Non-Coding RNA Search

Ss1.1-Mixn-0031f01.5

Sequence:


               
               AGGAAATAAGGCCGATGAGGAGCAGAAACGCCAGGTGGGAAGAGAGCAAGACGGGTCGGC
ATGGTGAAAGGAAGAGGAGGGCAGGAATAGTTATAAATCATCGACTAATGAGACATGTAG
AGCTGCCTCTTTAGAATGAAGTCACAACCATAGCTTAGGAGGCTTCCTTGACAACTGACT
CCTCAGGCGTCAAGACATATGCAGTCGCACAGAGGGGGGGTGGGGAGGTCAGCAGTGCCA
ACCCTCGGCGTGCCCTCAGCCAGGGCCTCGAGGAAGGGAAGTTATCCTGGCCATCAGCTC
CACCTGTGGATCAGAATCTCCACTTCCCTCAAGATCAGGCTGAGCACCATTGCCTTTCTC
TCCCAGCCCCCTCAGGAAAGAGGGGCTGTATTTTTACTGTATTCTTGGGTTTTGGAAGGG
AAAACTTGAGGCTGGGATCCTACGGCCTGGTAAGCCCCATCCACAAGGGCCACAGTCAGG
GAGAGGTTGAGGGCAGGAGGGTTGGGATTTTAGGGTGCAGCTATGCTCACCAGGTACCAG
AGTCAGCTTCTCACCCCTAAACTCCAGTGCAGGAGGTGGCCTGGGACCTGGCCTTTGGCC
CAGACTGTTGAGCAGGCACACCTGCCTGTTGGCTCCTCACCACCTGTGCACCTGTTGCCT
CGAGACTCAGCCCCAGGCACTCCACCTGCTCTAGAGCCCCACCATCTCCCTGTGATGGGT
GAACTTGTGTGCTGTGTCTCGGGTCCAGTATATAAATTGTGAGCAGGGTTCATCTATTTT
AAACACAGATGTTTACAAAATAAAGAATATTTCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAAATAAGGCCGATGAGGAGCAGAAACGCCAGGTGGGAAGAGAGCAAGACGGGTCGGC
ATGGTGAAAGGAAGAGGAGGGCAGGAATAGTTATAAATCATCGACTAATGAGACATGTAG
AGCTGCCTCTTTAGAATGAAGTCACAACCATAGCTTAGGAGGCTTCCTTGACAACTGACT
CCTCAGGCGTCAAGACATATGCAGTCGCACAGAGGGGGGGTGGGGAGGTCAGCAGTGCCA
ACCCTCGGCGTGCCCTCAGCCAGGGCCTCGAGGAAGGGAAGTTATCCTGGCCATCAGCTC
CACCTGTGGATCAGAATCTCCACTTCCCTCAAGATCAGGCTGAGCACCATTGCCTTTCTC
TCCCAGCCCCCTCAGGAAAGAGGGGCTGTATTTTTACTGTATTCTTGGGTTTTGGAAGGG
AAAACTTGAGGCTGGGATCCTACGGCCTGGTAAGCCCCATCCACAAGGGCCACAGTCAGG
GAGAGGTTGAGGGCAGGAGGGTTGGGATTTTAGGGTGCAGCTATGCTCACCAGGTACCAG
AGTCAGCTTCTCACCCCTAAACTCCAGTGCAGGAGGTGGCCTGGGACCTGGCCTTTGGCC
CAGACTGTTGAGCAGGCACACCTGCCTGTTGGCTCCTCACCACCTGTGCACCTGTTGCCT
CGAGACTCAGCCCCAGGCACTCCACCTGCTCTAGAGCCCCACCATCTCCCTGTGATGGGT
GAACTTGTGTGCTGTGTCTCGGGTCCAGTATATAAATTGTGAGCAGGGTTCATCTATTTT
AAACACAGATGTTTACAAAATAAAGAATATTTCAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               213-369, + strand, RNAz p=0.975082
               

               
               562-680, - strand, RNAz p=0.727982

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               213-369, + strand, RNAz p=0.975082
               

               
               562-680, - strand, RNAz p=0.727982

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               96-816, gnl|bosTau2|chr10 (52386124-52385406)
               

               
               96-816, gnl|canFam2|chr8 (42358774-42359199)
               

               
               96-816, gnl|dasNov1|scaffold_58348 (3717-3259)
               

               
               96-816, gnl|echTel1|scaffold_211816 (10080-10530)
               

               
               96-816, gnl|hg17|chr14 (64482287-64482717)
               

               
               96-816, gnl|Hg17|chr14 (64482988-64482290)
               

               
               96-816, gnl|mm7|chr12 (74756647-74757046)
               

               
               96-816, gnl|monDom2|scaffold_8 (78800986-78801437)
               

               
               96-816, gnl|panTro1|chr15 (64085317-64085747)
               

               
               96-816, gnl|rheMac2|chr7 (127946072-127946504)
               

               
               96-816, gnl|rn3|chr6 (99382395-99382776)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               96-816, gnl|bosTau2|chr10 (52386124-52385406)
               

               
               96-816, gnl|canFam2|chr8 (42358774-42359199)
               

               
               96-816, gnl|dasNov1|scaffold_58348 (3717-3259)
               

               
               96-816, gnl|echTel1|scaffold_211816 (10080-10530)
               

               
               96-816, gnl|hg17|chr14 (64482287-64482717)
               

               
               96-816, gnl|Hg17|chr14 (64482988-64482290)
               

               
               96-816, gnl|mm7|chr12 (74756647-74757046)
               

               
               96-816, gnl|monDom2|scaffold_8 (78800986-78801437)
               

               
               96-816, gnl|panTro1|chr15 (64085317-64085747)
               

               
               96-816, gnl|rheMac2|chr7 (127946072-127946504)
               

               
               96-816, gnl|rn3|chr6 (99382395-99382776)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               mcp (0.170648)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)
               

               
               ecc (0.115035)

	213-369, + strand, RNAz p=0.975082
	562-680, - strand, RNAz p=0.727982

	96-816, gnl\|bosTau2\|chr10 (52386124-52385406)
	96-816, gnl\|canFam2\|chr8 (42358774-42359199)
	96-816, gnl\|dasNov1\|scaffold_58348 (3717-3259)
	96-816, gnl\|echTel1\|scaffold_211816 (10080-10530)
	96-816, gnl\|hg17\|chr14 (64482287-64482717)
	96-816, gnl\|Hg17\|chr14 (64482988-64482290)
	96-816, gnl\|mm7\|chr12 (74756647-74757046)
	96-816, gnl\|monDom2\|scaffold_8 (78800986-78801437)
	96-816, gnl\|panTro1\|chr15 (64085317-64085747)
	96-816, gnl\|rheMac2\|chr7 (127946072-127946504)
	96-816, gnl\|rn3\|chr6 (99382395-99382776)