Non-Coding RNA Search

Ss1.1-Mixn-0031f02.5

Sequence:


               
               TGTCTTAGAAAACAGGAAAAGCACTTGTTCCTGTTGTGTGGTTCATATTTACGAGGCAAC
ATGTCACAACAGTAACCTCCACATCACTTCCCCTCTCCAGCCAAGCAACCAAACAAAAAA
CCCCTCATTCTTGTTTCTGTTTTTTGCTTCCTTGGCTTTTTATATTGCCCCCTGCAAAAG
AAGAGGTCTCCTCTCCCTCCCCTTTAGTGAAAAAGTCAACAGTGCAACTAAATTTTTCTA
GGAAGATGAGGAGTATTTATAGAATATGCATTTGGTTTTCCTTTGGGATATGATTAACGT
TTCAGAAGAATCCCTCTAGAAACATTGCAGTTCATCTCTGAAGAAGTTTAAGAAAATGTG
GGTAACAATTCCAGCCTGAAGATGAAGATACGAAACAACTGCAGATGGTGCGCAGGTTCT
GAGTTGGGCTAGATGATATCCCTAGAATGCCATCATGGGCACTCAGAGGGGACCCTCGCC
TCAAAGAGAGGCGCAGTCTTTGCTGCTTTTCCTTGGGTTTGTTGCGGGCTAACAGTAGTT
CAGTAATGTTATTTCAGGAAGATTGTCTTGCTGCTTTCTGGATAAAAGCCCTAGGAACTT
TTCTTTCTAAGGCAGCTCTTTCTCTCCCTAAAAGCCAGTTTGCCGGAATGGGCTTGGCAG
GCACTTTTTTTTTTTCCCAGGAAGGGGCTGGGCAGGGCTGCCCTTTATCATGGGCCTTTT
TTCCCTATGGGAAGCTCACGCTGCTAAGAGTTGGGAGTTATTCTTTTCAGCTGTTTGGAA
ACTGCTTTTCTGATCTATACAAGACATTGGTGGAAGGGGCAGCGTTGGGGAGCAGGGGAA
AGAGCATTATAGGAGCTTCCTCTGAGATGGCCCACCTAGACAAAAAAGATCTGTTTTAGT
GAATGATGCTCTATAGTACTTTCCCTTTTCATGTTCCTAAACCAGATCAAGTTGTTACTG
ATCTTAGATGACCTCATGAAAATCTGAAAAACTTTTTTTTGATTGGGAAATATAAATAAA
AGTGAACAGAATCTGCTGACACAGCTAATTCGGAAAAGTATGTCTGCTTTTGTCCTTTTG
CTATTGGTGTTTTTTGCTCACTTAAAAAAAAAATAAACAGTTCTAAAAGCAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTCTTAGAAAACAGGAAAAGCACTTGTTCCTGTTGTGTGGTTCATATTTACGAGGCAAC
ATGTCACAACAGTAACCTCCACATCACTTCCCCTCTCCAGCCAAGCAACCAAACAAAAAA
CCCCTCATTCTTGTTTCTGTTTTTTGCTTCCTTGGCTTTTTATATTGCCCCCTGCAAAAG
AAGAGGTCTCCTCTCCCTCCCCTTTAGTGAAAAAGTCAACAGTGCAACTAAATTTTTCTA
GGAAGATGAGGAGTATTTATAGAATATGCATTTGGTTTTCCTTTGGGATATGATTAACGT
TTCAGAAGAATCCCTCTAGAAACATTGCAGTTCATCTCTGAAGAAGTTTAAGAAAATGTG
GGTAACAATTCCAGCCTGAAGATGAAGATACGAAACAACTGCAGATGGTGCGCAGGTTCT
GAGTTGGGCTAGATGATATCCCTAGAATGCCATCATGGGCACTCAGAGGGGACCCTCGCC
TCAAAGAGAGGCGCAGTCTTTGCTGCTTTTCCTTGGGTTTGTTGCGGGCTAACAGTAGTT
CAGTAATGTTATTTCAGGAAGATTGTCTTGCTGCTTTCTGGATAAAAGCCCTAGGAACTT
TTCTTTCTAAGGCAGCTCTTTCTCTCCCTAAAAGCCAGTTTGCCGGAATGGGCTTGGCAG
GCACTTTTTTTTTTTCCCAGGAAGGGGCTGGGCAGGGCTGCCCTTTATCATGGGCCTTTT
TTCCCTATGGGAAGCTCACGCTGCTAAGAGTTGGGAGTTATTCTTTTCAGCTGTTTGGAA
ACTGCTTTTCTGATCTATACAAGACATTGGTGGAAGGGGCAGCGTTGGGGAGCAGGGGAA
AGAGCATTATAGGAGCTTCCTCTGAGATGGCCCACCTAGACAAAAAAGATCTGTTTTAGT
GAATGATGCTCTATAGTACTTTCCCTTTTCATGTTCCTAAACCAGATCAAGTTGTTACTG
ATCTTAGATGACCTCATGAAAATCTGAAAAACTTTTTTTTGATTGGGAAATATAAATAAA
AGTGAACAGAATCTGCTGACACAGCTAATTCGGAAAAGTATGTCTGCTTTTGTCCTTTTG
CTATTGGTGTTTTTTGCTCACTTAAAAAAAAAATAAACAGTTCTAAAAGCAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               79-192, - strand, RNAz p=0.89708
               

