Ss1.1-Mixn-0031l21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTGAGAGTGCGGAGTGTGTGCTCCGGGCTCGGAACACACATTTATTATTAAAAAAATCC AAAAAAAATCTAAAAAAATCTTTTAAAAAACCCAAAAAAAATTTACAAAAAATCCGCGTC TCCCCCGCCGGAGACTTTTATTTTTTTTTCTTCCTCTTTTATAAAATAACCCGGTGAAGC AGCCGAGACCGACCCGCCCGCCCGCGGCCCCGCAGCAGCTCCAAGAAGGAACCAAGAGAC CGAGGCCTTCCCGCTGCCCGGACCCGACACCGCCACCCTCTCTCCCCTGCCGGCAGCCAG CAGCCAGCGGCAAGCGGATCGACTCCGTTCTGCGGCCGTTGAGTAGTTTTCGATTCCGGT TGATTTTTGTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTGAGAGTGCGGAGTGTGTGCTCCGGGCTCGGAACACACATTTATTATTAAAAAAATCC AAAAAAAATCTAAAAAAATCTTTTAAAAAACCCAAAAAAAATTTACAAAAAATCCGCGTC TCCCCCGCCGGAGACTTTTATTTTTTTTTCTTCCTCTTTTATAAAATAACCCGGTGAAGC AGCCGAGACCGACCCGCCCGCCCGCGGCCCCGCAGCAGCTCCAAGAAGGAACCAAGAGAC CGAGGCCTTCCCGCTGCCCGGACCCGACACCGCCACCCTCTCTCCCCTGCCGGCAGCCAG CAGCCAGCGGCAAGCGGATCGACTCCGTTCTGCGGCCGTTGAGTAGTTTTCGATTCCGGT TGATTTTTGTCC |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1-94, - strand, RNAz p=0.99879 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-94, - strand, RNAz p=0.99879 |
| Aligned organism(s): 67 entry(ies) | More info |
| Aligned organism(s): 67 entry(ies) | Help | Less info |
| 1-147, gnl|bosTau2|chr9 (59702376-59702226) | |
| 1-147, gnl|canFam2|chr13 (5595290-5595192) | |
| 1-147, gnl|canFam2|chr13 (5595180-5595290) | |
| 1-147, gnl|canFam2|chr13 (5595090-5595290) | |
| 1-147, gnl|canFam2|chr13 (5595290-5595192) | |
| 1-147, gnl|canFam2|chr13 (5595290-5595192) | |
| 1-147, gnl|canFam2|chr13 (5595193-5595290) | |
| 1-147, gnl|dasNov1|scaffold_138245 (1506-1696) | |
| 1-147, gnl|dasNov1|scaffold_70157 (462-564) | |
| 1-147, gnl|dasNov1|scaffold_70157 (564-462) | |
| 1-147, gnl|dasNov1|scaffold_70157 (462-564) | |
| 1-147, gnl|dasNov1|scaffold_70157 (462-566) | |
| 1-147, gnl|dasNov1|scaffold_70157 (556-462) | |
| 1-147, gnl|echTel1|scaffold_240828 (3630-3727) | |
| 1-147, gnl|echTel1|scaffold_240828 (3727-3630) | |
| 1-147, gnl|echTel1|scaffold_240828 (3830-3630) | |
| 1-147, gnl|echTel1|scaffold_240828 (3630-3727) | |
| 1-147, gnl|echTel1|scaffold_240828 (3630-3727) | |
| 1-147, gnl|echTel1|scaffold_240828 (3727-3630) | |
| 1-147, gnl|hg17|chr10 (38968523-38968649) | |
| 1-147, gnl|hg17|chr10 (42097762-42097886) | |
| 1-147, gnl|hg17|chr16 (32360472-32360598) | |
| 1-147, gnl|hg17|chr2 (91487419-91487542) | |
| 1-147, gnl|hg17|chr22 (15278613-15278736) | |
| 1-147, gnl|hg17|chr3 (156510598-156510793) | |
| 1-147, gnl|loxAfr1|scaffold_12705 (67196-67102) | |
| 1-147, gnl|loxAfr1|scaffold_12705 (67102-67199) | |
| 1-147, gnl|loxAfr1|scaffold_12705 (67008-67196) | |
| 1-147, gnl|loxAfr1|scaffold_12705 (67196-67102) | |
| 1-147, gnl|loxAfr1|scaffold_12705 (67196-67102) | |
| 1-147, gnl|loxAfr1|scaffold_12705 (67102-67199) | |
| 1-147, gnl|mm7|chr15 (36718207-36718406) | |
