Non-Coding RNA Search

Ss1.1-Mixn-0031g23.5

Sequence:


               
               GACAGAACCGGCAGCGGCGCAGCGAGCGAGCAGCGACCGCGCTCTTACCCAGCTCAGCCC
CGCAGCTCCTACCTGTCTCCGCCCCTCAGCCCCTCGCCCGGCTTTGACTACCTGCGATCA
TGATGTTCTCCGGCTTCAACGCCGACTACGAGGCGTCATCATCCCGCTGCAGCAGCGCCT
CCCCTGCCGGGGACAGTCTCTCCTACTACCACTCACCGGCCGACTCCTTCTCCAGCATGG
GCTCTCCCGTCAATGCGCAGGACTTCTGCACCGATCTGGCCGTCTCCAGTGCCAACTTCA
TCCCAACGGTGACTGCTATCTCGACCAGCCCAGACCTGCAGTGGCTAGTGCAACCCACCC
TGGTCTCCTCGGTTGCCCCATCCCAGACCAGAGCCCCTCACCCCTACGGAGTCCCCACTC
CCTCGGCTGGGGCTTACTCCAGGGCTGGAGTCGTGAAGACCATGCCAGGAGGCAGAGCTC
AGAGCATTGGCAGAAGGGGCAAGGTGGAACAGTTGTCCCCAGAAGAAGAAGAGAAAAGGA
GAATCCGAAGGGAAAGGAATAAGATGGCTGCAGCCAAATGCCGGAACCGGAGGAGGGAGC
TGACTGACACACTCCAAGCGGAGACAGACCAGCTAGAAGACGAGAAGTCTGCTTTGCAGA
CTGAGATCGCCAACCTGCTGAAGGAGAAGGAAAAACTCGAGTTCATCCTGGCAGCTCACC
GACCTGCCTGCAAGATCCCTGATGACCTGGGCTTCCCTGAAGAGATGTCTGTGGCTTCCC
TTGATCTGAGTGGGGGCCTGCCTGAGGCTGCCACCCCCGAATCTGAGGAGGCCTTCACCC
TGCCCCTCCTCAATGACCCGGAGCCCAAGCCCTCCGTGGAGCCAGTCAAGAACGTCAGCA
GCATGGAGCTGAAGGCCGAGCCCTTTGATGACTTCCTGTTCCCAGCATCGTCCAGGCCCG
GCGGCTCTGAGACAGCCCGCTCTGTGCCGGACATGGACCTGTCTGGTTCCTTCTATGCAG
CAGACTGGGAGCCCCTGCATGGTGGCTCCCTGGGGATGGGGCCCATGGCCACAGAGCTGG
AGCCCCTGTGTACCCCGGTGGTCACCTGCACCCCCAGCTGCACTACTTACACGTCTTCCT
TCGTCTTTACCTACCCCGAGGCTGACTCCTTCCCCAGCTGTGCGGCTGCCCACCGCAAGG
GCAGCAGCAGCAACGAGCCTTCCTCTGACTCGCTCAGCTCACCCACGCTGCTGGCCCTGT
GAGCGGGCAGAGAGGGGAGGCAGCAGGCAGGCACGCGCCACTGCCCGAGTCGGTGCATTA
TGGAGAGGAGAAACACGTCTTCCCTCGAGGGTTCCCGTAGACCTAGGGAGGACCTTATCT
GGGCGTGAAACACACCACCAGGCCGTGGGCCTCAAGGACTTGAAAGCATCCACGTGTGGA
CTCGAGTCCTTACCTCTTCTGGAGATGTAGCAAAACGCATGGAGTGTGTATTGTCCCCAG
TGACACATCTGAGAGCTGGTAGTTAGTAGCATGTTGAGCCAGGCCTGGGTCTGTGTCTCT
TTTTCTCTTGCTCTTTAGTCTTCTCATAGCATTAACTAATCTATTGGGTTCATTATTGGA
ATTAACCTGGTGCTGGATATTTTCAAATTGTATCTAGTGCAGCTGATTTTAACAATAACT
ACTGTGTTCCTGGCAATAGTGTGTTCTGATTAGCGATGACCAATATTAAACTAAGCAAAG
ATATGACTTTATTTTCTAGTAGATAGAAATAAATAGCTATATCCATGTACTGTAGTTTTC
CTTCGGCATCAATGTTCATTGTAATGTTACTGATCATGCATTGGTGAGGTGGTCTGAATG
TTCTGACATTAACAGTTTTCCATGAAAACGTTTTATTGTGTTTTTAATTTATTTATTAAG
ATGGATTCTCAGATATTTATATTTTTATTTTATTTTTTTCTACCTTGAGGTCTTTTGACA
TGTGGAAAGTGAATTTGAATGAAAAATTTAAGCATTGTTTGCTTATTGTTCAAAGACATT
GTCAATAAAAGCATTTACGTTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACAGAACCGGCAGCGGCGCAGCGAGCGAGCAGCGACCGCGCTCTTACCCAGCTCAGCCC
