCCTGCAGGATGTCCTTGGGGACCTTGGGGACAAGGCCGATGCCGGCCGACTGAGC CCTGAGGCCAAGGCCCGGTCGCAGTCAGGGATCCTGGATGGGGAAGGCGCTGCCTGGCCA GCTCCGGGCGAAGAGGGCCGGGGCCGGGGTCCTTCCCAGACCGAGGGCCCCTTACCTTCC AGCTGCCCCCGCTCCCCCAGTGGCCTGCGGCCTCGAGGCTACACCATCTCTGATTCGGCC CCGTCGCGCAGGGGCAAGCGGGTGGAGAGGGATGCCTTCAAGGGCAGAGCCAGGACCCCC AACACGGAGAAGGTGCCGGGCATCAACCCCAGCTTCGTGTTCCTGCAGCTCTACCACTCC CCTTTCTTCGGTGACGAGTCCAACAAGCCCATCCTTCTGCCCAGCGAGTCTTTTGAGCGG TCGGTGCAGCTCCTCGACCAGATCCCGTCATATGACACGCACAAGATCGCCGTCCTGTAC GTGGGAGAAGGCCAGAGCAACAGTGAGCTTGCCATCCTGTCCAACGAGCACGGCTCCTAC AGGTACACGGAGTTCCTGACGGGGCTGGGCAAGCTCATCGAGCTCAAGGACTGCCAGCCG GACAAGGTGTACCTGGGTGGCTTGGACGTGTGTGGCGAGGACGGCCAGTTCACCTACTGC TGGCACGACGACATCATGCAAGCCGTCTTCCACATCGCCACCCTGATGCCCACCAAGGAC GTGGACAAGCACCGCTGTGACAAGAAGCGCCACCTGGGCAATGATTTCGTGTCCATCGTC TACAACGACTCGGGCGAGGACTTCAAGCTGGGCACCATCAAAGGCCAGTTCAACTTTGTC CACGTGATCATCACGCCCCTGGACTACGAGTGCAACCTGGTGTCGCTGCAGTGCAGGAAA GACATGGAGGGCCTCGTGGACACCAGTGTGGCCAAGATTGTGTCTGACCGAAACCTGCCC TTCGTGGCCCGCCAGATGGCCCTGCATGCGAACATGGCCTCGCAGGTGCACCATAGCCGA TCCAACCCCACGGACATCTACCCCTCCAAGTGGATCGCCAGGCTCCGCCACATCAAGCGG CTGCGCCAACGGATCCGAGAGGAGGCCCACTACTCGAACGCCAGCCTGCCCCAGATGCAG ACGCACCCTCCCGGCCACGCCAAGGCCCCGGCGCAGGCCCCAGCGGAGCCCACGCCCACC TACGAGACGGGCCAGCGCAAGCGTCTCATCTCCTCCGTGGACGACTTCACCGAGTTTGTG TGAGGCTGCGCGCGGGCCGCTGCCTGGTCCCCTTGGAGCCTGTCGGAGACGCTGAGCACA CGCCCCGGCAGCAGCCCTCCCTGCCCGCAAGGAGCTGGGGTGGTTTTCATTTGCGTGAAT AAAGGGCTGGTGGGGCCCCAGCCGGCACACACGACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGGACCTCACCTTCCAGCCCTCACAGCCCCTGAGCAAGTCCAGCTCATCGCCTGAACTG CAGACCCTGCAGGATGTCCTTGGGGACCTTGGGGACAAGGCCGATGCCGGCCGACTGAGC CCTGAGGCCAAGGCCCGGTCGCAGTCAGGGATCCTGGATGGGGAAGGCGCTGCCTGGCCA GCTCCGGGCGAAGAGGGCCGGGGCCGGGGTCCTTCCCAGACCGAGGGCCCCTTACCTTCC AGCTGCCCCCGCTCCCCCAGTGGCCTGCGGCCTCGAGGCTACACCATCTCTGATTCGGCC CCGTCGCGCAGGGGCAAGCGGGTGGAGAGGGATGCCTTCAAGGGCAGAGCCAGGACCCCC AACACGGAGAAGGTGCCGGGCATCAACCCCAGCTTCGTGTTCCTGCAGCTCTACCACTCC CCTTTCTTCGGTGACGAGTCCAACAAGCCCATCCTTCTGCCCAGCGAGTCTTTTGAGCGG TCGGTGCAGCTCCTCGACCAGATCCCGTCATATGACACGCACAAGATCGCCGTCCTGTAC GTGGGAGAAGGCCAGAGCAACAGTGAGCTTGCCATCCTGTCCAACGAGCACGGCTCCTAC AGGTACACGGAGTTCCTGACGGGGCTGGGCAAGCTCATCGAGCTCAAGGACTGCCAGCCG GACAAGGTGTACCTGGGTGGCTTGGACGTGTGTGGCGAGGACGGCCAGTTCACCTACTGC TGGCACGACGACATCATGCAAGCCGTCTTCCACATCGCCACCCTGATGCCCACCAAGGAC GTGGACAAGCACCGCTGTGACAAGAAGCGCCACCTGGGCAATGATTTCGTGTCCATCGTC TACAACGACTCGGGCGAGGACTTCAAGCTGGGCACCATCAAAGGCCAGTTCAACTTTGTC CACGTGATCATCACGCCCCTGGACTACGAGTGCAACCTGGTGTCGCTGCAGTGCAGGAAA GACATGGAGGGCCTCGTGGACACCAGTGTGGCCAAGATTGTGTCTGACCGAAACCTGCCC TTCGTGGCCCGCCAGATGGCCCTGCATGCGAACATGGCCTCGCAGGTGCACCATAGCCGA TCCAACCCCACGGACATCTACCCCTCCAAGTGGATCGCCAGGCTCCGCCACATCAAGCGG CTGCGCCAACGGATCCGAGAGGAGGCCCACTACTCGAACGCCAGCCTGCCCCAGATGCAG ACGCACCCTCCCGGCCACGCCAAGGCCCCGGCGCAGGCCCCAGCGGAGCCCACGCCCACC TACGAGACGGGCCAGCGCAAGCGTCTCATCTCCTCCGTGGACGACTTCACCGAGTTTGTG TGAGGCTGCGCGCGGGCCGCTGCCTGGTCCCCTTGGAGCCTGTCGGAGACGCTGAGCACA CGCCCCGGCAGCAGCCCTCCCTGCCCGCAAGGAGCTGGGGTGGTTTTCATTTGCGTGAAT AAAGGGCTGGTGGGGCCCCAGCCGGCACACACGACA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 40-159, + strand, RNAz p=0.704271 | |
