Ss1.1-Mixn-0031l17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGCGACGGGCTTCGCCCCGGCCAGCCGGCCCTCCTTTTAACCGCCCGCCATGGCGTCGG AGGGGCCGCGGGAGCCCGCGGGCGAGGGCATCAAGTTGTCAGCAGATGTCAAACCGTTTG TCCCCAAATTTGCTGGACTCAGTGTGGCATGGTCAGAATCTTCAGAAACACGGGTTTTCC CCAGCTGTGCAGCCACGACTTACTATCCATGTGTCCAGGAACTAGCAGTGCCTGAACAGA AACTCTATACTGAAGGAATGGCTTTTGGAGCTTCAACTTTTCCACCTCAGTATTTATCTT CTGAGATCACTCTTCATCCATACGCCTATCCTCCTTACACCCTGGAGTCCTCACAAAATG TATGCCCTGCGCCTGGCTCCCAGTATGATTACAACCAACCCACTTGTTTTGGAGGTTTTC AAACAGTGAAGCCACGAAATGAGCACATAGTGAAGCCACGAAACGAGCACATGTACCCTC TCCCACAAGACATGAAAGCTCTGTTTAAGAAGAAAACCTATGATGAGCAAAGGTTTGACA GTAAGAAGACTGATGGACCTATATCATCTGATTTAAAATCAGTTAAAGGTTCACATCCTA TGTCCATTCATGCCGAGAGTAGTTTGAAATCAGATGGTTATTATAAACGAACAGAGAGAA AATCCAGAATCATTGAAAAAAGTGGATCTGCCTCCAAACCTGAGTTTGAATTTACCAGGT TGGATTTTCCTGAACTGCAGGGTCCAGAGAGCAGGGAGATACCAGAGATACAAAAGCAGC CCAAGTGGGGGCCTTTACGCTCTGCCTCTACTGATGTTTCGCTTCTGAGAGAAGCGGGGA AACCTGCCGTGGCGTTACCAGAGGGTGAAATAGTGGTGAAAAATAATAATCCGACTGAGT CTGTAACTGATAATGCTGCTGCCAATCCCTCTTCAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGCGACGGGCTTCGCCCCGGCCAGCCGGCCCTCCTTTTAACCGCCCGCCATGGCGTCGG AGGGGCCGCGGGAGCCCGCGGGCGAGGGCATCAAGTTGTCAGCAGATGTCAAACCGTTTG TCCCCAAATTTGCTGGACTCAGTGTGGCATGGTCAGAATCTTCAGAAACACGGGTTTTCC CCAGCTGTGCAGCCACGACTTACTATCCATGTGTCCAGGAACTAGCAGTGCCTGAACAGA AACTCTATACTGAAGGAATGGCTTTTGGAGCTTCAACTTTTCCACCTCAGTATTTATCTT CTGAGATCACTCTTCATCCATACGCCTATCCTCCTTACACCCTGGAGTCCTCACAAAATG TATGCCCTGCGCCTGGCTCCCAGTATGATTACAACCAACCCACTTGTTTTGGAGGTTTTC AAACAGTGAAGCCACGAAATGAGCACATAGTGAAGCCACGAAACGAGCACATGTACCCTC TCCCACAAGACATGAAAGCTCTGTTTAAGAAGAAAACCTATGATGAGCAAAGGTTTGACA GTAAGAAGACTGATGGACCTATATCATCTGATTTAAAATCAGTTAAAGGTTCACATCCTA TGTCCATTCATGCCGAGAGTAGTTTGAAATCAGATGGTTATTATAAACGAACAGAGAGAA AATCCAGAATCATTGAAAAAAGTGGATCTGCCTCCAAACCTGAGTTTGAATTTACCAGGT TGGATTTTCCTGAACTGCAGGGTCCAGAGAGCAGGGAGATACCAGAGATACAAAAGCAGC CCAAGTGGGGGCCTTTACGCTCTGCCTCTACTGATGTTTCGCTTCTGAGAGAAGCGGGGA AACCTGCCGTGGCGTTACCAGAGGGTGAAATAGTGGTGAAAAATAATAATCCGACTGAGT CTGTAACTGATAATGCTGCTGCCAATCCCTCTTCAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 236-447, gnl|bosTau2|chr8 (52045104-52045315) | |
| 236-447, gnl|canFam2|chr1 (99989807-99990055) | |
| 236-447, gnl|canFam2|chr1 (99989812-99990057) | |
| 236-447, gnl|canFam2|chr1 (99990061-99989790) | |
| 236-447, gnl|dasNov1|scaffold_168210 (3604-3852) | |
| 236-447, gnl|dasNov1|scaffold_168210 (3609-3839) | |
| 236-447, gnl|dasNov1|scaffold_168210 (3858-3584) | |
| 236-447, gnl|echTel1|scaffold_298687 (8674-8433) | |
| 236-447, gnl|echTel1|scaffold_298687 (8662-8441) | |
| 236-447, gnl|echTel1|scaffold_322116 (36884-36610) | |
| 236-447, gnl|galGal2|chrUn (3279897-3280178) | |
| 236-447, gnl|hg17|chr18 (63608823-63609069) | |