CGCAGCTCCTACCTGTCTCCGCCCCTCAGCCCCTCGCCCGGCTTTGACTACCTGCGATCA
TGATGTTCTCCGGCTTCAACGCCGACTACGAGGCGTCATCATCCCGCTGCAGCAGCGCCT
CCCCTGCCGGGGACAGTCTCTCCTACTACCACTCACCGGCCGACTCCTTCTCCAGCATGG
GCTCTCCCGTCAATGCGCAGGACTTCTGCACCGATCTGGCCGTCTCCAGTGCCAACTTCA
TCCCAACGGTGACTGCTATCTCGACCAGCCCAGACCTGCAGTGGCTAGTGCAACCCACCC
TGGTCTCCTCGGTTGCCCCATCCCAGACCAGAGCCCCTCACCCCTACGGAGTCCCCACTC
CCTCGGCTGGGGCTTACTCCAGGGCTGGAGTCGTGAAGACCATGCCAGGAGGCAGAGCTC
AGAGCATTGGCAGAAGGGGCAAGGTGGAACAGTTGTCCCCAGAAGAAGAAGAGAAAAGGA
GAATCCGAAGGGAAAGGAATAAGATGGCTGCAGCCAAATGCCGGAACCGGAGGAGGGAGC
TGACTGACACACTCCAAGCGGAGACAGACCAGCTAGAAGACGAGAAGTCTGCTTTGCAGA
CTGAGATCGCCAACCTGCTGAAGGAGAAGGAAAAACTCGAGTTCATCCTGGCAGCTCACC
GACCTGCCTGCAAGATCCCTGATGACCTGGGCTTCCCTGAAGAGATGTCTGTGGCTTCCC
TTGATCTGAGTGGGGGCCTGCCTGAGGCTGCCACCCCCGAATCTGAGGAGGCCTTCACCC
TGCCCCTCCTCAATGACCCGGAGCCCAAGCCCTCCGTGGAGCCAGTCAAGAACGTCAGCA
GCATGGAGCTGAAGGCCGAGCCCTTTGATGACTTCCTGTTCCCAGCATCGTCCAGGCCCG
GCGGCTCTGAGACAGCCCGCTCTGTGCCGGACATGGACCTGTCTGGTTCCTTCTATGCAG
CAGACTGGGAGCCCCTGCATGGTGGCTCCCTGGGGATGGGGCCCATGGCCACAGAGCTGG
AGCCCCTGTGTACCCCGGTGGTCACCTGCACCCCCAGCTGCACTACTTACACGTCTTCCT
TCGTCTTTACCTACCCCGAGGCTGACTCCTTCCCCAGCTGTGCGGCTGCCCACCGCAAGG
GCAGCAGCAGCAACGAGCCTTCCTCTGACTCGCTCAGCTCACCCACGCTGCTGGCCCTGT
GAGCGGGCAGAGAGGGGAGGCAGCAGGCAGGCACGCGCCACTGCCCGAGTCGGTGCATTA
TGGAGAGGAGAAACACGTCTTCCCTCGAGGGTTCCCGTAGACCTAGGGAGGACCTTATCT
GGGCGTGAAACACACCACCAGGCCGTGGGCCTCAAGGACTTGAAAGCATCCACGTGTGGA
CTCGAGTCCTTACCTCTTCTGGAGATGTAGCAAAACGCATGGAGTGTGTATTGTCCCCAG
TGACACATCTGAGAGCTGGTAGTTAGTAGCATGTTGAGCCAGGCCTGGGTCTGTGTCTCT
TTTTCTCTTGCTCTTTAGTCTTCTCATAGCATTAACTAATCTATTGGGTTCATTATTGGA
ATTAACCTGGTGCTGGATATTTTCAAATTGTATCTAGTGCAGCTGATTTTAACAATAACT
ACTGTGTTCCTGGCAATAGTGTGTTCTGATTAGCGATGACCAATATTAAACTAAGCAAAG
ATATGACTTTATTTTCTAGTAGATAGAAATAAATAGCTATATCCATGTACTGTAGTTTTC
CTTCGGCATCAATGTTCATTGTAATGTTACTGATCATGCATTGGTGAGGTGGTCTGAATG
TTCTGACATTAACAGTTTTCCATGAAAACGTTTTATTGTGTTTTTAATTTATTTATTAAG
ATGGATTCTCAGATATTTATATTTTTATTTTATTTTTTTCTACCTTGAGGTCTTTTGACA
TGTGGAAAGTGAATTTGAATGAAAAATTTAAGCATTGTTTGCTTATTGTTCAAAGACATT
GTCAATAAAAGCATTTACGTTGAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               FOS_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               FOS_PIG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               620-738, - strand, RNAz p=0.570574
               

