Ss1.1-Mixn-0031e11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGCCGGCTCACACAGACAGGTGGGCTCACACAGACAGATTTGCCATGGAGAAGATTTCC TTATCAGCATTCTTGCTGCTTGTGGCCCTCTCCTATACTCTGGCCAAAGACACCACAGTC AAACCAGGAGCTAAGAAGGACACAAAGGACTCTCAACCCAAACTGCCCCAGACTCTCTCC AGAGGTTGGGGTGATCAACTTATCTGGACTCAGACATATGAAGAAGCTTTATACAAATCC AAGACAAGCAACAAACCCTTGATGATTATTCATCATTTGGATGAATGCCCACACAGTCAA GCTTTAAAGAAAGCATTTGCTGAAAATAAAGAAATCCAGAAATTGGCAGAGCAGTTCGTC CTCCTCAATCTAGTTTATGAAACAACTGACAAACACCTGTCTCCTGATGGCCAGTACGTC CCCAGGATTCTGTTTGTCGACCCATCCCTGACAGTTAGAGCTGACATCACTGGAAGATAC TCAAATCGTCTCTATGCGTATGAACCTTCCGATACAGCTCTGCTGCTTGACAACATGAAG AAAGCTCTCAAGTTGCTGAAGACTGAATTGTAGAGGGAAAAACAAAACCTCCAAGCTCCT CCCTCTGTGTTAGGCCTTAAGACCTGGAATCACAGAAGTTCTGAGAAGACTGTGGAGAAG GCACTGGTGAACATACTCATTAGTCTTCGGTTTCATGTTACAACAGCTATTTTTTAAAAT TTGGTTTTAAGTATACATGTGTGAACACTACCTAACTGTATACTACCATAGTGAGCCATG ATTTTTTACAAAATAAATCCTTTTAGGGGTGTTCAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGCCGGCTCACACAGACAGGTGGGCTCACACAGACAGATTTGCCATGGAGAAGATTTCC TTATCAGCATTCTTGCTGCTTGTGGCCCTCTCCTATACTCTGGCCAAAGACACCACAGTC AAACCAGGAGCTAAGAAGGACACAAAGGACTCTCAACCCAAACTGCCCCAGACTCTCTCC AGAGGTTGGGGTGATCAACTTATCTGGACTCAGACATATGAAGAAGCTTTATACAAATCC AAGACAAGCAACAAACCCTTGATGATTATTCATCATTTGGATGAATGCCCACACAGTCAA GCTTTAAAGAAAGCATTTGCTGAAAATAAAGAAATCCAGAAATTGGCAGAGCAGTTCGTC CTCCTCAATCTAGTTTATGAAACAACTGACAAACACCTGTCTCCTGATGGCCAGTACGTC CCCAGGATTCTGTTTGTCGACCCATCCCTGACAGTTAGAGCTGACATCACTGGAAGATAC TCAAATCGTCTCTATGCGTATGAACCTTCCGATACAGCTCTGCTGCTTGACAACATGAAG AAAGCTCTCAAGTTGCTGAAGACTGAATTGTAGAGGGAAAAACAAAACCTCCAAGCTCCT CCCTCTGTGTTAGGCCTTAAGACCTGGAATCACAGAAGTTCTGAGAAGACTGTGGAGAAG GCACTGGTGAACATACTCATTAGTCTTCGGTTTCATGTTACAACAGCTATTTTTTAAAAT TTGGTTTTAAGTATACATGTGTGAACACTACCTAACTGTATACTACCATAGTGAGCCATG ATTTTTTACAAAATAAATCCTTTTAGGGGTGTTCAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 36-211, gnl|bosTau2|chr4 (8471546-8471372) | |
| 36-211, gnl|canFam2|chr14 (34262678-34262857) | |
| 36-211, gnl|danRer3|chr19 (46652851-46652664) | |
| 36-211, gnl|dasNov1|scaffold_9456 (3740-3546) | |
| 36-211, gnl|hg17|chr7 (16614446-16614645) | |
| 36-211, gnl|Hg17|chr7 (16614670-16614496) | |
| 36-211, gnl|loxAfr1|scaffold_9956 (62982-62792) | |
| 36-211, gnl|mm7|chr12 (33835339-33835143) | |
| 36-211, gnl|Mm7|chr12 (33835116-33835290) | |
| 36-211, gnl|monDom2|scaffold_57 (9675120-9674929) | |
| 36-211, gnl|oryCun1|scaffold_209164 (12153-11954) | |
| 36-211, gnl|panTro1|chr6 (17498315-17498514) | |
| 36-211, gnl|rheMac2|chr3 (109313055-109312856) | |
| 36-211, gnl|rn3|chr6 (54712400-54712203) | |
| 524-817, gnl|bosTau2|chr4 (8201581-8201285) | |
| 524-817, gnl|canFam2|chr14 (34254502-34254747) | |
| 524-817, gnl|dasNov1|scaffold_9456 (13622-13370) | |
| 524-817, gnl|echTel1|scaffold_155913 (8328-8089) | |
| 524-817, gnl|hg17|chr7 (16605491-16605739) | |
