Non-Coding RNA Search

Ss1.1-Mixn-0031i17.5

Sequence:


               
               CGCGGCCGCCCGGCGCCCCGAGCAGCCCGAGTCGGGGCGCACAGCCGGGGCGCAGCCTGC
GCCCCCCGCCGCGACTGACATGATGTTTCCACAAAGCAGGCATTCGGGCTCGTCGCACCT
ACCCCAGCAACTCAAATTCACCACCTCGGACTCCTGCGACCGCATCAAAGATGAGTTTCA
GCTCCTGCAGGCTCAGTACCACAGTCTGAAACTCGAATGTGACAAGCTGGCCAGCGAGAA
GTCAGAGATGCAGCGTCATTATGTGATGTACTATGAAATGTCCTACGGCTTGAACATCGA
GATGCACAAGCAGGCTGAGATCGTCAAGAGGCTGAATGGGATATGTGCCCAGGTCCTGCC
CTACCTTTCCCAAGAGCACCAGCAGCAGGTCTTGGGAGCCATCGAGAGGGCTAAGCAGGT
CACTGCACCTGAGCTGAACTCCATCATCCGACAGCAGCTCCAAGCCCACCAGCTGTCCCA
GCTGCAGGCTCTGGCCCTGCCTCTGACCCCACTGCCTGTGGGGCTGCAGCCCCCTTCGCT
GCCAGCGGTTAGCGCAGGCACCGGTCTCCTCTCGCTGTCGGCACTGGGCTCCCAAGCCCA
CCTCTCCAAGGAAGACAAGAATGGGCATGATGGTGACACCCACCAGGAGGACGACGGCGA
GAAGTCGGATTAGTGGGGAGCTGGGATGGGGTGGGTGGGTGGGGACAAAGGGAGACAGAC
ACAGAGTGAGAGGAATGTTCAGCGCAAGACACAGTATAGCTCGGGTTATTGGCTAAACTC
TGGTAGTATTTATGGTAGCCGCCTGCTGGGGCCCTCGCCCTGCTTGTGTGCCACCCCCTG
GCTTTGCTCCTACACCCAGCTCCCAGCTTCCCTCCTCCCCTGCAGCCTGAATGGGTGCAT
ACCTGCTCATACCACAGATGAGGCAAGCTGAGGCCTGGAGGCGCCCGCGGGAGGCCGGGT
CAGAGGGAGCAAAACCTCAAGAGGTCCAACACCCCCTGCACTTCCCCGATTCTTCGCACA
TGTGTAACTGACAGTCTGCCCACTGGGCCCTTCCAGGCACACCTGGCGTCCCACCCTGGC
ACTGCATGCAAACACAATGCTAGCTGCCCCTCCCCGCCCTGGGCGCCCCAGTCTCCCCCT
CCCACCCACTCACCCTCTGCTAGTTCCCAACACCCACTTGGGCCTCTCCCCTTGACAACA
AAAGAAAGAGGGGCCAGGAGAAGCCAGCTTAGCCCGGACAGCAGGGTGGGGTGGGCAACC
CAGATTTCCCTTTCTCCCCTTCCCGAATAAAGATGAGGGTACTCAAGTTGTCTTGGTTTT
TATTTTATTTTTTTTCCCTTTTTCCAGTATACTAGCTTGTCTTTTAAAAAAAGGGATATT
AAAAAAAAAAAGACATAAAAATGTTAAAAAAAAAAAAAAAGCAACACCCACACCTGTGTC
TGTATATAGCCTTTTTAGACTGTCAGCTTTTGTTGTGTTCAGTCGTTTGATCTCTATGAA
GAGAAGTGAAAATGCTGTATCGAGGGTGGGCTTAGCTGTGCCTTTCAAATAAAGATGTGA
GAAGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCGGCCGCCCGGCGCCCCGAGCAGCCCGAGTCGGGGCGCACAGCCGGGGCGCAGCCTGC