| 236-447, gnl|hg17|chr7 (148412510-148412744) | |
| 236-447, gnl|hg17|chr9 (89169892-89170164) | |
| 236-447, gnl|Hg17|chr9 (89169896-89170107) | |
| 236-447, gnl|loxAfr1|scaffold_95919 (6135-6383) | |
| 236-447, gnl|loxAfr1|scaffold_95919 (6147-6385) | |
| 236-447, gnl|loxAfr1|scaffold_95919 (6389-6115) | |
| 236-447, gnl|mm7|chr13 (50688728-50688480) | |
| 236-447, gnl|mm7|chr13 (50688715-50688493) | |
| 236-447, gnl|mm7|chr13 (50688478-50688749) | |
| 236-447, gnl|Mm7|chr13 (50688478-50688689) | |
| 236-447, gnl|monDom2|scaffold_55 (1699823-1699547) | |
| 236-447, gnl|oryCun1|scaffold_207225 (4013-4358) | |
| 236-447, gnl|oryCun1|scaffold_207225 (4358-4013) | |
| 236-447, gnl|panTro1|chr11 (73303690-73303962) | |
| 236-447, gnl|panTro1|chr17 (60548007-60548253) | |
| 236-447, gnl|panTro1|chr6 (151277074-151277308) | |
| 236-447, gnl|rheMac2|chr15 (97831162-97831434) | |
| 236-447, gnl|rheMac2|chr18 (61357459-61357701) | |
| 236-447, gnl|rheMac2|chr3 (186600293-186600524) | |
| 236-447, gnl|rn3|chr17 (19419328-19419573) | |
| 236-447, gnl|rn3|chr17 (19419354-19419560) | |
| 236-447, gnl|rn3|chr17 (19419575-19419309) | |
| 627-864, gnl|bosTau2|chr8 (52046912-52047150) | |
| 627-864, gnl|canFam2|chr1 (99988050-99988248) | |
| 627-864, gnl|canFam2|chr1 (99988127-99988259) | |
| 627-864, gnl|dasNov1|scaffold_168210 (1721-1913) | |
| 627-864, gnl|dasNov1|scaffold_168210 (1786-1912) | |
| 627-864, gnl|echTel1|scaffold_298687 (9039-8870) | |
| 627-864, gnl|echTel1|scaffold_298687 (8974-8802) | |
| 627-864, gnl|hg17|chr18 (63608184-63608380) | |
| 627-864, gnl|hg17|chr7 (148411886-148412032) | |
| 627-864, gnl|Hg17|chr9 (89173121-89173356) | |
| 627-864, gnl|loxAfr1|scaffold_95919 (4205-4384) | |
| 627-864, gnl|loxAfr1|scaffold_95919 (4253-4394) | |
| 627-864, gnl|mm7|chr13 (50691175-50690991) | |
| 627-864, gnl|mm7|chr13 (50691112-50690980) | |
| 627-864, gnl|Mm7|chr13 (50690965-50691203) | |
| 627-864, gnl|oryCun1|scaffold_138552 (4677-4847) | |
| 627-864, gnl|oryCun1|scaffold_68890 (29-151) | |
| 627-864, gnl|panTro1|chr17 (60547368-60547564) | |
| 627-864, gnl|panTro1|chr6 (151276451-151276595) | |
| 627-864, gnl|rheMac2|chr18 (61356818-61357016) | |
| 627-864, gnl|rheMac2|chr3 (186599681-186599828) | |
| 627-864, gnl|rn3|chr17 (19416817-19417008) | |
| 627-864, gnl|rn3|chr17 (19416894-19417026) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 236-447, gnl|bosTau2|chr8 (52045104-52045315) | |
| 236-447, gnl|canFam2|chr1 (99989807-99990055) | |
| 236-447, gnl|canFam2|chr1 (99989812-99990057) | |
| 236-447, gnl|canFam2|chr1 (99990061-99989790) | |
| 236-447, gnl|dasNov1|scaffold_168210 (3604-3852) | |
| 236-447, gnl|dasNov1|scaffold_168210 (3609-3839) | |
