Ss1.1-Mixn-0031a20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGAGTCCCAGGACAGCTTGAAACGCTGTCTCAGAAGGATCTGGAGCCAGGGCAGCTGAG TCACCAGCGTGCTTTGGACAACCGCTGCGATGGTGCGTGAACAGTACACCACAGCCACGG AGGGCACCCAGGTGGAGAGGCCAGAGAACCAGGCCGTCTACAAAATCGGCATTTATGGCT GGAGAAAGCGCTGCCTCTACTTATTCGTTCTTCTTTTGCTCATCCTTCTCCTTGTGAACT TGGCTCTTACCATTTGGATTCTTCGAGTGATGTGGTTTTCCCCAGCAGGGATGGGCCACT TGCAAGTGAAACAAGAGGGACTTCGCCTGGAAGGGGACTCAGAGTTTTTATTCCCATTGT ACGCCAAAGAAATACGCTCCAGAGTGGATTCGCCTCTGCTTCTGCAGTCCCCGCAGAACG TGACTCTCAGTGCCCGCACGGTGGAAGGAGAGGTCACGGGCAGGCTGACGGCGGGTCCCC AAATGGTAGAGATCCAGAGTCAGCACTTTCACATCAACTCCAGGGATGGCAGGCCGCTGT TTACCGTTGATGAAAGGGAAGCTGTGGTCGGTGCAGACAAGCTTCGAGTGACTGGGCCTG AAGGGGCTCTTTTTGAACATTCAGTGGAGACACCCCTCGTGAGACCTGACCCCTTCCAGG ACCTCAGACTGGAGTCCCCCACGCGGAGCCTCAGCATGGATGCCCCAAACGGCGTTCGCG TTCGCGCACCTGCGGGGAGCGGGGCGGCCCTTTCCCAGATGGACATCGTTCTTCACAGCA GCGCCGGGCCGCTCGTCCTTGATGCTGAGACCGTGTGTTTACCCAGGGTGGCCCAGGGGA CGCGGGGCCCCGGCAGCTCGCAGGGCCTCTACGAAGTCTGCGCGTGTGCAGATGGGAGGC TCTACCTGGCGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGAGTCCCAGGACAGCTTGAAACGCTGTCTCAGAAGGATCTGGAGCCAGGGCAGCTGAG TCACCAGCGTGCTTTGGACAACCGCTGCGATGGTGCGTGAACAGTACACCACAGCCACGG AGGGCACCCAGGTGGAGAGGCCAGAGAACCAGGCCGTCTACAAAATCGGCATTTATGGCT GGAGAAAGCGCTGCCTCTACTTATTCGTTCTTCTTTTGCTCATCCTTCTCCTTGTGAACT TGGCTCTTACCATTTGGATTCTTCGAGTGATGTGGTTTTCCCCAGCAGGGATGGGCCACT TGCAAGTGAAACAAGAGGGACTTCGCCTGGAAGGGGACTCAGAGTTTTTATTCCCATTGT ACGCCAAAGAAATACGCTCCAGAGTGGATTCGCCTCTGCTTCTGCAGTCCCCGCAGAACG TGACTCTCAGTGCCCGCACGGTGGAAGGAGAGGTCACGGGCAGGCTGACGGCGGGTCCCC AAATGGTAGAGATCCAGAGTCAGCACTTTCACATCAACTCCAGGGATGGCAGGCCGCTGT TTACCGTTGATGAAAGGGAAGCTGTGGTCGGTGCAGACAAGCTTCGAGTGACTGGGCCTG AAGGGGCTCTTTTTGAACATTCAGTGGAGACACCCCTCGTGAGACCTGACCCCTTCCAGG ACCTCAGACTGGAGTCCCCCACGCGGAGCCTCAGCATGGATGCCCCAAACGGCGTTCGCG TTCGCGCACCTGCGGGGAGCGGGGCGGCCCTTTCCCAGATGGACATCGTTCTTCACAGCA GCGCCGGGCCGCTCGTCCTTGATGCTGAGACCGTGTGTTTACCCAGGGTGGCCCAGGGGA CGCGGGGCCCCGGCAGCTCGCAGGGCCTCTACGAAGTCTGCGCGTGTGCAGATGGGAGGC TCTACCTGGCGG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 89-285, gnl|bosTau2|chr12 (19521075-19520879) | |
| 89-285, gnl|Hg17|chr13 (22675833-22676029) | |
| 89-285, gnl|Mm7|chr14 (56113624-56113428) | |
| 287-387, gnl|bosTau2|chr12 (19518210-19518110) | |
| 287-387, gnl|canFam2|chr25 (18328201-18327974) | |
| 287-387, gnl|dasNov1|scaffold_56509 (43780-43555) | |
| 287-387, gnl|echTel1|scaffold_278256 (19097-18860) | |
| 287-387, gnl|hg17|chr13 (22706675-22706906) | |