GCCCCCCGCCGCGACTGACATGATGTTTCCACAAAGCAGGCATTCGGGCTCGTCGCACCT
ACCCCAGCAACTCAAATTCACCACCTCGGACTCCTGCGACCGCATCAAAGATGAGTTTCA
GCTCCTGCAGGCTCAGTACCACAGTCTGAAACTCGAATGTGACAAGCTGGCCAGCGAGAA
GTCAGAGATGCAGCGTCATTATGTGATGTACTATGAAATGTCCTACGGCTTGAACATCGA
GATGCACAAGCAGGCTGAGATCGTCAAGAGGCTGAATGGGATATGTGCCCAGGTCCTGCC
CTACCTTTCCCAAGAGCACCAGCAGCAGGTCTTGGGAGCCATCGAGAGGGCTAAGCAGGT
CACTGCACCTGAGCTGAACTCCATCATCCGACAGCAGCTCCAAGCCCACCAGCTGTCCCA
GCTGCAGGCTCTGGCCCTGCCTCTGACCCCACTGCCTGTGGGGCTGCAGCCCCCTTCGCT
GCCAGCGGTTAGCGCAGGCACCGGTCTCCTCTCGCTGTCGGCACTGGGCTCCCAAGCCCA
CCTCTCCAAGGAAGACAAGAATGGGCATGATGGTGACACCCACCAGGAGGACGACGGCGA
GAAGTCGGATTAGTGGGGAGCTGGGATGGGGTGGGTGGGTGGGGACAAAGGGAGACAGAC
ACAGAGTGAGAGGAATGTTCAGCGCAAGACACAGTATAGCTCGGGTTATTGGCTAAACTC
TGGTAGTATTTATGGTAGCCGCCTGCTGGGGCCCTCGCCCTGCTTGTGTGCCACCCCCTG
GCTTTGCTCCTACACCCAGCTCCCAGCTTCCCTCCTCCCCTGCAGCCTGAATGGGTGCAT
ACCTGCTCATACCACAGATGAGGCAAGCTGAGGCCTGGAGGCGCCCGCGGGAGGCCGGGT
CAGAGGGAGCAAAACCTCAAGAGGTCCAACACCCCCTGCACTTCCCCGATTCTTCGCACA
TGTGTAACTGACAGTCTGCCCACTGGGCCCTTCCAGGCACACCTGGCGTCCCACCCTGGC
ACTGCATGCAAACACAATGCTAGCTGCCCCTCCCCGCCCTGGGCGCCCCAGTCTCCCCCT
CCCACCCACTCACCCTCTGCTAGTTCCCAACACCCACTTGGGCCTCTCCCCTTGACAACA
AAAGAAAGAGGGGCCAGGAGAAGCCAGCTTAGCCCGGACAGCAGGGTGGGGTGGGCAACC
CAGATTTCCCTTTCTCCCCTTCCCGAATAAAGATGAGGGTACTCAAGTTGTCTTGGTTTT
TATTTTATTTTTTTTCCCTTTTTCCAGTATACTAGCTTGTCTTTTAAAAAAAGGGATATT
AAAAAAAAAAAGACATAAAAATGTTAAAAAAAAAAAAAAAGCAACACCCACACCTGTGTC
TGTATATAGCCTTTTTAGACTGTCAGCTTTTGTTGTGTTCAGTCGTTTGATCTCTATGAA
GAGAAGTGAAAATGCTGTATCGAGGGTGGGCTTAGCTGTGCCTTTCAAATAAAGATGTGA
GAAGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               GRG_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               GRG_HUMAN

