Non-Coding RNA Search

Ss1.1-Mixn-0031g02.5.5

Sequence:


               
               GCTTCCTCTTTAGTGAATCATGTCCAAGGTCCAGGAAATCCAGTGTTGGTGAAGGCTGTC
ATTCTCCTGCATATCTGCAAGCCACCACCCCTTGTATAGGGCTCTTTTGTTGTGCAGGGA
CTGCCTCCTCCAGAAATTCCTGAGACCTGCCTAGTTTTAGTTGCTTTCCCCAGCAGCGTG
GCAGCATCCGTGGCTGAGGGATACAGGTTGTGGTTTGGTTGAAATGTCATTTCCAAGAAA
TCTCTCCTTTTCTCCCATTTACTCATCCTGCTAAGGTGTCTGAAAGTATATGGGACCCCA
GTTCAGTGTGAGTTTATGGAACCCAGGGCTTCATCCAAGTGAGAGAAGAGGAGAAGTATT
TAGAGCATGTTTCTTGGAGAGGGGCCAGTGCAGTGCCACCTTGCAGGTTTGCAGGCTGAT
GACTTGGGTTCCGAGCAGGAGCTTGGCTAGCAGGTGGGATGATGGGTTGGAAGCACCCTG
TCCGGAAGGAGTAATGGAGCCTGGGGCAGTGCCAGGCTTACAGCCTCCTGCTGCTTTGCA
GTAGAGGAGAGGTCCACCAGTGGTGGGGCTGGATAGGTTCCCATAGGTGTGGGCAAGGCA
TCCACCTGCCCTTGCTCTCCCTCATTGTTCCCTGTCCTCCCTGTCAGGATGCTGGGAAAG
GAGCTGGAGGAGTTTTTGAGCAGCAAATGAGTGGGATGGAGAGAAAGAGCACCTGTCCGT
GGGTAATGGATGTTAAGATTATGGAAAAACCCCAGATTTCTAAGATTAGTGAAGTTGGAG
ACCACAGGGCCATCTGACTCCTTCAGGGAACTCTGATGGGCTAGCCTATGGGAAGTTCAG
CCCTAGCCTCTCCTCTACAACGTAGCCCTCTCATGGTTGGTCACATCATAAGGCATCAGC
CAGGAGAACCAAGGTCTCTCAGGGCATCTTGGAATATATTGCAGGGAGGTGACGAAGAAG
AGGAACTTCTGCATACATGATAGAAGGCTCTCGTCTTGGCGTACCTCTTGTCTCACAATC
AATGTACTTTTTATTTGGAGAGTCACCGGTGACCTGCCTCACCAGCCTCCTGTATCTAGT
CAGGTCCCTTCTCAGTACTGTACTGGTTCAGTGCATCAGGAATGGGTGTGTGGGTGTGTA
TGAGTGTGAGTGTGGGTATGTACATACCAATAAACAACCTGGTTTTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTCCTCTTTAGTGAATCATGTCCAAGGTCCAGGAAATCCAGTGTTGGTGAAGGCTGTC
ATTCTCCTGCATATCTGCAAGCCACCACCCCTTGTATAGGGCTCTTTTGTTGTGCAGGGA
CTGCCTCCTCCAGAAATTCCTGAGACCTGCCTAGTTTTAGTTGCTTTCCCCAGCAGCGTG
GCAGCATCCGTGGCTGAGGGATACAGGTTGTGGTTTGGTTGAAATGTCATTTCCAAGAAA
TCTCTCCTTTTCTCCCATTTACTCATCCTGCTAAGGTGTCTGAAAGTATATGGGACCCCA
GTTCAGTGTGAGTTTATGGAACCCAGGGCTTCATCCAAGTGAGAGAAGAGGAGAAGTATT
TAGAGCATGTTTCTTGGAGAGGGGCCAGTGCAGTGCCACCTTGCAGGTTTGCAGGCTGAT
GACTTGGGTTCCGAGCAGGAGCTTGGCTAGCAGGTGGGATGATGGGTTGGAAGCACCCTG
TCCGGAAGGAGTAATGGAGCCTGGGGCAGTGCCAGGCTTACAGCCTCCTGCTGCTTTGCA
GTAGAGGAGAGGTCCACCAGTGGTGGGGCTGGATAGGTTCCCATAGGTGTGGGCAAGGCA
TCCACCTGCCCTTGCTCTCCCTCATTGTTCCCTGTCCTCCCTGTCAGGATGCTGGGAAAG
GAGCTGGAGGAGTTTTTGAGCAGCAAATGAGTGGGATGGAGAGAAAGAGCACCTGTCCGT
GGGTAATGGATGTTAAGATTATGGAAAAACCCCAGATTTCTAAGATTAGTGAAGTTGGAG
ACCACAGGGCCATCTGACTCCTTCAGGGAACTCTGATGGGCTAGCCTATGGGAAGTTCAG
CCCTAGCCTCTCCTCTACAACGTAGCCCTCTCATGGTTGGTCACATCATAAGGCATCAGC
CAGGAGAACCAAGGTCTCTCAGGGCATCTTGGAATATATTGCAGGGAGGTGACGAAGAAG
AGGAACTTCTGCATACATGATAGAAGGCTCTCGTCTTGGCGTACCTCTTGTCTCACAATC
AATGTACTTTTTATTTGGAGAGTCACCGGTGACCTGCCTCACCAGCCTCCTGTATCTAGT
CAGGTCCCTTCTCAGTACTGTACTGGTTCAGTGCATCAGGAATGGGTGTGTGGGTGTGTA
TGAGTGTGAGTGTGGGTATGTACATACCAATAAACAACCTGGTTTTGA