| 287-387, gnl|Hg17|chr13 (22706752-22706852) | |
| 287-387, gnl|loxAfr1|scaffold_109217 (1231-1472) | |
| 287-387, gnl|mm7|chr14 (56108184-56107970) | |
| 287-387, gnl|Mm7|chr14 (56108114-56108014) | |
| 287-387, gnl|monDom2|scaffold_15 (32044343-32044555) | |
| 287-387, gnl|oryCun1|scaffold_178103 (113908-114165) | |
| 287-387, gnl|panTro1|chr14 (21893007-21893237) | |
| 287-387, gnl|rheMac2|chr17 (3680689-3680922) | |
| 287-387, gnl|rn3|chr15 (40397895-40397692) | |
| 474-595, gnl|bosTau2|chr12 (19509572-19509451) | |
| 474-595, gnl|canFam2|chr25 (18313537-18313393) | |
| 474-595, gnl|dasNov1|scaffold_56509 (3697-3539) | |
| 474-595, gnl|echTel1|scaffold_265711 (625-751) | |
| 474-595, gnl|galGal2|chr1 (169675037-169674881) | |
| 474-595, gnl|hg17|chr13 (22751487-22751646) | |
| 474-595, gnl|Hg17|chr13 (22751497-22751618) | |
| 474-595, gnl|Mm7|chr14 (56100199-56100078) | |
| 474-595, gnl|monDom2|scaffold_15 (32092603-32092765) | |
| 474-595, gnl|oryCun1|scaffold_82633 (3144-2987) | |
| 474-595, gnl|panTro1|chr14 (21938371-21938530) | |
| 474-595, gnl|rheMac2|chr17 (3701218-3701362) | |
| 474-595, gnl|rn3|chr15 (40390270-40390133) | |
| 652-791, gnl|bosTau2|chr12 (19500866-19500727) | |
| 652-791, gnl|canFam2|chr25 (18291175-18291031) | |
| 652-791, gnl|danRer3|chrNA (220494393-220494261) | |
| 652-791, gnl|dasNov1|scaffold_6336 (26474-26618) | |
| 652-791, gnl|fr1|chrUn (53693227-53693088) | |
| 652-791, gnl|galGal2|chr1 (169651061-169650917) | |
| 652-791, gnl|hg17|chr13 (22792761-22792905) | |
| 652-791, gnl|Hg17|chr13 (22792760-22792899) | |
| 652-791, gnl|loxAfr1|scaffold_27006 (1206-1360) | |
| 652-791, gnl|mm7|chr14 (56093004-56092864) | |
| 652-791, gnl|Mm7|chr14 (56093007-56092868) | |
| 652-791, gnl|monDom2|scaffold_15 (32172994-32173138) | |
| 652-791, gnl|oryCun1|scaffold_184649 (85993-85854) | |
| 652-791, gnl|panTro1|chr14 (21979214-21979358) | |
| 652-791, gnl|rheMac2|chr17 (3717535-3717679) | |
| 652-791, gnl|rn3|chr15 (40382381-40382237) | |
| 652-791, gnl|tetNig1|chrUn_random (13555135-13554991) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 89-285, gnl|bosTau2|chr12 (19521075-19520879) | |
| 89-285, gnl|Hg17|chr13 (22675833-22676029) | |
| 89-285, gnl|Mm7|chr14 (56113624-56113428) | |
| 287-387, gnl|bosTau2|chr12 (19518210-19518110) | |
| 287-387, gnl|canFam2|chr25 (18328201-18327974) | |
| 287-387, gnl|dasNov1|scaffold_56509 (43780-43555) | |
