Non-Coding RNA Search

Ss1.1-Mixn-0031m04.5

Sequence:


               
               TTTTTTTTTTTTTGTAATAAAGACACTGCTTTTATTTAGTTCGATATGTTTCTATACAGA
ACGCAGAAAACACATCTTAAAATCATATAGAAGGAAATAAAAACACGTCAGTGGTTGGTG
AACACTTGAATGTGAGATTGGCTCTCTGTCTCACAGAGTCCAATGACCATTGCCAGCTGG
GCGATCAGGGGAGGAGGCTGCCTGCAAGGGCATTGTTGCTGTTATTCTGTTCACTGCCCC
ATCGCCTCCTGTTGCTATGGTAACAGGCCATTCTGGGCCAGCCACTTCTCTGCGTGGCAG
TGCCCAATGCTGGGGTTGCTAAGGGCAACGGAGCTATTTGGAAGGCCTTTCAAAGCCCTC
ACCTGGAACACTGGGAATTGTTTATCTTTTGAGGAGGTCATCAAACACAATCTGACCAGG
TCAGACCCTGCTTGTGCTCCTGACTCTGGGGCATTAGGGAAACTCTGGCTTGGATCAGGA
CTTGGAGGCACAAGCCCCCCCGAGCCCTCCTGTACAGGCTCCCCACACCAGGGCACTGCT
CCCCCTACTGGAGATCCAGGCAGGAGAGAGGCCCTGTGGGAGAGGAGCAAGGGGGAACCC
CCTCCAAAGAAGGGCAGGGTAGAGACCTCTCCACTCTGACCGTCCCTCTCCTCCTGAGGC
AGCACACTCAAATCTTCTGCAAAACAGTCAATATGGCTTAGAAGTGGCTGCTTGGCGTGC
AAAGGGAGCCTGGGTCCACCCACCCACCTACAGATTATGGAAGGGATACATTATTGCAAA
AGGCATTCCTCCCTAAAAGGTACCCAAAATAACTATTCAGACATCAAGAAAAGTCATGCT
CAAAATGGTTTCTTCCAAAGGAGGAGAATCAAAGCAGAGTGGGTGCCCCTGAGTCATGGG
ACAGAGATGCAGATGGATGGACGGATGTTCTGCTAAAAAAGGCAAAAGAAGCCCCAGTGT
AATTCCGAAGTTTAAACCATTAGGAAAGAAGTGGGGGTGGGGGGTGGAATCGCAAAGAGC
AAAGCCGTCAGTTCCATGGAATCAACACTAAGAGCTTGTACAAACTGCTGTAAGCATCAC
CATTTTTAATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTGTAATAAAGACACTGCTTTTATTTAGTTCGATATGTTTCTATACAGA
ACGCAGAAAACACATCTTAAAATCATATAGAAGGAAATAAAAACACGTCAGTGGTTGGTG
AACACTTGAATGTGAGATTGGCTCTCTGTCTCACAGAGTCCAATGACCATTGCCAGCTGG
GCGATCAGGGGAGGAGGCTGCCTGCAAGGGCATTGTTGCTGTTATTCTGTTCACTGCCCC
ATCGCCTCCTGTTGCTATGGTAACAGGCCATTCTGGGCCAGCCACTTCTCTGCGTGGCAG
TGCCCAATGCTGGGGTTGCTAAGGGCAACGGAGCTATTTGGAAGGCCTTTCAAAGCCCTC
ACCTGGAACACTGGGAATTGTTTATCTTTTGAGGAGGTCATCAAACACAATCTGACCAGG
TCAGACCCTGCTTGTGCTCCTGACTCTGGGGCATTAGGGAAACTCTGGCTTGGATCAGGA
CTTGGAGGCACAAGCCCCCCCGAGCCCTCCTGTACAGGCTCCCCACACCAGGGCACTGCT
CCCCCTACTGGAGATCCAGGCAGGAGAGAGGCCCTGTGGGAGAGGAGCAAGGGGGAACCC
CCTCCAAAGAAGGGCAGGGTAGAGACCTCTCCACTCTGACCGTCCCTCTCCTCCTGAGGC
AGCACACTCAAATCTTCTGCAAAACAGTCAATATGGCTTAGAAGTGGCTGCTTGGCGTGC
AAAGGGAGCCTGGGTCCACCCACCCACCTACAGATTATGGAAGGGATACATTATTGCAAA
AGGCATTCCTCCCTAAAAGGTACCCAAAATAACTATTCAGACATCAAGAAAAGTCATGCT
CAAAATGGTTTCTTCCAAAGGAGGAGAATCAAAGCAGAGTGGGTGCCCCTGAGTCATGGG
ACAGAGATGCAGATGGATGGACGGATGTTCTGCTAAAAAAGGCAAAAGAAGCCCCAGTGT
AATTCCGAAGTTTAAACCATTAGGAAAGAAGTGGGGGTGGGGGGTGGAATCGCAAAGAGC
AAAGCCGTCAGTTCCATGGAATCAACACTAAGAGCTTGTACAAACTGCTGTAAGCATCAC
CATTTTTAATCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55620319|ref|XP_530604.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55620319|ref|XP_530604.1|