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

Help | Less info


               
               1-534, gnl|bosTau2|chr16 (116979-117532)
               

               
               1-534, gnl|Hg17|chr1 (199778288-199778855)
               

               
               1-534, gnl|Mm7|chr1 (134187680-134187196)
               


               
               630-947, gnl|bosTau2|chr16 (117585-117909)
               

               
               630-947, gnl|Hg17|chr1 (199778924-199779298)
               

               
               630-947, gnl|Mm7|chr1 (134187115-134186798)
               


               
               978-1188, gnl|bosTau2|chr16 (117903-118129)
               

               
               978-1188, gnl|canFam2|chr7 (3119059-3118794)
               

               
               978-1188, gnl|dasNov1|scaffold_221834 (961-693)
               

               
               978-1188, gnl|echTel1|scaffold_311770 (54645-54332)
               

               
               978-1188, gnl|hg17|chr1 (199779259-199779536)
               

               
               978-1188, gnl|Hg17|chr1 (199779292-199779512)
               

               
               978-1188, gnl|mm7|chr1 (134186836-134186563)
               

               
               978-1188, gnl|Mm7|chr1 (134186804-134186577)
               

               
               978-1188, gnl|monDom2|scaffold_13 (3066124-3066419)
               

               
               978-1188, gnl|oryCun1|scaffold_133807 (3758-3515)
               

               
               978-1188, gnl|panTro1|chr1 (182633401-182633678)
               

               
               978-1188, gnl|rheMac2|chr1 (167361161-167360877)
               

               
               978-1188, gnl|rn3|chr13 (47266390-47266117)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-534, gnl|bosTau2|chr16 (116979-117532)
               

               
               1-534, gnl|Hg17|chr1 (199778288-199778855)
               

               
               1-534, gnl|Mm7|chr1 (134187680-134187196)
               


               
               630-947, gnl|bosTau2|chr16 (117585-117909)
               

               
               630-947, gnl|Hg17|chr1 (199778924-199779298)
               

               
               630-947, gnl|Mm7|chr1 (134187115-134186798)
               


               
               978-1188, gnl|bosTau2|chr16 (117903-118129)
               

               
               978-1188, gnl|canFam2|chr7 (3119059-3118794)
               

               
               978-1188, gnl|dasNov1|scaffold_221834 (961-693)
               

               
               978-1188, gnl|echTel1|scaffold_311770 (54645-54332)
               

               
               978-1188, gnl|hg17|chr1 (199779259-199779536)
               

               
               978-1188, gnl|Hg17|chr1 (199779292-199779512)
               

               
               978-1188, gnl|mm7|chr1 (134186836-134186563)
               

               
               978-1188, gnl|Mm7|chr1 (134186804-134186577)
               

               
               978-1188, gnl|monDom2|scaffold_13 (3066124-3066419)
               

               
               978-1188, gnl|oryCun1|scaffold_133807 (3758-3515)
               

               
               978-1188, gnl|panTro1|chr1 (182633401-182633678)
               

               
               978-1188, gnl|rheMac2|chr1 (167361161-167360877)
               

               
               978-1188, gnl|rn3|chr13 (47266390-47266117)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               fcc (0.197785)
               

               
               ill (0.175593)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               ill (0.175593)

	1-534, gnl\|bosTau2\|chr16 (116979-117532)
	1-534, gnl\|Hg17\|chr1 (199778288-199778855)
	1-534, gnl\|Mm7\|chr1 (134187680-134187196)

	630-947, gnl\|bosTau2\|chr16 (117585-117909)
	630-947, gnl\|Hg17\|chr1 (199778924-199779298)
	630-947, gnl\|Mm7\|chr1 (134187115-134186798)

	978-1188, gnl\|bosTau2\|chr16 (117903-118129)
	978-1188, gnl\|canFam2\|chr7 (3119059-3118794)
	978-1188, gnl\|dasNov1\|scaffold_221834 (961-693)
	978-1188, gnl\|echTel1\|scaffold_311770 (54645-54332)
	978-1188, gnl\|hg17\|chr1 (199779259-199779536)
	978-1188, gnl\|Hg17\|chr1 (199779292-199779512)
	978-1188, gnl\|mm7\|chr1 (134186836-134186563)
	978-1188, gnl\|Mm7\|chr1 (134186804-134186577)
	978-1188, gnl\|monDom2\|scaffold_13 (3066124-3066419)
	978-1188, gnl\|oryCun1\|scaffold_133807 (3758-3515)
	978-1188, gnl\|panTro1\|chr1 (182633401-182633678)
	978-1188, gnl\|rheMac2\|chr1 (167361161-167360877)
	978-1188, gnl\|rn3\|chr13 (47266390-47266117)