Ss1.1-Mixn-0031d16.5
|
GCCGGAAGCTCAGCAGGCGGTGAAGATGGCGGAGAGCAGCAGTCGCGCCGGCAAGAGCAG
CGGGAGCGGCGCGGGGAAGGGGGCGGTGTCAGCCGAGCAGGTAATTGCTGGCTTCAACCG
CCTTCGGCAGGAACAGCGGGGCCTGGCATCCAAAGCAGCTGAGCTGGAGATGGAATTGAA
TGAGCACAGCCTAGTGATCGATACTCTGAAGGAGGTAGATGAAACCCGAAAATGCTACCG
CATGGTTGGAGGGGTGCTGGTAGAGCGGACTGTCAAAGAAGTGCTGCCTGCCTTGGAGAA
CAACAAGGAGCAGATACAGAAGATCATCGAGACACTGACACAGCAGCTTCAGGCAAAGGG
AAAAGAACTAAATGAATTCCGGGAAAAGCACAACATTCGTCTCATGGGGGAAGATGAGAA
GCCAACATCCAAGGAAAACTCAGAAGGGGCTGGAGCTAAGGCCAGCTCAGCTGGAGTGTT
GGTCTCCTAGGGACCAAGGCCTTTGCAGTTTTTCTACCCCGATTCCCACTTCTTCTAATT
TCTCTTTATTATTATTATTATTTTCTCTGCTATTGTAATATTTTTTTGTTAATTAAATGT
TTTGGTCAGAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCCGGAAGCTCAGCAGGCGGTGAAGATGGCGGAGAGCAGCAGTCGCGCCGGCAAGAGCAG
CGGGAGCGGCGCGGGGAAGGGGGCGGTGTCAGCCGAGCAGGTAATTGCTGGCTTCAACCG
CCTTCGGCAGGAACAGCGGGGCCTGGCATCCAAAGCAGCTGAGCTGGAGATGGAATTGAA
TGAGCACAGCCTAGTGATCGATACTCTGAAGGAGGTAGATGAAACCCGAAAATGCTACCG
CATGGTTGGAGGGGTGCTGGTAGAGCGGACTGTCAAAGAAGTGCTGCCTGCCTTGGAGAA
CAACAAGGAGCAGATACAGAAGATCATCGAGACACTGACACAGCAGCTTCAGGCAAAGGG
AAAAGAACTAAATGAATTCCGGGAAAAGCACAACATTCGTCTCATGGGGGAAGATGAGAA
GCCAACATCCAAGGAAAACTCAGAAGGGGCTGGAGCTAAGGCCAGCTCAGCTGGAGTGTT
GGTCTCCTAGGGACCAAGGCCTTTGCAGTTTTTCTACCCCGATTCCCACTTCTTCTAATT
TCTCTTTATTATTATTATTATTTTCTCTGCTATTGTAATATTTTTTTGTTAATTAAATGT
TTTGGTCAGAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-102, gnl|bosTau2|chr3 (7897843-7897944) |
|
1-102, gnl|canFam2|chr38 (24355340-24355252) |
|
1-102, gnl|danRer3|chr13 (3781938-3782025) |
|
1-102, gnl|dasNov1|scaffold_2951 (48451-48545) |
|
1-102, gnl|hg17|chr1 (157900802-157900890) |
|
1-102, gnl|Hg17|chr1 (157900914-157900813) |
|
1-102, gnl|loxAfr1|scaffold_11180 (66999-67087) |
|
1-102, gnl|mm7|chr1 (171315894-171315806) |
|
1-102, gnl|Mm7|chr1 (171315780-171315881) |
|
1-102, gnl|monDom2|scaffold_0 (28733070-28732973) |
|
1-102, gnl|oryCun1|scaffold_208402 (109290-109202) |
|
1-102, gnl|panTro1|chr1 (139967837-139967925) |
|
1-102, gnl|rheMac2|chr1 (139728491-139728579) |
|
1-102, gnl|rn3|chr13 (87435096-87435008) |
| |
|
161-626, gnl|bosTau2|chr11 (80417918-80418381) |
|
161-626, gnl|Hg17|chr1 (157885091-157883426) |
|
161-626, gnl|Mm7|chr1 (171326747-171328255) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-102, gnl|bosTau2|chr3 (7897843-7897944) |
