Ss1.1-Mixn-0031o10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TATGAAAGACTAAAAGAGGAACTTGCAAAAGCTCAGAGGGAACTGAAGTTAAAAGATGAA GAGTGTGAGAGGCTTTCTAAAGTACGAGATCAACTTGGACAGGAATTGGAGGAACTCACA GCTAGTCTGTTTGAGGAAGCTCATAAGATGGTCAGAGAAGCAAATGTCAAGCAGGCAACA GCAGAAAAACAGCTGAAAGAAGCACAAGGAAAAATTGATGTACTTCAAGCTGAAGTGGCT GCATTGAAGACACTTGTATTGTCCAGTTCTCCGACATCACCTACACAAGAGCCTCTGCCA GGTGGAAAGACACATTTTAAAAAGGGTCATACACGAAATAAAAGTACAAGCAGTGCTATG AGTGGCAGTCATCAGGACCTCAGTGTGATACAGCCAATTGTAAAAGACTGCAAAGAGGCT GACTTATCTCTGTATAATGAATTCAGATCTTGGAAGGATGAGCCCACAATGGACAGAACA TGTCCTTTCTTAGATAAAATCTATCAAGAAGATATCTTTCCATGTTTAACCTTCTCAAAA AGTGAGTTGGCTTCAGCTGTTCTGGAGGCTGTGGAAAACAATACGCTAAGCATTGAACCT GTGGGATTGCAACCTGTTCGATTTGTGAAAGCGTCTGCAGTCGAATGTGGAGGACCAAAA AAATGTGCTCTCACAGGTCAGAGTAAGTCCTGTAAACACAGAATTAAATTAGGAGACTCA AGCAACTATTATTATATTTCTCCATTCTGCAGATACAGGATCACTTCTGTGTGTAACTTT TTCACATACATTCGATATATTCAGCAGGGACTCGTGAAACAGCAAGATGTTGATCAGATG TTTTGGGAAGTTATGCAGTTGAGAAAAGAGATGTCATTGGCAAAGCTGGGATATTTCAAA GAGGAACTCTGAAGCTCTGCCTGGGACCATGCATGAACCTCCCTGAATACCTGGAAAATG GCTGAATATTTTTATGGTTACTTGATATTTATTTCCAAGGAGTGGGTCCAAGACTTTTTC CTTCTTTTGCAAATTATACTAAGAAGTACTGTGATTTCGTTTAAACTGACCTATGCTGTG TTTGCTTTTTCTTTAGTTGAACATTCTATAAAGAATGACAGGTGTACTAGTGATTGTAAT TTATAGTTGCAAAAAAAGCTAAATAAATAAATGTTAGATTGAGAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TATGAAAGACTAAAAGAGGAACTTGCAAAAGCTCAGAGGGAACTGAAGTTAAAAGATGAA GAGTGTGAGAGGCTTTCTAAAGTACGAGATCAACTTGGACAGGAATTGGAGGAACTCACA GCTAGTCTGTTTGAGGAAGCTCATAAGATGGTCAGAGAAGCAAATGTCAAGCAGGCAACA GCAGAAAAACAGCTGAAAGAAGCACAAGGAAAAATTGATGTACTTCAAGCTGAAGTGGCT GCATTGAAGACACTTGTATTGTCCAGTTCTCCGACATCACCTACACAAGAGCCTCTGCCA GGTGGAAAGACACATTTTAAAAAGGGTCATACACGAAATAAAAGTACAAGCAGTGCTATG AGTGGCAGTCATCAGGACCTCAGTGTGATACAGCCAATTGTAAAAGACTGCAAAGAGGCT GACTTATCTCTGTATAATGAATTCAGATCTTGGAAGGATGAGCCCACAATGGACAGAACA TGTCCTTTCTTAGATAAAATCTATCAAGAAGATATCTTTCCATGTTTAACCTTCTCAAAA AGTGAGTTGGCTTCAGCTGTTCTGGAGGCTGTGGAAAACAATACGCTAAGCATTGAACCT GTGGGATTGCAACCTGTTCGATTTGTGAAAGCGTCTGCAGTCGAATGTGGAGGACCAAAA AAATGTGCTCTCACAGGTCAGAGTAAGTCCTGTAAACACAGAATTAAATTAGGAGACTCA AGCAACTATTATTATATTTCTCCATTCTGCAGATACAGGATCACTTCTGTGTGTAACTTT TTCACATACATTCGATATATTCAGCAGGGACTCGTGAAACAGCAAGATGTTGATCAGATG TTTTGGGAAGTTATGCAGTTGAGAAAAGAGATGTCATTGGCAAAGCTGGGATATTTCAAA GAGGAACTCTGAAGCTCTGCCTGGGACCATGCATGAACCTCCCTGAATACCTGGAAAATG GCTGAATATTTTTATGGTTACTTGATATTTATTTCCAAGGAGTGGGTCCAAGACTTTTTC CTTCTTTTGCAAATTATACTAAGAAGTACTGTGATTTCGTTTAAACTGACCTATGCTGTG TTTGCTTTTTCTTTAGTTGAACATTCTATAAAGAATGACAGGTGTACTAGTGATTGTAAT TTATAGTTGCAAAAAAAGCTAAATAAATAAATGTTAGATTGAGAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