| 287-387, gnl|echTel1|scaffold_278256 (19097-18860) | |
| 287-387, gnl|hg17|chr13 (22706675-22706906) | |
| 287-387, gnl|Hg17|chr13 (22706752-22706852) | |
| 287-387, gnl|loxAfr1|scaffold_109217 (1231-1472) | |
| 287-387, gnl|mm7|chr14 (56108184-56107970) | |
| 287-387, gnl|Mm7|chr14 (56108114-56108014) | |
| 287-387, gnl|monDom2|scaffold_15 (32044343-32044555) | |
| 287-387, gnl|oryCun1|scaffold_178103 (113908-114165) | |
| 287-387, gnl|panTro1|chr14 (21893007-21893237) | |
| 287-387, gnl|rheMac2|chr17 (3680689-3680922) | |
| 287-387, gnl|rn3|chr15 (40397895-40397692) | |
| 474-595, gnl|bosTau2|chr12 (19509572-19509451) | |
| 474-595, gnl|canFam2|chr25 (18313537-18313393) | |
| 474-595, gnl|dasNov1|scaffold_56509 (3697-3539) | |
| 474-595, gnl|echTel1|scaffold_265711 (625-751) | |
| 474-595, gnl|galGal2|chr1 (169675037-169674881) | |
| 474-595, gnl|hg17|chr13 (22751487-22751646) | |
| 474-595, gnl|Hg17|chr13 (22751497-22751618) | |
| 474-595, gnl|Mm7|chr14 (56100199-56100078) | |
| 474-595, gnl|monDom2|scaffold_15 (32092603-32092765) | |
| 474-595, gnl|oryCun1|scaffold_82633 (3144-2987) | |
| 474-595, gnl|panTro1|chr14 (21938371-21938530) | |
| 474-595, gnl|rheMac2|chr17 (3701218-3701362) | |
| 474-595, gnl|rn3|chr15 (40390270-40390133) | |
| 652-791, gnl|bosTau2|chr12 (19500866-19500727) | |
| 652-791, gnl|canFam2|chr25 (18291175-18291031) | |
| 652-791, gnl|danRer3|chrNA (220494393-220494261) | |
| 652-791, gnl|dasNov1|scaffold_6336 (26474-26618) | |
| 652-791, gnl|fr1|chrUn (53693227-53693088) | |
| 652-791, gnl|galGal2|chr1 (169651061-169650917) | |
| 652-791, gnl|hg17|chr13 (22792761-22792905) | |
| 652-791, gnl|Hg17|chr13 (22792760-22792899) | |
| 652-791, gnl|loxAfr1|scaffold_27006 (1206-1360) | |
| 652-791, gnl|mm7|chr14 (56093004-56092864) | |
| 652-791, gnl|Mm7|chr14 (56093007-56092868) | |
| 652-791, gnl|monDom2|scaffold_15 (32172994-32173138) | |
| 652-791, gnl|oryCun1|scaffold_184649 (85993-85854) | |
| 652-791, gnl|panTro1|chr14 (21979214-21979358) | |
| 652-791, gnl|rheMac2|chr17 (3717535-3717679) | |
| 652-791, gnl|rn3|chr15 (40382381-40382237) | |
| 652-791, gnl|tetNig1|chrUn_random (13555135-13554991) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| nlu (0.191681) | |
| nep (0.183925) | |
| che (0.136314) | |
| ese (0.126502) | |
| jca (0.11396) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.191681) | |
| nep (0.183925) | |
| che (0.136314) | |
| ese (0.126502) | |
| jca (0.11396) |