Non-Coding RNA Search

Ss1.1-Mixn-0031n17.5

Sequence:


               
               CCTTACCGCAGGGTGCAGGCTGGGTGTGGTGAGGCCTAGTTGTATCGGGAGACTCCTCCT
ACCCTATAGCCGCTCCCAGCCCTGACGAAGCAGCAGCAGCACCCTTCACCCTCACTGGGT
TCAGTTGGAGCTATAGTAGTCAGAGGCCTCAGGGTACCCCTGGTGTGGGCCTGGGGCACA
GGGTACAAGGTTAAGGGTACTTGGTGTCCCTGAGCCTGGTCTACCACCCCTGCAGGTGAT
GCTTCAGATGAGGGAGCCGTGGCCACCTGAGCACCCCTTGCATGGCCTGAAGAGCTGGGG
GGAGACCTGGTGCCCCACCTACCCTGGGAGGCCTGCCGGGGGTGAGTGGGCAGCCAGGTC
AGTTTCTGCCCAGGTTCTCCGTGGACCCCGGGCCCCCACCCCTCGGGGGTCTCACAGCAT
ATGATGAGGGGTCCCTGGGACATTTCCTTCTTCAGGCCCTGCCCAGGCAGCTTGGCCTGA
GCCAACTCTGTTTTCTGGTTTCCCTCTGCCTTGGGCATCCTGCCTGCATGGGGAACTCCT
CATAACCATTGGTGTTCCATAGGCGACAGGCCTCAGACAAGAGCTCTCACCTGGGGGGAC
CTGCACCCCCAGGCCTGGGCACTAGAGTACTCTCGAAGGCACCCAGGGGCACAAGACCCT
TGTGACCTGGGCCTCAGTCCCTTTCTGTCACTGGCTCAGGCTCAAGGGTGTGAGGGCCAC
AGGCATGTCCCAGGCAGGGTAGGGGCAAGAGCTGAATGTGAGGGTGATGCTAGTCCCAGA
CTGCTCCTGTGCCCTCCTAGCCAGTGCCCAGCGCTCTGTCCTGAGGAGCCAGTAACACGT
GGGTTACCCCCATCTTGCAGGGTTGTGGTATTTGGGGGCAATCGATGCCCTGACTGTCCC
CTCTGACCTCCCGCCAACTGGGACAAGGGGACACAGCTGTGGCATATGCCACCAGACCCT
GGGAGGGAGGGCTTTGGCAGCCGGGGTCCACTGGCCCCGCCATGCTCTCTATGGGAAACT
GCCCCTCCCCGTCTAGGGGCTGGGCCATACCACTGATATATGCAAACCCGCCAGTCCGAG
CCCTGCCCCACCTGTGTCCCTCTTTCCCCAGGCTGGCTCTGCCCCCACCCCACCCCCAGC
ATGTACATTGTGCTGTAGATGTCCCGTGGGCCGCACGTGTGGGTGCCCACGGTGGGTGGG
GGCGGGCGCTCAGGGCGCACTCGGCCGGCCCCTGCCCATCCTCTCTGGCGTGGACGCTAT
CGTCTTTGTACCTTTGCATCCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTACCGCAGGGTGCAGGCTGGGTGTGGTGAGGCCTAGTTGTATCGGGAGACTCCTCCT
ACCCTATAGCCGCTCCCAGCCCTGACGAAGCAGCAGCAGCACCCTTCACCCTCACTGGGT
TCAGTTGGAGCTATAGTAGTCAGAGGCCTCAGGGTACCCCTGGTGTGGGCCTGGGGCACA
GGGTACAAGGTTAAGGGTACTTGGTGTCCCTGAGCCTGGTCTACCACCCCTGCAGGTGAT
GCTTCAGATGAGGGAGCCGTGGCCACCTGAGCACCCCTTGCATGGCCTGAAGAGCTGGGG
GGAGACCTGGTGCCCCACCTACCCTGGGAGGCCTGCCGGGGGTGAGTGGGCAGCCAGGTC
AGTTTCTGCCCAGGTTCTCCGTGGACCCCGGGCCCCCACCCCTCGGGGGTCTCACAGCAT
ATGATGAGGGGTCCCTGGGACATTTCCTTCTTCAGGCCCTGCCCAGGCAGCTTGGCCTGA
GCCAACTCTGTTTTCTGGTTTCCCTCTGCCTTGGGCATCCTGCCTGCATGGGGAACTCCT
CATAACCATTGGTGTTCCATAGGCGACAGGCCTCAGACAAGAGCTCTCACCTGGGGGGAC
CTGCACCCCCAGGCCTGGGCACTAGAGTACTCTCGAAGGCACCCAGGGGCACAAGACCCT
TGTGACCTGGGCCTCAGTCCCTTTCTGTCACTGGCTCAGGCTCAAGGGTGTGAGGGCCAC
AGGCATGTCCCAGGCAGGGTAGGGGCAAGAGCTGAATGTGAGGGTGATGCTAGTCCCAGA
CTGCTCCTGTGCCCTCCTAGCCAGTGCCCAGCGCTCTGTCCTGAGGAGCCAGTAACACGT
GGGTTACCCCCATCTTGCAGGGTTGTGGTATTTGGGGGCAATCGATGCCCTGACTGTCCC
CTCTGACCTCCCGCCAACTGGGACAAGGGGACACAGCTGTGGCATATGCCACCAGACCCT
GGGAGGGAGGGCTTTGGCAGCCGGGGTCCACTGGCCCCGCCATGCTCTCTATGGGAAACT
GCCCCTCCCCGTCTAGGGGCTGGGCCATACCACTGATATATGCAAACCCGCCAGTCCGAG
CCCTGCCCCACCTGTGTCCCTCTTTCCCCAGGCTGGCTCTGCCCCCACCCCACCCCCAGC
ATGTACATTGTGCTGTAGATGTCCCGTGGGCCGCACGTGTGGGTGCCCACGGTGGGTGGG
GGCGGGCGCTCAGGGCGCACTCGGCCGGCCCCTGCCCATCCTCTCTGGCGTGGACGCTAT
CGTCTTTGTACCTTTGCATCCTTT

