Non-Coding RNA Search

Ss1.1-Mixn-0031h22.5

Sequence:


               
               GTTGAAAGTTCAAATGAAGAAAATTTTCAACTTTTAGATATACAGGCACCATCTATTTGT
GATAATCAAGAAGTTCTTGAGGAGAGACGGTTGGAGATGGCTAGGCTGCAGCTAGCATAC
ATTTGTGCTCAACATCAGTTAATTCACTTGAAAGCAAGTAATGTGAGCATGAAGTCAAGT
ATAAAATGGGCAGAGGAAAATCTTCATAACCTCACTAGCAAGGAACTTGGCAAAGATAAT
TTGGATGCTAAAATTTCTAGCTTGAATAGTGAGATTCTGAAACTTGAAGAACAGATCGCT
CAGATAAAAGACAAAAGTTTGCCTGCTGTGATAAAAGAGAATGCCCAGTTATTGAATATG
CCAGTTGTAAAGGGAGATTTTGATTTGCAGATTGCTAAACAAGACTATTATACAGCAAGA
CAAGAGTTAGTTTTAAATCAGTTGATAAAGCAAAAGGCATCATTTGAACTTTTACAATTA
TCATATGAAATTGAATTGAGAAAGCATTGGGACATACATCGTCAACTTGAAAACTTGGTT
CAAGAACTTAGTCAGAGTAATTTGATGCTCCATCAGCGATTAGAAATGCTAACGGACCCA
TCAGTATCTCAGCAAATAAATCCAAGAAATACCATTGATACCAAGGATTATTCTGCTCAT
AGGCTCTACCAGCTTTTAGAAGGAGAGAATAAGAAAAAAGAACTGTTTATAACCCATGGA
AACCTGGAGGAAGTGGCTGAGAAATTAAAACAGGACGTTTCTTTAGTACAAGAGCAGCTG
GCAGTATCTGCCCAAGAACATTCCTTCTTTCTGTCCAAATTAAATAATGATGTAGACATG
CTTTGTGATGCTTTGTATCAAGGAGGAAATCAGCTTTTGCTTAGTGATCAGGAATTAACA
GAGCAATTTCATCAAGTTGAATCTCAACTAAATAAGTTAAATCATCTCCTTACTGATATT
CTTGCTGACGTGAAGACAAAAAGAAAAATTTTGGCATCTAATAAACTGCATCAAATGGAA
AGAGAATTATATGTATATTTTTTTAAAGATGAAGATTATCTGAAAGATATTGTGGAGAAT
TTAGAAAACCAGTCGCAGATAAAGGCTGTTGGTCTTGAAGATTGAAAATTACTAAAAACG
AAATCTTACTGCATATGCTGTATTTTAATGTTTTATGTATCAGGAGAATATAGCTAATAA
ACACTACAAAAATTTTTAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGAAAGTTCAAATGAAGAAAATTTTCAACTTTTAGATATACAGGCACCATCTATTTGT
GATAATCAAGAAGTTCTTGAGGAGAGACGGTTGGAGATGGCTAGGCTGCAGCTAGCATAC
ATTTGTGCTCAACATCAGTTAATTCACTTGAAAGCAAGTAATGTGAGCATGAAGTCAAGT
ATAAAATGGGCAGAGGAAAATCTTCATAACCTCACTAGCAAGGAACTTGGCAAAGATAAT
TTGGATGCTAAAATTTCTAGCTTGAATAGTGAGATTCTGAAACTTGAAGAACAGATCGCT
CAGATAAAAGACAAAAGTTTGCCTGCTGTGATAAAAGAGAATGCCCAGTTATTGAATATG
CCAGTTGTAAAGGGAGATTTTGATTTGCAGATTGCTAAACAAGACTATTATACAGCAAGA
CAAGAGTTAGTTTTAAATCAGTTGATAAAGCAAAAGGCATCATTTGAACTTTTACAATTA
TCATATGAAATTGAATTGAGAAAGCATTGGGACATACATCGTCAACTTGAAAACTTGGTT
CAAGAACTTAGTCAGAGTAATTTGATGCTCCATCAGCGATTAGAAATGCTAACGGACCCA
TCAGTATCTCAGCAAATAAATCCAAGAAATACCATTGATACCAAGGATTATTCTGCTCAT
AGGCTCTACCAGCTTTTAGAAGGAGAGAATAAGAAAAAAGAACTGTTTATAACCCATGGA
AACCTGGAGGAAGTGGCTGAGAAATTAAAACAGGACGTTTCTTTAGTACAAGAGCAGCTG
GCAGTATCTGCCCAAGAACATTCCTTCTTTCTGTCCAAATTAAATAATGATGTAGACATG
CTTTGTGATGCTTTGTATCAAGGAGGAAATCAGCTTTTGCTTAGTGATCAGGAATTAACA
GAGCAATTTCATCAAGTTGAATCTCAACTAAATAAGTTAAATCATCTCCTTACTGATATT
CTTGCTGACGTGAAGACAAAAAGAAAAATTTTGGCATCTAATAAACTGCATCAAATGGAA
AGAGAATTATATGTATATTTTTTTAAAGATGAAGATTATCTGAAAGATATTGTGGAGAAT
TTAGAAAACCAGTCGCAGATAAAGGCTGTTGGTCTTGAAGATTGAAAATTACTAAAAACG
AAATCTTACTGCATATGCTGTATTTTAATGTTTTATGTATCAGGAGAATATAGCTAATAA
ACACTACAAAAATTTTTAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|13177751|gb|AAH03648.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13177751|gb|AAH03648.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               106-886, gnl|bosTau2|chr9 (42305-41527)
               

               
               106-886, gnl|Hg17|chr4 (2209112-2205191)
               

               
               106-886, gnl|Mm7|chr5 (33230077-33226084)
               


               
               892-1200, gnl|bosTau2|chr9 (41419-41106)
               

               
               892-1200, gnl|Hg17|chr4 (2201118-2200835)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               106-886, gnl|bosTau2|chr9 (42305-41527)
               

               
               106-886, gnl|Hg17|chr4 (2209112-2205191)
               

               
               106-886, gnl|Mm7|chr5 (33230077-33226084)
               


               
               892-1200, gnl|bosTau2|chr9 (41419-41106)
               

               
               892-1200, gnl|Hg17|chr4 (2201118-2200835)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               bfe (0.449573)
               

               
               tes (0.415628)
               

               
               thg (0.253582)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               ctl (0.153069)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               ova (0.129132)
               

               
               spc (0.113366)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.449573)
               

               
               tes (0.415628)
               

               
               thg (0.253582)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               ctl (0.153069)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               ova (0.129132)
               

               
               spc (0.113366)

	106-886, gnl\|bosTau2\|chr9 (42305-41527)
	106-886, gnl\|Hg17\|chr4 (2209112-2205191)
	106-886, gnl\|Mm7\|chr5 (33230077-33226084)

	892-1200, gnl\|bosTau2\|chr9 (41419-41106)
	892-1200, gnl\|Hg17\|chr4 (2201118-2200835)

	bfe (0.449573)
	tes (0.415628)
	thg (0.253582)
	aor (0.195274)
	cmu (0.186393)
	gul (0.177588)
	ctl (0.153069)
	lin (0.145603)
	spl (0.143184)
	hlv (0.139256)
	ova (0.129132)
	spc (0.113366)