| 32-136, gnl|bosTau2|chr5 (29202584-29202687) | |
| 32-136, gnl|canFam2|chr10 (14680264-14680384) | |
| 32-136, gnl|danRer3|chr9 (38955079-38954965) | |
| 32-136, gnl|dasNov1|scaffold_197738 (739-847) | |
| 32-136, gnl|echTel1|scaffold_226399 (7033-6909) | |
| 32-136, gnl|fr1|chrUn (180163071-180162965) | |
| 32-136, gnl|galGal2|chr1 (32487356-32487465) | |
| 32-136, gnl|hg17|chr12 (68464760-68464880) | |
| 32-136, gnl|Hg17|chr12 (68464760-68464863) | |
| 32-136, gnl|loxAfr1|scaffold_6277 (16269-16149) | |
| 32-136, gnl|mm7|chr10 (116436178-116436058) | |
| 32-136, gnl|Mm7|chr10 (116436176-116436073) | |
| 32-136, gnl|monDom2|scaffold_36 (630818-630944) | |
| 32-136, gnl|oryCun1|scaffold_75769 (1243-1123) | |
| 32-136, gnl|panTro1|chr10_random (26336989-26337109) | |
| 32-136, gnl|rheMac2|chr11 (66771847-66771967) | |
| 32-136, gnl|rn3|chr7 (56268045-56267925) | |
| 32-136, gnl|tetNig1|chrUn_random (30087684-30087578) | |
| 211-418, gnl|bosTau2|chr5 (29209841-29210048) | |
| 211-418, gnl|canFam2|chr10 (14687284-14687512) | |
| 211-418, gnl|danRer3|chr9 (38942893-38942686) | |
| 211-418, gnl|echTel1|scaffold_226399 (4322-4094) | |
| 211-418, gnl|fr1|chrUn (180162289-180162058) | |
| 211-418, gnl|galGal2|chr1 (32490400-32490628) | |
| 211-418, gnl|hg17|chr12 (68475172-68475400) | |
| 211-418, gnl|Hg17|chr12 (68475185-68475392) | |
| 211-418, gnl|loxAfr1|scaffold_63848 (234-462) | |
| 211-418, gnl|mm7|chr10 (116426868-116426640) | |
| 211-418, gnl|Mm7|chr10 (116426853-116426646) | |
| 211-418, gnl|monDom2|scaffold_36 (635138-635366) | |
| 211-418, gnl|oryCun1|scaffold_199021 (391921-391693) | |
| 211-418, gnl|panTro1|chr10_random (26397950-26398178) | |
| 211-418, gnl|rheMac2|chr11 (66782372-66782600) | |
| 211-418, gnl|rn3|chr7 (56259813-56259585) | |
| 211-418, gnl|tetNig1|chrUn_random (30087097-30086864) | |
| 211-418, gnl|xenTro1|scaffold_405 (562126-561900) | |
| 545-659, gnl|bosTau2|chr5 (29215121-29215235) | |
| 545-659, gnl|canFam2|chr10 (14691726-14691876) | |
| 545-659, gnl|danRer3|chr9 (38937440-38937310) | |
| 545-659, gnl|echTel1|scaffold_316579 (37447-37284) | |
| 545-659, gnl|fr1|chrUn (180161636-180161489) | |
| 545-659, gnl|galGal2|chr1 (32496619-32496750) | |