Predicted RNA structure(s): 5 entry(ies)

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Predicted RNA structure(s): 5 entry(ies)

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               5-121, - strand, RNAz p=0.780316
               

               
               298-491, - strand, RNAz p=0.99965
               

               
               588-687, - strand, RNAz p=0.745246
               

               
               725-826, - strand, RNAz p=0.745371
               

               
               855-1203, - strand, RNAz p=0.999103

Predicted RNA structure(s): 5 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               5-121, - strand, RNAz p=0.780316
               

               
               298-491, - strand, RNAz p=0.99965
               

               
               588-687, - strand, RNAz p=0.745246
               

               
               725-826, - strand, RNAz p=0.745371
               

               
               855-1203, - strand, RNAz p=0.999103

Predicted microRNA(s): 4 entry(ies)

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Predicted microRNA(s): 4 entry(ies)

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               794-932, - strand, RNAmicro p=0.99965
               

               
               296-406, - strand, RNAmicro p=0.999155
               

               
               323-463, + strand, RNAmicro p=0.997545
               

               
               780-913, + strand, RNAmicro p=0.977309

Predicted microRNA(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               794-932, - strand, RNAmicro p=0.99965
               

               
               296-406, - strand, RNAmicro p=0.999155
               

               
               323-463, + strand, RNAmicro p=0.997545
               

               
               780-913, + strand, RNAmicro p=0.977309

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               5-1284, gnl|bosTau2|chr7 (2218190-2219451)
               

               
               5-1284, gnl|Hg17|chr19 (18752792-18754107)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-1284, gnl|bosTau2|chr7 (2218190-2219451)
               

               
               5-1284, gnl|Hg17|chr19 (18752792-18754107)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ece (0.229305)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)

	5-121, - strand, RNAz p=0.780316
	298-491, - strand, RNAz p=0.99965
	588-687, - strand, RNAz p=0.745246
	725-826, - strand, RNAz p=0.745371
	855-1203, - strand, RNAz p=0.999103

	794-932, - strand, RNAmicro p=0.99965
	296-406, - strand, RNAmicro p=0.999155
	323-463, + strand, RNAmicro p=0.997545
	780-913, + strand, RNAmicro p=0.977309

	5-1284, gnl\|bosTau2\|chr7 (2218190-2219451)
	5-1284, gnl\|Hg17\|chr19 (18752792-18754107)