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               401-590, - strand, RNAz p=0.978851
               

               
               849-964, - strand, RNAz p=0.989371

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               401-590, - strand, RNAz p=0.978851
               

               
               849-964, - strand, RNAz p=0.989371

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               275-762, gnl|bosTau2|chr10 (30769860-30770343)
               

               
               275-762, gnl|Hg17|chr19 (3007348-3004731)
               

               
               275-762, gnl|Mm7|chr10 (81359165-81360228)
               


               
               770-1295, gnl|bosTau2|chr10 (30771583-30772113)
               

               
               770-1295, gnl|Hg17|chr19 (3004717-3004168)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               275-762, gnl|bosTau2|chr10 (30769860-30770343)
               

               
               275-762, gnl|Hg17|chr19 (3007348-3004731)
               

               
               275-762, gnl|Mm7|chr10 (81359165-81360228)
               


               
               770-1295, gnl|bosTau2|chr10 (30771583-30772113)
               

               
               770-1295, gnl|Hg17|chr19 (3004717-3004168)

Expressed library(ies): 44 entry(ies)

More info

Expressed library(ies): 44 entry(ies)

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               cbr (2.55951)
               

               
               cbe (1.19617)
               

               
               ece (0.917221)
               

               
               pty (0.713572)
               

               
               fbs (0.701385)
               

               
               fhi (0.508733)
               

               
               nco (0.485201)
               

               
               cly (0.482567)
               

               
               lnt (0.426925)
               

               
               mas (0.42061)
               

               
               eje (0.395335)
               

               
               eru (0.360144)
               

               
               ebs (0.354904)
               

               
               fty (0.351679)
               

               
               ton (0.351)
               

               
               ecc (0.345105)
               

               
               cut (0.339847)
               

               
               csp (0.322373)
               

               
               bfe (0.299715)
               

               
               hyp (0.285673)
               

               
               thg (0.253582)
               

               
               eep (0.245128)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 44 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (2.55951)
               

               
               cbe (1.19617)
               

               
               ece (0.917221)
               

               
               pty (0.713572)
               

               
               fbs (0.701385)
               

               
               fhi (0.508733)
               

               
               nco (0.485201)
               

               
               cly (0.482567)
               

               
               lnt (0.426925)
               

               
               mas (0.42061)
               

               
               eje (0.395335)
               

               
               eru (0.360144)
               

               
               ebs (0.354904)
               

               
               fty (0.351679)
               

               
               ton (0.351)
               

               
               ecc (0.345105)
               

               
               cut (0.339847)
               

               
               csp (0.322373)
               

               
               bfe (0.299715)
               

               
               hyp (0.285673)
               

               
               thg (0.253582)
               

               
               eep (0.245128)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	401-590, - strand, RNAz p=0.978851
	849-964, - strand, RNAz p=0.989371

	275-762, gnl\|bosTau2\|chr10 (30769860-30770343)
	275-762, gnl\|Hg17\|chr19 (3007348-3004731)
	275-762, gnl\|Mm7\|chr10 (81359165-81360228)

	770-1295, gnl\|bosTau2\|chr10 (30771583-30772113)
	770-1295, gnl\|Hg17\|chr19 (3004717-3004168)

	cbr (2.55951)
	cbe (1.19617)
	ece (0.917221)
	pty (0.713572)
	fbs (0.701385)
	fhi (0.508733)
	nco (0.485201)
	cly (0.482567)
	lnt (0.426925)
	mas (0.42061)
	eje (0.395335)
	eru (0.360144)
	ebs (0.354904)
	fty (0.351679)
	ton (0.351)
	ecc (0.345105)
	cut (0.339847)
	csp (0.322373)
	bfe (0.299715)
	hyp (0.285673)
	thg (0.253582)
	eep (0.245128)
	fcc (0.197785)
	nlu (0.191681)
	sag (0.182715)
	mcp (0.170648)
	eye (0.170503)
	fco (0.157208)
	cli (0.152812)
	cag (0.151194)
	ski (0.146735)
	csk (0.140746)
	cst (0.140036)
	ste (0.135208)
	pla (0.133672)
	nmm (0.132802)
	cov (0.132153)
	ova (0.129132)
	ese (0.126502)
	med (0.116252)
	jca (0.11396)
	spc (0.113366)
	jej (0.0989218)
	ldo (0.0970026)