| 236-447, gnl|dasNov1|scaffold_168210 (3858-3584) | |
| 236-447, gnl|echTel1|scaffold_298687 (8674-8433) | |
| 236-447, gnl|echTel1|scaffold_298687 (8662-8441) | |
| 236-447, gnl|echTel1|scaffold_322116 (36884-36610) | |
| 236-447, gnl|galGal2|chrUn (3279897-3280178) | |
| 236-447, gnl|hg17|chr18 (63608823-63609069) | |
| 236-447, gnl|hg17|chr7 (148412510-148412744) | |
| 236-447, gnl|hg17|chr9 (89169892-89170164) | |
| 236-447, gnl|Hg17|chr9 (89169896-89170107) | |
| 236-447, gnl|loxAfr1|scaffold_95919 (6135-6383) | |
| 236-447, gnl|loxAfr1|scaffold_95919 (6147-6385) | |
| 236-447, gnl|loxAfr1|scaffold_95919 (6389-6115) | |
| 236-447, gnl|mm7|chr13 (50688728-50688480) | |
| 236-447, gnl|mm7|chr13 (50688715-50688493) | |
| 236-447, gnl|mm7|chr13 (50688478-50688749) | |
| 236-447, gnl|Mm7|chr13 (50688478-50688689) | |
| 236-447, gnl|monDom2|scaffold_55 (1699823-1699547) | |
| 236-447, gnl|oryCun1|scaffold_207225 (4013-4358) | |
| 236-447, gnl|oryCun1|scaffold_207225 (4358-4013) | |
| 236-447, gnl|panTro1|chr11 (73303690-73303962) | |
| 236-447, gnl|panTro1|chr17 (60548007-60548253) | |
| 236-447, gnl|panTro1|chr6 (151277074-151277308) | |
| 236-447, gnl|rheMac2|chr15 (97831162-97831434) | |
| 236-447, gnl|rheMac2|chr18 (61357459-61357701) | |
| 236-447, gnl|rheMac2|chr3 (186600293-186600524) | |
| 236-447, gnl|rn3|chr17 (19419328-19419573) | |
| 236-447, gnl|rn3|chr17 (19419354-19419560) | |
| 236-447, gnl|rn3|chr17 (19419575-19419309) | |
| 627-864, gnl|bosTau2|chr8 (52046912-52047150) | |
| 627-864, gnl|canFam2|chr1 (99988050-99988248) | |
| 627-864, gnl|canFam2|chr1 (99988127-99988259) | |
| 627-864, gnl|dasNov1|scaffold_168210 (1721-1913) | |
| 627-864, gnl|dasNov1|scaffold_168210 (1786-1912) | |
| 627-864, gnl|echTel1|scaffold_298687 (9039-8870) | |
| 627-864, gnl|echTel1|scaffold_298687 (8974-8802) | |
| 627-864, gnl|hg17|chr18 (63608184-63608380) | |
| 627-864, gnl|hg17|chr7 (148411886-148412032) | |
| 627-864, gnl|Hg17|chr9 (89173121-89173356) | |
| 627-864, gnl|loxAfr1|scaffold_95919 (4205-4384) | |
| 627-864, gnl|loxAfr1|scaffold_95919 (4253-4394) | |
| 627-864, gnl|mm7|chr13 (50691175-50690991) | |
| 627-864, gnl|mm7|chr13 (50691112-50690980) | |
| 627-864, gnl|Mm7|chr13 (50690965-50691203) | |
| 627-864, gnl|oryCun1|scaffold_138552 (4677-4847) | |
| 627-864, gnl|oryCun1|scaffold_68890 (29-151) | |
| 627-864, gnl|panTro1|chr17 (60547368-60547564) | |
| 627-864, gnl|panTro1|chr6 (151276451-151276595) | |
| 627-864, gnl|rheMac2|chr18 (61356818-61357016) | |
| 627-864, gnl|rheMac2|chr3 (186599681-186599828) | |
| 627-864, gnl|rn3|chr17 (19416817-19417008) | |
| 627-864, gnl|rn3|chr17 (19416894-19417026) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) |