               
               859-1451, - strand, RNAz p=0.991669

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               620-738, - strand, RNAz p=0.570574
               

               
               859-1451, - strand, RNAz p=0.991669

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               259-515, gnl|bosTau2|chr10 (56878234-56878490)
               

               
               259-515, gnl|Hg17|chr14 (74816331-74816587)
               

               
               259-515, gnl|Mm7|chr12 (83476414-83476670)
               


               
               620-2064, gnl|bosTau2|chr10 (56879140-56880586)
               

               
               620-2064, gnl|Hg17|chr14 (74817238-74818681)
               

               
               620-2064, gnl|Mm7|chr12 (83477297-83478750)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               259-515, gnl|bosTau2|chr10 (56878234-56878490)
               

               
               259-515, gnl|Hg17|chr14 (74816331-74816587)
               

               
               259-515, gnl|Mm7|chr12 (83476414-83476670)
               


               
               620-2064, gnl|bosTau2|chr10 (56879140-56880586)
               

               
               620-2064, gnl|Hg17|chr14 (74817238-74818681)
               

               
               620-2064, gnl|Mm7|chr12 (83477297-83478750)

Expressed library(ies): 38 entry(ies)

More info

Expressed library(ies): 38 entry(ies)

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               gul (1.95347)
               

               
               bla (1.49217)
               

               
               sug (1.4002)
               

               
               pla (1.06938)
               

               
               lyg (0.931718)
               

               
               ret (0.643666)
               

               
               bfe (0.449573)
               

               
               fat (0.442282)
               

               
               aor (0.390549)
               

               
               tra (0.369276)
               

               
               sin (0.349895)
               

               
               sme (0.305437)
               

               
               lun (0.300978)
               

               
               liv (0.292569)
               

               
               csk (0.281492)
               

               
               cov (0.264306)
               

               
               eru (0.240096)
               

               
               pan (0.23596)
               

               
               jca (0.22792)
               

               
               tes (0.207814)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               eli (0.151814)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               clu (0.119646)
               

               
               eje (0.0988338)

Expressed library(ies): 38 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (1.95347)
               

               
               bla (1.49217)
               

               
               sug (1.4002)
               

               
               pla (1.06938)
               

               
               lyg (0.931718)
               

               
               ret (0.643666)
               

               
               bfe (0.449573)
               

               
               fat (0.442282)
               

               
               aor (0.390549)
               

               
               tra (0.369276)
               

               
               sin (0.349895)
               

               
               sme (0.305437)
               

               
               lun (0.300978)
               

               
               liv (0.292569)
               

               
               csk (0.281492)
               

               
               cov (0.264306)
               

               
               eru (0.240096)
               

               
               pan (0.23596)
               

               
               jca (0.22792)
               

               
               tes (0.207814)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               eli (0.151814)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               clu (0.119646)
               

               
               eje (0.0988338)

	620-738, - strand, RNAz p=0.570574
	859-1451, - strand, RNAz p=0.991669

	259-515, gnl\|bosTau2\|chr10 (56878234-56878490)
	259-515, gnl\|Hg17\|chr14 (74816331-74816587)
	259-515, gnl\|Mm7\|chr12 (83476414-83476670)

	620-2064, gnl\|bosTau2\|chr10 (56879140-56880586)
	620-2064, gnl\|Hg17\|chr14 (74817238-74818681)
	620-2064, gnl\|Mm7\|chr12 (83477297-83478750)

	gul (1.95347)
	bla (1.49217)
	sug (1.4002)
	pla (1.06938)
	lyg (0.931718)
	ret (0.643666)
	bfe (0.449573)
	fat (0.442282)
	aor (0.390549)
	tra (0.369276)
	sin (0.349895)
	sme (0.305437)
	lun (0.300978)
	liv (0.292569)
	csk (0.281492)
	cov (0.264306)
	eru (0.240096)
	pan (0.23596)
	jca (0.22792)
	tes (0.207814)
	cmu (0.186393)
	nep (0.183925)
	sto (0.179824)
	fbs (0.175346)
	duo (0.172801)
	cje (0.165235)
	cki (0.165235)
	eli (0.151814)
	isp (0.150376)
	ski (0.146735)
	lin (0.145603)
	pty (0.142714)
	cst (0.140036)
	ute (0.132784)
	ese (0.126502)
	eep (0.122564)
	clu (0.119646)
	eje (0.0988338)