| 524-817, gnl|Hg17|chr7 (16605821-16605516) | |
| 524-817, gnl|loxAfr1|scaffold_10845 (5747-5510) | |
| 524-817, gnl|mm7|chr12 (33843724-33843528) | |
| 524-817, gnl|monDom2|scaffold_57 (9682367-9682114) | |
| 524-817, gnl|oryCun1|scaffold_144955 (1025-1263) | |
| 524-817, gnl|panTro1|chr6 (17489368-17489615) | |
| 524-817, gnl|rheMac2|chr3 (109321885-109321639) | |
| 524-817, gnl|rn3|chr6 (54720019-54719825) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 36-211, gnl|bosTau2|chr4 (8471546-8471372) | |
| 36-211, gnl|canFam2|chr14 (34262678-34262857) | |
| 36-211, gnl|danRer3|chr19 (46652851-46652664) | |
| 36-211, gnl|dasNov1|scaffold_9456 (3740-3546) | |
| 36-211, gnl|hg17|chr7 (16614446-16614645) | |
| 36-211, gnl|Hg17|chr7 (16614670-16614496) | |
| 36-211, gnl|loxAfr1|scaffold_9956 (62982-62792) | |
| 36-211, gnl|mm7|chr12 (33835339-33835143) | |
| 36-211, gnl|Mm7|chr12 (33835116-33835290) | |
| 36-211, gnl|monDom2|scaffold_57 (9675120-9674929) | |
| 36-211, gnl|oryCun1|scaffold_209164 (12153-11954) | |
| 36-211, gnl|panTro1|chr6 (17498315-17498514) | |
| 36-211, gnl|rheMac2|chr3 (109313055-109312856) | |
| 36-211, gnl|rn3|chr6 (54712400-54712203) | |
| 524-817, gnl|bosTau2|chr4 (8201581-8201285) | |
| 524-817, gnl|canFam2|chr14 (34254502-34254747) | |
| 524-817, gnl|dasNov1|scaffold_9456 (13622-13370) | |
| 524-817, gnl|echTel1|scaffold_155913 (8328-8089) | |
| 524-817, gnl|hg17|chr7 (16605491-16605739) | |
| 524-817, gnl|Hg17|chr7 (16605821-16605516) | |
| 524-817, gnl|loxAfr1|scaffold_10845 (5747-5510) | |
| 524-817, gnl|mm7|chr12 (33843724-33843528) | |
| 524-817, gnl|monDom2|scaffold_57 (9682367-9682114) | |
| 524-817, gnl|oryCun1|scaffold_144955 (1025-1263) | |
| 524-817, gnl|panTro1|chr6 (17489368-17489615) | |
| 524-817, gnl|rheMac2|chr3 (109321885-109321639) | |
| 524-817, gnl|rn3|chr6 (54720019-54719825) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| pro (1.5361) | |
| nco (1.4556) | |
| duo (1.38241) | |
| col (1.36505) | |
| ill (1.05356) | |
| pty (0.999001) | |
| jej (0.890296) | |
| rec (0.865351) | |
| tra (0.61546) | |
| nmm (0.531209) | |
| lin (0.436808) | |
| lyg (0.266205) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| sin (0.174948) | |
| cst (0.140036) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| eje (0.0988338) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pro (1.5361) | |
| nco (1.4556) | |
| duo (1.38241) | |
| col (1.36505) | |
| ill (1.05356) | |
| pty (0.999001) | |
| jej (0.890296) | |
| rec (0.865351) | |
| tra (0.61546) | |
| nmm (0.531209) | |
| lin (0.436808) | |
| lyg (0.266205) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| sin (0.174948) | |
| cst (0.140036) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| eje (0.0988338) |