Non-Coding RNA Search

Ss1.1-Mixn-0031k04.5

Sequence:


               
               GGATGGGGTGGGAAGGAAGGGAGGATCATTTTTGTTAAAATTTTGGGGCCTGATCGGGGA
AGTGGTGAAACAGAGGAGAGAACAACTAATGATGATTTGGTTCTGTGCCCAGAATATTTT
ATCCCTTCAAAAAATGTCATTGGCAGCCTAAATGAGGACTGTGAGAGACTTTAAAAGCTG
TGAATGCCTGAAACTCATAAGCCAAGGTGTTCCCTGCCTGAGCTTAATGCTGTTCCCAAC
AAAGGACTAAGCCGGTGAAGAAGTTACCAAAGCTGCCATTTGGGGGATGGAAACTCGTTG
AGGAGGAAAAATGTTCTTGGAGTGAATACACAGGCAGATCGTTCTGCCTTAGAGGTGCTA
ATTCTTGAAATTGACAAGGAGACCCTTTCTTTTCTACTTACGAAGTTACAGATATCAGCT
TGTCCATCCAAGCCACTGGCTGAGGTATTTGGGGAGGGGGCAGAGGGCAGTCTAGGAAGT
AGGAGAGTAGGGAAAGACAAGGGCCTGTGCTCTTAAGAGTGGAAAAACTCTTGAAGCCTC
TGTTTTTTGAACTTTGATCTCTGAAACCATTGGTGGCAGGGTTCAGTCACCGACAGCACA
AGTTCCCTGAATCACTTCAAGAGTAGAACAGTTTCAAAAGCCCTGGTCTCAGGAGAAGAT
TAAATTTTCATACTGGGGCAGCGGTTTACTTTAAAACAAAACAAAACAAAAGTTTGGGTT
GTTTTTAATCCTAAGAATTAACCAATACCCAAAATGCTGTCTTGAATCATGAGATCCATC
AGTTCTTGACATCGTCTAGACCTGCATCTAGAACGCCATTGTAAAATCTTCTTAGGCATG
TGTTAGGGTTCTGTGACAACTTTGTTTAAATGTAAACTTCATACCAACACTGTCAGTTTT
TGTCTTAATAAAACTATAGATTTATAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATGGGGTGGGAAGGAAGGGAGGATCATTTTTGTTAAAATTTTGGGGCCTGATCGGGGA
AGTGGTGAAACAGAGGAGAGAACAACTAATGATGATTTGGTTCTGTGCCCAGAATATTTT
ATCCCTTCAAAAAATGTCATTGGCAGCCTAAATGAGGACTGTGAGAGACTTTAAAAGCTG
TGAATGCCTGAAACTCATAAGCCAAGGTGTTCCCTGCCTGAGCTTAATGCTGTTCCCAAC
AAAGGACTAAGCCGGTGAAGAAGTTACCAAAGCTGCCATTTGGGGGATGGAAACTCGTTG
AGGAGGAAAAATGTTCTTGGAGTGAATACACAGGCAGATCGTTCTGCCTTAGAGGTGCTA
ATTCTTGAAATTGACAAGGAGACCCTTTCTTTTCTACTTACGAAGTTACAGATATCAGCT
TGTCCATCCAAGCCACTGGCTGAGGTATTTGGGGAGGGGGCAGAGGGCAGTCTAGGAAGT
AGGAGAGTAGGGAAAGACAAGGGCCTGTGCTCTTAAGAGTGGAAAAACTCTTGAAGCCTC
TGTTTTTTGAACTTTGATCTCTGAAACCATTGGTGGCAGGGTTCAGTCACCGACAGCACA
AGTTCCCTGAATCACTTCAAGAGTAGAACAGTTTCAAAAGCCCTGGTCTCAGGAGAAGAT
TAAATTTTCATACTGGGGCAGCGGTTTACTTTAAAACAAAACAAAACAAAAGTTTGGGTT
GTTTTTAATCCTAAGAATTAACCAATACCCAAAATGCTGTCTTGAATCATGAGATCCATC
AGTTCTTGACATCGTCTAGACCTGCATCTAGAACGCCATTGTAAAATCTTCTTAGGCATG
TGTTAGGGTTCTGTGACAACTTTGTTTAAATGTAAACTTCATACCAACACTGTCAGTTTT
TGTCTTAATAAAACTATAGATTTATAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-476, gnl|bosTau2|chr14 (38501904-38501441)
               

               
               1-476, gnl|Hg17|chrX (62301578-62301110)
               

               
               1-476, gnl|Mm7|chr8 (15852839-15853351)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-476, gnl|bosTau2|chr14 (38501904-38501441)
               

               
               1-476, gnl|Hg17|chrX (62301578-62301110)
               

               
               1-476, gnl|Mm7|chr8 (15852839-15853351)

Expressed library(ies): 18 entry(ies)

More info

Expressed library(ies): 18 entry(ies)

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               pla (0.401016)
               

               
               fcc (0.39557)
               

               
               nlu (0.383362)
               

               
               tbr (0.308356)
               

               
               thg (0.253582)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               csp (0.161186)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.401016)
               

               
               fcc (0.39557)
               

               
               nlu (0.383362)
               

               
               tbr (0.308356)
               

               
               thg (0.253582)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               csp (0.161186)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)

	1-476, gnl\|bosTau2\|chr14 (38501904-38501441)
	1-476, gnl\|Hg17\|chrX (62301578-62301110)
	1-476, gnl\|Mm7\|chr8 (15852839-15853351)

	pla (0.401016)
	fcc (0.39557)
	nlu (0.383362)
	tbr (0.308356)
	thg (0.253582)
	ecc (0.23007)
	nms (0.213858)
	csp (0.161186)
	bfe (0.149858)
	spl (0.143184)
	hyp (0.142837)
	lnt (0.142308)
	hlv (0.139256)
	ova (0.129132)
	sug (0.127291)
	ese (0.126502)
	eru (0.120048)
	eje (0.0988338)