Ss1.1-Mixn-0031k14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCAAGCCACATGGCCGCGGCTGTGAGCGCTGGCCACTGCGCAAACATCGGGAGAACGTG ACTGACGATGCCACCAGGACCTTGGGGAAAGGGAGCCTCCCCCCTGGGCCAGTCCCAGAG GGCCTGATCCGCATCTACAGCATGAGGTTCTGCCCCTATGCGCACAGGACCCGTCTGGTC CTTAGGGCCAAAGGCATCAGACATGAAGTTGTCAACATTAACCTGAGAAACAAGCCTGAA TGGTACTTTACAAAGCACCCTTTTGGCCAAATTCCTGTCCTGGAGAACAGCAAATGTCAA CTGATCTACGAATCTGTCATTGCTTGCGAGTACCTGGATGATGCTTATCCTGGAAGGAAG CTATATCCATATGACCCTTATGAGCGAGCTCGCCAAAAGATGCTATTGGAGCTATTCTAT AAGGTCCCACATTTGACAAAGGAGTGTCTGGTAGCCTTGAGATGTGGGAGAGAATGCGCT GATCTGAAGCTAGCCCTGCGTCAGGAGTTCTGCAACCTGGAAGAGATTCTTGGCTATCAG AACACCATCTTCTTTGGTGGAGACTGTATATCCATGATTGATTACCTCTTTTGGCCCTGG TTTGAGCGGCTGGATGTATATGGAATAGCTGACTGTGTGAACCACACCCCCGCACTCCGT CTCTGGATCGCAGCCATGAAGCAGGACCCCACAGTCTGTGCTCTTCTCATAGATAAGAAC ATCTTCCTGGGCTTCCTGAATCTCTATTTTCAGAACAACCCTGATGCCTTTGACTATGGA CTAAATTGCTGAAGCTCACGATCCATCTCTTCACCATCCAGAATTCCCAAGCATGCCGTG ATTCTGCAGCAGCCCTTGTTTTGGTAGGGCAGTCTATCTCTGTTCATTTTCTTAGAGGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCAAGCCACATGGCCGCGGCTGTGAGCGCTGGCCACTGCGCAAACATCGGGAGAACGTG ACTGACGATGCCACCAGGACCTTGGGGAAAGGGAGCCTCCCCCCTGGGCCAGTCCCAGAG GGCCTGATCCGCATCTACAGCATGAGGTTCTGCCCCTATGCGCACAGGACCCGTCTGGTC CTTAGGGCCAAAGGCATCAGACATGAAGTTGTCAACATTAACCTGAGAAACAAGCCTGAA TGGTACTTTACAAAGCACCCTTTTGGCCAAATTCCTGTCCTGGAGAACAGCAAATGTCAA CTGATCTACGAATCTGTCATTGCTTGCGAGTACCTGGATGATGCTTATCCTGGAAGGAAG CTATATCCATATGACCCTTATGAGCGAGCTCGCCAAAAGATGCTATTGGAGCTATTCTAT AAGGTCCCACATTTGACAAAGGAGTGTCTGGTAGCCTTGAGATGTGGGAGAGAATGCGCT GATCTGAAGCTAGCCCTGCGTCAGGAGTTCTGCAACCTGGAAGAGATTCTTGGCTATCAG AACACCATCTTCTTTGGTGGAGACTGTATATCCATGATTGATTACCTCTTTTGGCCCTGG TTTGAGCGGCTGGATGTATATGGAATAGCTGACTGTGTGAACCACACCCCCGCACTCCGT CTCTGGATCGCAGCCATGAAGCAGGACCCCACAGTCTGTGCTCTTCTCATAGATAAGAAC ATCTTCCTGGGCTTCCTGAATCTCTATTTTCAGAACAACCCTGATGCCTTTGACTATGGA CTAAATTGCTGAAGCTCACGATCCATCTCTTCACCATCCAGAATTCCCAAGCATGCCGTG ATTCTGCAGCAGCCCTTGTTTTGGTAGGGCAGTCTATCTCTGTTCATTTTCTTAGAGGCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 672-791, - strand, RNAz p=0.576902 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 672-791, - strand, RNAz p=0.576902 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 196-425, gnl|bosTau2|chr26 (17072664-17072435) | |
| 196-425, gnl|Hg17|chr10 (106027637-106027866) | |
| 196-425, gnl|Mm7|chr19 (47775322-47775551) | |
| 524-632, gnl|bosTau2|chr26 (17060447-17060339) | |
| 524-632, gnl|canFam2|chr28 (19606800-19606884) | |
| 524-632, gnl|dasNov1|scaffold_3478 (50552-50468) | |
| 524-632, gnl|echTel1|scaffold_255181 (12995-12911) | |
| 524-632, gnl|hg17|chr10 (106047325-106047409) | |
| 524-632, gnl|Hg17|chr10 (106047324-106047432) | |