| 545-659, gnl|hg17|chr12 (68481640-68481791) | |
| 545-659, gnl|Hg17|chr12 (68481654-68481768) | |
| 545-659, gnl|loxAfr1|scaffold_63848 (5226-5376) | |
| 545-659, gnl|mm7|chr10 (116422108-116421962) | |
| 545-659, gnl|Mm7|chr10 (116422096-116421982) | |
| 545-659, gnl|monDom2|scaffold_36 (640059-640195) | |
| 545-659, gnl|oryCun1|scaffold_199021 (386793-386643) | |
| 545-659, gnl|panTro1|chr10_random (26404405-26404556) | |
| 545-659, gnl|rheMac2|chr11 (66787263-66787414) | |
| 545-659, gnl|rn3|chr7 (56256380-56256235) | |
| 545-659, gnl|xenTro1|scaffold_405 (559406-559277) | |
| 660-770, gnl|bosTau2|chr5 (29220021-29220131) | |
| 660-770, gnl|Hg17|chr12 (68492825-68492935) | |
| 660-770, gnl|Mm7|chr10 (116418266-116418152) | |
| 829-1183, gnl|bosTau2|chr5 (29226263-29226619) | |
| 829-1183, gnl|Hg17|chr12 (68495410-68495772) | |
| 829-1183, gnl|Mm7|chr10 (116415004-116414659) |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 32-136, gnl|bosTau2|chr5 (29202584-29202687) | |
| 32-136, gnl|canFam2|chr10 (14680264-14680384) | |
| 32-136, gnl|danRer3|chr9 (38955079-38954965) | |
| 32-136, gnl|dasNov1|scaffold_197738 (739-847) | |
| 32-136, gnl|echTel1|scaffold_226399 (7033-6909) | |
| 32-136, gnl|fr1|chrUn (180163071-180162965) | |
| 32-136, gnl|galGal2|chr1 (32487356-32487465) | |
| 32-136, gnl|hg17|chr12 (68464760-68464880) | |
| 32-136, gnl|Hg17|chr12 (68464760-68464863) | |
| 32-136, gnl|loxAfr1|scaffold_6277 (16269-16149) | |
| 32-136, gnl|mm7|chr10 (116436178-116436058) | |
| 32-136, gnl|Mm7|chr10 (116436176-116436073) | |
| 32-136, gnl|monDom2|scaffold_36 (630818-630944) | |
| 32-136, gnl|oryCun1|scaffold_75769 (1243-1123) | |
| 32-136, gnl|panTro1|chr10_random (26336989-26337109) | |
| 32-136, gnl|rheMac2|chr11 (66771847-66771967) | |
| 32-136, gnl|rn3|chr7 (56268045-56267925) | |
| 32-136, gnl|tetNig1|chrUn_random (30087684-30087578) | |
| 211-418, gnl|bosTau2|chr5 (29209841-29210048) | |
| 211-418, gnl|canFam2|chr10 (14687284-14687512) | |
| 211-418, gnl|danRer3|chr9 (38942893-38942686) | |
| 211-418, gnl|echTel1|scaffold_226399 (4322-4094) | |
| 211-418, gnl|fr1|chrUn (180162289-180162058) | |
| 211-418, gnl|galGal2|chr1 (32490400-32490628) | |
| 211-418, gnl|hg17|chr12 (68475172-68475400) | |
| 211-418, gnl|Hg17|chr12 (68475185-68475392) | |
| 211-418, gnl|loxAfr1|scaffold_63848 (234-462) | |
| 211-418, gnl|mm7|chr10 (116426868-116426640) | |