| 1-147, gnl|mm7|chr3 (59559343-59559450) | |
| 1-147, gnl|mm7|chr3 (59559445-59559343) | |
| 1-147, gnl|mm7|chr3 (59559343-59559450) | |
| 1-147, gnl|mm7|chr3 (59559343-59559445) | |
| 1-147, gnl|mm7|chr3 (59559445-59559343) | |
| 1-147, gnl|monDom2|scaffold_3 (63128286-63128395) | |
| 1-147, gnl|monDom2|scaffold_3 (63128395-63128286) | |
| 1-147, gnl|monDom2|scaffold_3 (63128481-63128286) | |
| 1-147, gnl|monDom2|scaffold_3 (63128286-63128395) | |
| 1-147, gnl|monDom2|scaffold_3 (63128286-63128395) | |
| 1-147, gnl|monDom2|scaffold_3 (63128383-63128286) | |
| 1-147, gnl|oryCun1|scaffold_195738 (40228-40341) | |
| 1-147, gnl|oryCun1|scaffold_195738 (40336-40228) | |
| 1-147, gnl|oryCun1|scaffold_195738 (40428-40228) | |
| 1-147, gnl|oryCun1|scaffold_195738 (40228-40341) | |
| 1-147, gnl|oryCun1|scaffold_195738 (40228-40336) | |
| 1-147, gnl|oryCun1|scaffold_195738 (40336-40228) | |
| 1-147, gnl|panTro1|chr18 (34244761-34244885) | |
| 1-147, gnl|panTro1|chr18 (34244882-34244761) | |
| 1-147, gnl|panTro1|chr18 (34244761-34244885) | |
| 1-147, gnl|panTro1|chr2 (159651999-159652196) | |
| 1-147, gnl|panTro1|chr23 (15241658-15241780) | |
| 1-147, gnl|panTro1|chr23 (15241658-15241786) | |
| 1-147, gnl|rheMac2|chr2 (132360444-132360239) | |
| 1-147, gnl|rheMac2|chr5 (95888202-95888324) | |
| 1-147, gnl|rheMac2|chr5 (95888324-95888199) | |
| 1-147, gnl|rheMac2|chr5 (95888202-95888324) | |
| 1-147, gnl|rheMac2|chr5 (95888202-95888333) | |
| 1-147, gnl|rheMac2|chr5 (95888324-95888199) | |
| 1-147, gnl|rn3|chr7 (72149429-72149317) | |
| 1-147, gnl|rn3|chr7 (72149322-72149429) | |
| 1-147, gnl|rn3|chr7 (72149232-72149429) | |
| 1-147, gnl|rn3|chr7 (72149429-72149317) | |
| 1-147, gnl|rn3|chr7 (72149429-72149322) | |
| 1-147, gnl|rn3|chr7 (72149322-72149429) |
| Aligned organism(s): 67 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-147, gnl|bosTau2|chr9 (59702376-59702226) | |
| 1-147, gnl|canFam2|chr13 (5595290-5595192) | |
| 1-147, gnl|canFam2|chr13 (5595180-5595290) | |
| 1-147, gnl|canFam2|chr13 (5595090-5595290) | |
| 1-147, gnl|canFam2|chr13 (5595290-5595192) | |
| 1-147, gnl|canFam2|chr13 (5595290-5595192) | |
| 1-147, gnl|canFam2|chr13 (5595193-5595290) | |
| 1-147, gnl|dasNov1|scaffold_138245 (1506-1696) | |
| 1-147, gnl|dasNov1|scaffold_70157 (462-564) | |
| 1-147, gnl|dasNov1|scaffold_70157 (564-462) | |
| 1-147, gnl|dasNov1|scaffold_70157 (462-564) | |
| 1-147, gnl|dasNov1|scaffold_70157 (462-566) | |
| 1-147, gnl|dasNov1|scaffold_70157 (556-462) | |
| 1-147, gnl|echTel1|scaffold_240828 (3630-3727) | |
| 1-147, gnl|echTel1|scaffold_240828 (3727-3630) | |
| 1-147, gnl|echTel1|scaffold_240828 (3830-3630) | |
| 1-147, gnl|echTel1|scaffold_240828 (3630-3727) | |
| 1-147, gnl|echTel1|scaffold_240828 (3630-3727) | |