               
               717-826, + strand, RNAz p=0.685431

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-192, - strand, RNAz p=0.89708
               

               
               717-826, + strand, RNAz p=0.685431

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_024095, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_024095, +

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-578, gnl|bosTau2|chr5 (25666621-25666038)
               

               
               1-578, gnl|Hg17|chr12 (46829351-46828448)
               

               
               1-578, gnl|Mm7|chr15 (98138924-98138426)
               


               
               587-1132, gnl|bosTau2|chr5 (25666008-25665447)
               

               
               587-1132, gnl|Hg17|chr12 (46828400-46827839)
               

               
               587-1132, gnl|Mm7|chr15 (98138399-98137821)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-578, gnl|bosTau2|chr5 (25666621-25666038)
               

               
               1-578, gnl|Hg17|chr12 (46829351-46828448)
               

               
               1-578, gnl|Mm7|chr15 (98138924-98138426)
               


               
               587-1132, gnl|bosTau2|chr5 (25666008-25665447)
               

               
               587-1132, gnl|Hg17|chr12 (46828400-46827839)
               

               
               587-1132, gnl|Mm7|chr15 (98138399-98137821)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

Help | Less info


               
               hea (0.408998)
               

               
               sme (0.305437)
               

               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               lun (0.150489)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.408998)
               

               
               sme (0.305437)
               

               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               lun (0.150489)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

	79-192, - strand, RNAz p=0.89708
	717-826, + strand, RNAz p=0.685431

	1-578, gnl\|bosTau2\|chr5 (25666621-25666038)
	1-578, gnl\|Hg17\|chr12 (46829351-46828448)
	1-578, gnl\|Mm7\|chr15 (98138924-98138426)

	587-1132, gnl\|bosTau2\|chr5 (25666008-25665447)
	587-1132, gnl\|Hg17\|chr12 (46828400-46827839)
	587-1132, gnl\|Mm7\|chr15 (98138399-98137821)

	hea (0.408998)
	sme (0.305437)
	fce (0.271592)
	ece (0.229305)
	mas (0.210305)
	cmu (0.186393)
	sto (0.179824)
	ton (0.1755)
	fbs (0.175346)
	nje (0.16592)
	lun (0.150489)
	csk (0.140746)
	cst (0.140036)
	ste (0.135208)
	ecc (0.115035)
	ldo (0.0970026)