| 211-418, gnl|Mm7|chr10 (116426853-116426646) | |
| 211-418, gnl|monDom2|scaffold_36 (635138-635366) | |
| 211-418, gnl|oryCun1|scaffold_199021 (391921-391693) | |
| 211-418, gnl|panTro1|chr10_random (26397950-26398178) | |
| 211-418, gnl|rheMac2|chr11 (66782372-66782600) | |
| 211-418, gnl|rn3|chr7 (56259813-56259585) | |
| 211-418, gnl|tetNig1|chrUn_random (30087097-30086864) | |
| 211-418, gnl|xenTro1|scaffold_405 (562126-561900) | |
| 545-659, gnl|bosTau2|chr5 (29215121-29215235) | |
| 545-659, gnl|canFam2|chr10 (14691726-14691876) | |
| 545-659, gnl|danRer3|chr9 (38937440-38937310) | |
| 545-659, gnl|echTel1|scaffold_316579 (37447-37284) | |
| 545-659, gnl|fr1|chrUn (180161636-180161489) | |
| 545-659, gnl|galGal2|chr1 (32496619-32496750) | |
| 545-659, gnl|hg17|chr12 (68481640-68481791) | |
| 545-659, gnl|Hg17|chr12 (68481654-68481768) | |
| 545-659, gnl|loxAfr1|scaffold_63848 (5226-5376) | |
| 545-659, gnl|mm7|chr10 (116422108-116421962) | |
| 545-659, gnl|Mm7|chr10 (116422096-116421982) | |
| 545-659, gnl|monDom2|scaffold_36 (640059-640195) | |
| 545-659, gnl|oryCun1|scaffold_199021 (386793-386643) | |
| 545-659, gnl|panTro1|chr10_random (26404405-26404556) | |
| 545-659, gnl|rheMac2|chr11 (66787263-66787414) | |
| 545-659, gnl|rn3|chr7 (56256380-56256235) | |
| 545-659, gnl|xenTro1|scaffold_405 (559406-559277) | |
| 660-770, gnl|bosTau2|chr5 (29220021-29220131) | |
| 660-770, gnl|Hg17|chr12 (68492825-68492935) | |
| 660-770, gnl|Mm7|chr10 (116418266-116418152) | |
| 829-1183, gnl|bosTau2|chr5 (29226263-29226619) | |
| 829-1183, gnl|Hg17|chr12 (68495410-68495772) | |
| 829-1183, gnl|Mm7|chr10 (116415004-116414659) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| rec (0.519211) | |
| cbe (0.478469) | |
| ece (0.45861) | |
| tes (0.415628) | |
| mga (0.32041) | |
| lin (0.291206) | |
| tra (0.246184) | |
| gul (0.177588) | |
| sin (0.174948) | |
| cki (0.165235) | |
| fco (0.157208) | |
| eli (0.151814) | |
| nmm (0.132802) | |
| ret (0.128733) | |
| spc (0.113366) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| rec (0.519211) | |
| cbe (0.478469) | |
| ece (0.45861) | |
| tes (0.415628) | |
| mga (0.32041) | |
| lin (0.291206) | |
| tra (0.246184) | |
| gul (0.177588) | |
| sin (0.174948) | |
| cki (0.165235) | |
| fco (0.157208) | |
| eli (0.151814) | |
| nmm (0.132802) | |
| ret (0.128733) | |
| spc (0.113366) |