| 1-147, gnl|echTel1|scaffold_240828 (3727-3630) | |
| 1-147, gnl|hg17|chr10 (38968523-38968649) | |
| 1-147, gnl|hg17|chr10 (42097762-42097886) | |
| 1-147, gnl|hg17|chr16 (32360472-32360598) | |
| 1-147, gnl|hg17|chr2 (91487419-91487542) | |
| 1-147, gnl|hg17|chr22 (15278613-15278736) | |
| 1-147, gnl|hg17|chr3 (156510598-156510793) | |
| 1-147, gnl|loxAfr1|scaffold_12705 (67196-67102) | |
| 1-147, gnl|loxAfr1|scaffold_12705 (67102-67199) | |
| 1-147, gnl|loxAfr1|scaffold_12705 (67008-67196) | |
| 1-147, gnl|loxAfr1|scaffold_12705 (67196-67102) | |
| 1-147, gnl|loxAfr1|scaffold_12705 (67196-67102) | |
| 1-147, gnl|loxAfr1|scaffold_12705 (67102-67199) | |
| 1-147, gnl|mm7|chr15 (36718207-36718406) | |
| 1-147, gnl|mm7|chr3 (59559343-59559450) | |
| 1-147, gnl|mm7|chr3 (59559445-59559343) | |
| 1-147, gnl|mm7|chr3 (59559343-59559450) | |
| 1-147, gnl|mm7|chr3 (59559343-59559445) | |
| 1-147, gnl|mm7|chr3 (59559445-59559343) | |
| 1-147, gnl|monDom2|scaffold_3 (63128286-63128395) | |
| 1-147, gnl|monDom2|scaffold_3 (63128395-63128286) | |
| 1-147, gnl|monDom2|scaffold_3 (63128481-63128286) | |
| 1-147, gnl|monDom2|scaffold_3 (63128286-63128395) | |
| 1-147, gnl|monDom2|scaffold_3 (63128286-63128395) | |
| 1-147, gnl|monDom2|scaffold_3 (63128383-63128286) | |
| 1-147, gnl|oryCun1|scaffold_195738 (40228-40341) | |
| 1-147, gnl|oryCun1|scaffold_195738 (40336-40228) | |
| 1-147, gnl|oryCun1|scaffold_195738 (40428-40228) | |
| 1-147, gnl|oryCun1|scaffold_195738 (40228-40341) | |
| 1-147, gnl|oryCun1|scaffold_195738 (40228-40336) | |
| 1-147, gnl|oryCun1|scaffold_195738 (40336-40228) | |
| 1-147, gnl|panTro1|chr18 (34244761-34244885) | |
| 1-147, gnl|panTro1|chr18 (34244882-34244761) | |
| 1-147, gnl|panTro1|chr18 (34244761-34244885) | |
| 1-147, gnl|panTro1|chr2 (159651999-159652196) | |
| 1-147, gnl|panTro1|chr23 (15241658-15241780) | |
| 1-147, gnl|panTro1|chr23 (15241658-15241786) | |
| 1-147, gnl|rheMac2|chr2 (132360444-132360239) | |
| 1-147, gnl|rheMac2|chr5 (95888202-95888324) | |
| 1-147, gnl|rheMac2|chr5 (95888324-95888199) | |
| 1-147, gnl|rheMac2|chr5 (95888202-95888324) | |
| 1-147, gnl|rheMac2|chr5 (95888202-95888333) | |
| 1-147, gnl|rheMac2|chr5 (95888324-95888199) | |
| 1-147, gnl|rn3|chr7 (72149429-72149317) | |
| 1-147, gnl|rn3|chr7 (72149322-72149429) | |
| 1-147, gnl|rn3|chr7 (72149232-72149429) | |
| 1-147, gnl|rn3|chr7 (72149429-72149317) | |
| 1-147, gnl|rn3|chr7 (72149429-72149322) | |
| 1-147, gnl|rn3|chr7 (72149322-72149429) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| eep (0.245128) | |
| nco (0.161734) | |
| nca (0.136874) | |
| ute (0.132784) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.245128) | |
| nco (0.161734) | |
| nca (0.136874) | |
| ute (0.132784) |