| 524-632, gnl|mm7|chr19 (47785152-47785236) | |
| 524-632, gnl|Mm7|chr19 (47785151-47785259) | |
| 524-632, gnl|oryCun1|scaffold_198587 (160821-160737) | |
| 524-632, gnl|panTro1|chr8 (107849597-107849681) | |
| 524-632, gnl|rheMac2|chr9 (104000870-104000954) | |
| 524-632, gnl|rn3|chr1 (253538289-253538373) | |
| 633-898, gnl|bosTau2|chr26 (17058934-17058675) | |
| 633-898, gnl|canFam2|chr28 (19607929-19608352) | |
| 633-898, gnl|dasNov1|scaffold_3478 (48607-48164) | |
| 633-898, gnl|echTel1|scaffold_92735 (1201-737) | |
| 633-898, gnl|hg17|chr10 (106048767-106049215) | |
| 633-898, gnl|Hg17|chr10 (106048876-106049137) | |
| 633-898, gnl|loxAfr1|scaffold_2043 (73403-73831) | |
| 633-898, gnl|mm7|chr19 (47786421-47786832) | |
| 633-898, gnl|Mm7|chr19 (47786515-47786775) | |
| 633-898, gnl|oryCun1|scaffold_198587 (159420-158975) | |
| 633-898, gnl|panTro1|chr8 (107851041-107851486) | |
| 633-898, gnl|rheMac2|chr9 (104002328-104002773) | |
| 633-898, gnl|rn3|chr1 (253539449-253539881) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 196-425, gnl|bosTau2|chr26 (17072664-17072435) | |
| 196-425, gnl|Hg17|chr10 (106027637-106027866) | |
| 196-425, gnl|Mm7|chr19 (47775322-47775551) | |
| 524-632, gnl|bosTau2|chr26 (17060447-17060339) | |
| 524-632, gnl|canFam2|chr28 (19606800-19606884) | |
| 524-632, gnl|dasNov1|scaffold_3478 (50552-50468) | |
| 524-632, gnl|echTel1|scaffold_255181 (12995-12911) | |
| 524-632, gnl|hg17|chr10 (106047325-106047409) | |
| 524-632, gnl|Hg17|chr10 (106047324-106047432) | |
| 524-632, gnl|mm7|chr19 (47785152-47785236) | |
| 524-632, gnl|Mm7|chr19 (47785151-47785259) | |
| 524-632, gnl|oryCun1|scaffold_198587 (160821-160737) | |
| 524-632, gnl|panTro1|chr8 (107849597-107849681) | |
| 524-632, gnl|rheMac2|chr9 (104000870-104000954) | |
| 524-632, gnl|rn3|chr1 (253538289-253538373) | |
| 633-898, gnl|bosTau2|chr26 (17058934-17058675) | |
| 633-898, gnl|canFam2|chr28 (19607929-19608352) | |
| 633-898, gnl|dasNov1|scaffold_3478 (48607-48164) | |
| 633-898, gnl|echTel1|scaffold_92735 (1201-737) | |
| 633-898, gnl|hg17|chr10 (106048767-106049215) | |
| 633-898, gnl|Hg17|chr10 (106048876-106049137) | |
| 633-898, gnl|loxAfr1|scaffold_2043 (73403-73831) | |
| 633-898, gnl|mm7|chr19 (47786421-47786832) | |
| 633-898, gnl|Mm7|chr19 (47786515-47786775) | |
| 633-898, gnl|oryCun1|scaffold_198587 (159420-158975) | |
| 633-898, gnl|panTro1|chr8 (107851041-107851486) | |
| 633-898, gnl|rheMac2|chr9 (104002328-104002773) | |
| 633-898, gnl|rn3|chr1 (253539449-253539881) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (0.195008) | |
| jca (0.11396) |