|
1-102, gnl|canFam2|chr38 (24355340-24355252) |
|
1-102, gnl|danRer3|chr13 (3781938-3782025) |
|
1-102, gnl|dasNov1|scaffold_2951 (48451-48545) |
|
1-102, gnl|hg17|chr1 (157900802-157900890) |
|
1-102, gnl|Hg17|chr1 (157900914-157900813) |
|
1-102, gnl|loxAfr1|scaffold_11180 (66999-67087) |
|
1-102, gnl|mm7|chr1 (171315894-171315806) |
|
1-102, gnl|Mm7|chr1 (171315780-171315881) |
|
1-102, gnl|monDom2|scaffold_0 (28733070-28732973) |
|
1-102, gnl|oryCun1|scaffold_208402 (109290-109202) |
|
1-102, gnl|panTro1|chr1 (139967837-139967925) |
|
1-102, gnl|rheMac2|chr1 (139728491-139728579) |
|
1-102, gnl|rn3|chr13 (87435096-87435008) |
| |
|
161-626, gnl|bosTau2|chr11 (80417918-80418381) |
|
161-626, gnl|Hg17|chr1 (157885091-157883426) |
|
161-626, gnl|Mm7|chr1 (171326747-171328255) |
|
sme (0.610874) |
|
cje (0.495704) |
|
col (0.390016) |
|
ova (0.387397) |
|
elu (0.385356) |
|
sto (0.359648) |
|
fbs (0.350693) |
|
spc (0.340097) |
|
cki (0.330469) |
|
bfe (0.299715) |
|
cte (0.29274) |
|
csk (0.281492) |
|
fce (0.271592) |
|
ssp (0.271039) |
|
cov (0.264306) |
|
eep (0.245128) |
|
cbe (0.239234) |
|
pgl (0.236967) |
|
ece (0.229305) |
|
mas (0.210305) |
|
hea (0.204499) |
|
nlu (0.191681) |
|
cmu (0.186393) |
|
sag (0.182715) |
|
fty (0.17584) |
|
ton (0.1755) |
|
cut (0.169924) |
|
fco (0.157208) |
|
isp (0.150376) |
|
lnt (0.142308) |
|
cst (0.140036) |
|
pla (0.133672) |
|
nmm (0.132802) |
|
sug (0.127291) |
|
ebs (0.118301) |
|
ecc (0.115035) |
|
jca (0.11396) |
|
sme (0.610874) |
|
cje (0.495704) |
|
col (0.390016) |
|
ova (0.387397) |
|
elu (0.385356) |
|
sto (0.359648) |
|
fbs (0.350693) |
|
spc (0.340097) |
|
cki (0.330469) |
|
bfe (0.299715) |
|
cte (0.29274) |
|
csk (0.281492) |
|
fce (0.271592) |
|
ssp (0.271039) |
|
cov (0.264306) |
|
eep (0.245128) |
|
cbe (0.239234) |
|
pgl (0.236967) |
|
ece (0.229305) |
|
mas (0.210305) |
|
hea (0.204499) |
|
nlu (0.191681) |
|
cmu (0.186393) |
|
sag (0.182715) |
|
fty (0.17584) |
|
ton (0.1755) |
|
cut (0.169924) |
|
fco (0.157208) |
|
isp (0.150376) |
|
lnt (0.142308) |
|
cst (0.140036) |
|
pla (0.133672) |
|
nmm (0.132802) |
|
sug (0.127291) |
|
ebs (0.118301) |
|
ecc (0.115035) |
|
jca (0.11396) |