| 553-1342, - strand, RNAz p=0.640059 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 40-159, + strand, RNAz p=0.704271 | |
| 553-1342, - strand, RNAz p=0.640059 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BX647816, + |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-392, gnl|bosTau2|chr25 (2804338-2804729) | |
| 1-392, gnl|Hg17|chr16 (2074338-2074717) | |
| 1-392, gnl|Mm7|chr17 (22780767-22780382) | |
| 553-742, gnl|bosTau2|chr25 (2805975-2806164) | |
| 553-742, gnl|canFam2|chr6 (41909395-41909218) | |
| 553-742, gnl|danRer3|chrNA (62888856-62888697) | |
| 553-742, gnl|dasNov1|scaffold_170855 (444-615) | |
| 553-742, gnl|fr1|chrUn (217925743-217925562) | |
| 553-742, gnl|galGal2|chr14 (8334799-8334974) | |
| 553-742, gnl|hg17|chr16 (2076172-2076352) | |
| 553-742, gnl|Hg17|chr16 (2076192-2076381) | |
| 553-742, gnl|loxAfr1|scaffold_23244 (53931-54112) | |
| 553-742, gnl|mm7|chr17 (22779224-22779040) | |
| 553-742, gnl|Mm7|chr17 (22779198-22779009) | |
| 553-742, gnl|monDom2|scaffold_5 (121175479-121175302) | |
| 553-742, gnl|oryCun1|scaffold_192423 (12187-12379) | |
| 553-742, gnl|panTro1|chr18_random (6532199-6532026) | |
| 553-742, gnl|rheMac2|chr20 (2077575-2077755) | |
| 553-742, gnl|rn3|chr10 (13850215-13850031) | |
| 553-742, gnl|tetNig1|chr18 (2016818-2016646) | |
| 553-742, gnl|xenTro1|scaffold_12 (1086852-1087012) | |
| 1144-1367, gnl|bosTau2|chr25 (2807030-2807251) | |
| 1144-1367, gnl|Hg17|chr16 (2078439-2078617) | |
| 1144-1367, gnl|Mm7|chr17 (22777600-22777413) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-392, gnl|bosTau2|chr25 (2804338-2804729) | |
| 1-392, gnl|Hg17|chr16 (2074338-2074717) | |
| 1-392, gnl|Mm7|chr17 (22780767-22780382) | |
| 553-742, gnl|bosTau2|chr25 (2805975-2806164) | |
| 553-742, gnl|canFam2|chr6 (41909395-41909218) | |
| 553-742, gnl|danRer3|chrNA (62888856-62888697) | |
| 553-742, gnl|dasNov1|scaffold_170855 (444-615) | |
| 553-742, gnl|fr1|chrUn (217925743-217925562) | |
| 553-742, gnl|galGal2|chr14 (8334799-8334974) | |
| 553-742, gnl|hg17|chr16 (2076172-2076352) | |
| 553-742, gnl|Hg17|chr16 (2076192-2076381) | |
| 553-742, gnl|loxAfr1|scaffold_23244 (53931-54112) | |
| 553-742, gnl|mm7|chr17 (22779224-22779040) | |
| 553-742, gnl|Mm7|chr17 (22779198-22779009) | |
| 553-742, gnl|monDom2|scaffold_5 (121175479-121175302) | |
| 553-742, gnl|oryCun1|scaffold_192423 (12187-12379) | |
| 553-742, gnl|panTro1|chr18_random (6532199-6532026) | |
| 553-742, gnl|rheMac2|chr20 (2077575-2077755) | |
| 553-742, gnl|rn3|chr10 (13850215-13850031) | |
| 553-742, gnl|tetNig1|chr18 (2016818-2016646) | |
| 553-742, gnl|xenTro1|scaffold_12 (1086852-1087012) | |
| 1144-1367, gnl|bosTau2|chr25 (2807030-2807251) | |
| 1144-1367, gnl|Hg17|chr16 (2078439-2078617) | |
| 1144-1367, gnl|Mm7|chr17 (22777600-22777413) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| ebs (0.236602) | |
| fcc (0.197785) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| jej (0.0989218) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.236602) | |
| fcc (0.197785) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| jej (0.0989218) |