Non-Coding RNA Search

Ss1.1-Mixn-0031e21.5

Sequence:


               
               TGCGAAGCCCTGGTGAGGTTGTGCTGTGCTGTCCTCTAGCGGGGGCTGAGGCTCTGCTAG
GCCTTCCTTTAATCTGCGTGAATTTGCCCTCTAGGTTTTTTGCGGGATTGATTATTCCCC
ATTTTCTCCTCATTTTACGCCTGGCTTTAGTGGGAAGCTGGCACTTGGCTGGACCATGTA
GAAATGTGGGATGAGCTTGCAGGTCTCAGGGAGGGTCAGGAGGGCTGGTATTTGTGGAAA
GGGAAGGAGGAGGCCAGGAGGAGAGGGAAACAGCTCTGGGGTGTCACCAACCAGCCATCT
CTGATTTGGCCTCTGCCACCCCTCAGATTACAGTTCAGCTGAAGGGCTCTTGTGCCCGAG
TTTGTTTAAGATTCTCCTGAAAACTGAAGAAGGTCTTTTCCTACTTTAGGCCTCTAATGT
CTCTTCTTTTTCAGTCCACTCTTTTCAATGTTATGGGTCCAGTTTCCAGACCTGCGGGTA
TACCCTGCCTGGCTGCAGACATACTGGCCCCAAGCAGGGTGGTTCAAGAGCCTTAGGTAA
TGCCTGAAAGGGTTCAAGCTGCCCCTGCCGCCTGGTGGCCCAGCTGTAGAGCTGTAGAGC
CCAGCAGGGTAAAGATCCACCATGCTATGGATCTAGCCTCATGCAGATACACTTTTGAGA
TACTTTTCCTCTTGATTTGAAATATTCAGCTTCCTAAGGAAAGACTGAAGCATAAGGAGA
TAAAAGAATTTGTCTTTGTTTTGCAGCGCATCACCTATTTAGATGCAATGTTTATAGAAA
GTTGATTGTTAATAAAGACCAAATTTACACTGGCATGTGTGGTGTAGTTTCTAAAAAGCA
CCTCACATTTGAAGTTTTTCTTAACTTAGAAAATTTCTAGGTGATTAAATGTCTAGTTTT
GTATCCTTTTGTGTATCTTCACTGTTTCTCAGTATTATTGCTTGAATAATTCTGTTTGTG
CTATACACATAAGTGTCTACAGCAATAAAACATTTCTTTAAAAAGGAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCGAAGCCCTGGTGAGGTTGTGCTGTGCTGTCCTCTAGCGGGGGCTGAGGCTCTGCTAG
GCCTTCCTTTAATCTGCGTGAATTTGCCCTCTAGGTTTTTTGCGGGATTGATTATTCCCC
ATTTTCTCCTCATTTTACGCCTGGCTTTAGTGGGAAGCTGGCACTTGGCTGGACCATGTA
GAAATGTGGGATGAGCTTGCAGGTCTCAGGGAGGGTCAGGAGGGCTGGTATTTGTGGAAA
GGGAAGGAGGAGGCCAGGAGGAGAGGGAAACAGCTCTGGGGTGTCACCAACCAGCCATCT
CTGATTTGGCCTCTGCCACCCCTCAGATTACAGTTCAGCTGAAGGGCTCTTGTGCCCGAG
TTTGTTTAAGATTCTCCTGAAAACTGAAGAAGGTCTTTTCCTACTTTAGGCCTCTAATGT
CTCTTCTTTTTCAGTCCACTCTTTTCAATGTTATGGGTCCAGTTTCCAGACCTGCGGGTA
TACCCTGCCTGGCTGCAGACATACTGGCCCCAAGCAGGGTGGTTCAAGAGCCTTAGGTAA
TGCCTGAAAGGGTTCAAGCTGCCCCTGCCGCCTGGTGGCCCAGCTGTAGAGCTGTAGAGC
CCAGCAGGGTAAAGATCCACCATGCTATGGATCTAGCCTCATGCAGATACACTTTTGAGA
TACTTTTCCTCTTGATTTGAAATATTCAGCTTCCTAAGGAAAGACTGAAGCATAAGGAGA
TAAAAGAATTTGTCTTTGTTTTGCAGCGCATCACCTATTTAGATGCAATGTTTATAGAAA
GTTGATTGTTAATAAAGACCAAATTTACACTGGCATGTGTGGTGTAGTTTCTAAAAAGCA
CCTCACATTTGAAGTTTTTCTTAACTTAGAAAATTTCTAGGTGATTAAATGTCTAGTTTT
GTATCCTTTTGTGTATCTTCACTGTTTCTCAGTATTATTGCTTGAATAATTCTGTTTGTG
CTATACACATAAGTGTCTACAGCAATAAAACATTTCTTTAAAAAGGAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               159-960, gnl|bosTau2|chr28 (34261474-34260653)
               

               
               159-960, gnl|Hg17|chr10 (45270993-45270103)
               

               
               159-960, gnl|Mm7|chr6 (116434340-116435147)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               159-960, gnl|bosTau2|chr28 (34261474-34260653)
               

               
               159-960, gnl|Hg17|chr10 (45270993-45270103)
               

               
               159-960, gnl|Mm7|chr6 (116434340-116435147)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

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               vin (0.332557)
               

               
               nbm (0.297974)
               

               
               fce (0.271592)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               eli (0.151814)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               nbm (0.297974)
               

               
               fce (0.271592)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               eli (0.151814)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	159-960, gnl\|bosTau2\|chr28 (34261474-34260653)
	159-960, gnl\|Hg17\|chr10 (45270993-45270103)
	159-960, gnl\|Mm7\|chr6 (116434340-116435147)

	vin (0.332557)
	nbm (0.297974)
	fce (0.271592)
	fhi (0.169578)
	nje (0.16592)
	cje (0.165235)
	eli (0.151814)
	spl (0.143184)
	hyp (0.142837)
	pla (0.133672)
	pgl (0.118483)
	cty (0.10408)
	eje (0.0988338)