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               12-130, - strand, RNAz p=0.902943
               

               
               211-497, - strand, RNAz p=0.999485
               

               
               529-667, - strand, RNAz p=0.987427
               

               
               708-907, - strand, RNAz p=0.781201

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               12-130, - strand, RNAz p=0.902943
               

               
               211-497, - strand, RNAz p=0.999485
               

               
               529-667, - strand, RNAz p=0.987427
               

               
               708-907, - strand, RNAz p=0.781201

Homologous human UTR: 4 entry(ies)

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Homologous human UTR: 4 entry(ies)

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               3' of NM_004393, -
               

               
               3' of NM_004393, -
               

               
               3' of NM_004393, -
               

               
               3' of NM_004393, -

Homologous human UTR: 4 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_004393, -
               

               
               3' of NM_004393, -
               

               
               3' of NM_004393, -
               

               
               3' of NM_004393, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               12-1092, gnl|bosTau2|chr22 (37964365-37963262)
               

               
               12-1092, gnl|Hg17|chr3 (49548052-49546955)
               

               
               12-1092, gnl|Mm7|chr9 (107934455-107935535)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-1092, gnl|bosTau2|chr22 (37964365-37963262)
               

               
               12-1092, gnl|Hg17|chr3 (49548052-49546955)
               

               
               12-1092, gnl|Mm7|chr9 (107934455-107935535)

Expressed library(ies): 27 entry(ies)

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Expressed library(ies): 27 entry(ies)

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               fcc (0.39557)
               

               
               eru (0.360144)
               

               
               mcp (0.341297)
               

               
               cag (0.302389)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               cty (0.20816)
               

               
               ton (0.1755)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               eru (0.360144)
               

               
               mcp (0.341297)
               

               
               cag (0.302389)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               cty (0.20816)
               

               
               ton (0.1755)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	12-130, - strand, RNAz p=0.902943
	211-497, - strand, RNAz p=0.999485
	529-667, - strand, RNAz p=0.987427
	708-907, - strand, RNAz p=0.781201

	3' of NM_004393, -
	3' of NM_004393, -
	3' of NM_004393, -
	3' of NM_004393, -

	12-1092, gnl\|bosTau2\|chr22 (37964365-37963262)
	12-1092, gnl\|Hg17\|chr3 (49548052-49546955)
	12-1092, gnl\|Mm7\|chr9 (107934455-107935535)

	fcc (0.39557)
	eru (0.360144)
	mcp (0.341297)
	cag (0.302389)
	ece (0.229305)
	mas (0.210305)
	cty (0.20816)
	ton (0.1755)
	cut (0.169924)
	fhi (0.169578)
	cki (0.165235)
	mga (0.160205)
	tbr (0.154178)
	hyp (0.142837)
	pty (0.142714)
	che (0.136314)
	pla (0.133672)
	cov (0.132153)
	kid (0.129735)
	ova (0.129132)
	ese (0.126502)
	bla (0.124347)
	med (0.116252)
	ecc (0.115035)
	jca (0.11396)
	spc (0.113366)
	eje (0.0988338)