Non-Coding RNA Search

Ss1.1-Mixn-0031p14.5

Sequence:


               
               TTTCCTCCAGAATATTATGGCAAGTAACCCTGTAAAACCTGATACTAGAAATTGCAAGAG
ACCGAGAGAGTTGGAGCCTCAAATGCCAGATAGTCCACAACTGTCCTCTCTTGGAAAATC
AGATACTTCTTTCTCTGAAAGCTCTGGATTATTTTATAAGGATGAAGCCCTGGAGAAAGA
TTTGAATGATATGAGCAAGGAAATTAATCTCATGTTGTCTACATATGCAAAGATCTTAAG
TGAGAGAGCAGCAGTAGATGCATCTTATATTGACGAGATAGACGGACTCTTCAAAGAAGC
CAATACTATTGAAAACTTTCTGATACAGAAAAGAGAGCTCCTGAGACAGAGGTTTACAGT
GATTGCAAACACCAGTTTCTTGTAATAGATTAGCTGGTTATTTTCTTTGTCTTTCTTTTT
ATTTAAGTCTTTTTAAGGGCTGCACCCTCAGCATATGGAAGTTCCCAGGCTAAACGTCAA
ATCACAGCCTACAAATATACAGAAACTCTTTAAATTTCTTTTCTAGATTTTAAAGGGGCT
TTAAGCTGGACACTAATATGAAGTATGTAGCTTTTTTTTTGAGAGTCAAATATTTAGTGT
GTTTTAAAACGTGTACATTATTTAAATTATATGGATTCTTTTTTCCTTAAACTTCCTAAC
CTTTCTTAAATTTCTAAAATAAGACTCATTGAGTTAATTTGATAATATTTAACAATATTA
TACTTTTCTTTTTGAATATTTTTTTTAAATGGCAGATAGCTTTGGAGATAGTTATGTTTT
TCGTGGTCAATATTGAAAAAAAGCCCCTAAAACCCCAAAGTAATTGGTCCAGTTTCTCAA
TATGTAGTTAAATTGTACTATTCCTATTTAGTATAACCACTTGATTATTTTCACTATTAT
TATTATTATACATCACTAATAAAAATTTGGTTTAAAATTATTGTCGTGTGGTAAAATAAA
AACCAGAAATTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCCTCCAGAATATTATGGCAAGTAACCCTGTAAAACCTGATACTAGAAATTGCAAGAG
ACCGAGAGAGTTGGAGCCTCAAATGCCAGATAGTCCACAACTGTCCTCTCTTGGAAAATC
AGATACTTCTTTCTCTGAAAGCTCTGGATTATTTTATAAGGATGAAGCCCTGGAGAAAGA
TTTGAATGATATGAGCAAGGAAATTAATCTCATGTTGTCTACATATGCAAAGATCTTAAG
TGAGAGAGCAGCAGTAGATGCATCTTATATTGACGAGATAGACGGACTCTTCAAAGAAGC
CAATACTATTGAAAACTTTCTGATACAGAAAAGAGAGCTCCTGAGACAGAGGTTTACAGT
GATTGCAAACACCAGTTTCTTGTAATAGATTAGCTGGTTATTTTCTTTGTCTTTCTTTTT
ATTTAAGTCTTTTTAAGGGCTGCACCCTCAGCATATGGAAGTTCCCAGGCTAAACGTCAA
ATCACAGCCTACAAATATACAGAAACTCTTTAAATTTCTTTTCTAGATTTTAAAGGGGCT
TTAAGCTGGACACTAATATGAAGTATGTAGCTTTTTTTTTGAGAGTCAAATATTTAGTGT
GTTTTAAAACGTGTACATTATTTAAATTATATGGATTCTTTTTTCCTTAAACTTCCTAAC
CTTTCTTAAATTTCTAAAATAAGACTCATTGAGTTAATTTGATAATATTTAACAATATTA
TACTTTTCTTTTTGAATATTTTTTTTAAATGGCAGATAGCTTTGGAGATAGTTATGTTTT
TCGTGGTCAATATTGAAAAAAAGCCCCTAAAACCCCAAAGTAATTGGTCCAGTTTCTCAA
TATGTAGTTAAATTGTACTATTCCTATTTAGTATAACCACTTGATTATTTTCACTATTAT
TATTATTATACATCACTAATAAAAATTTGGTTTAAAATTATTGTCGTGTGGTAAAATAAA
AACCAGAAATTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|20810479|gb|AAH29506.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|20810479|gb|AAH29506.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               75-188, - strand, RNAz p=0.669405

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               75-188, - strand, RNAz p=0.669405

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               75-188, gnl|bosTau2|chr15 (8393109-8392996)
               

               
               75-188, gnl|canFam2|chr5 (23979041-23978678)
               

               
               75-188, gnl|dasNov1|scaffold_14695 (39884-40259)
               

               
               75-188, gnl|echTel1|scaffold_286766 (36244-36615)
               

               
               75-188, gnl|hg17|chr11 (111546324-111546680)
               

               
               75-188, gnl|Hg17|chr11 (111546350-111546463)
               

               
               75-188, gnl|loxAfr1|scaffold_203603 (236-587)
               

               
               75-188, gnl|mm7|chr9 (50537107-50536775)
               

               
               75-188, gnl|Mm7|chr9 (50537081-50536969)
               

               
               75-188, gnl|monDom2|scaffold_2 (129715429-129715020)
               

               
               75-188, gnl|oryCun1|scaffold_71952 (7437-7808)
               

               
               75-188, gnl|panTro1|chr9 (113555091-113555447)
               

               
               75-188, gnl|rheMac2|chr14 (110635150-110635506)
               

               
               75-188, gnl|rn3|chr8 (53939949-53939646)
               

               
               75-188, gnl|xenTro1|scaffold_1807 (34508-34159)
               


               
               239-941, gnl|bosTau2|chr15 (8392094-8391423)
               

               
               239-941, gnl|Hg17|chr11 (111547703-111548426)
               

               
               239-941, gnl|Mm7|chr9 (50536075-50535438)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               75-188, gnl|bosTau2|chr15 (8393109-8392996)
               

               
               75-188, gnl|canFam2|chr5 (23979041-23978678)
               

               
               75-188, gnl|dasNov1|scaffold_14695 (39884-40259)
               

               
               75-188, gnl|echTel1|scaffold_286766 (36244-36615)
               

               
               75-188, gnl|hg17|chr11 (111546324-111546680)
               

               
               75-188, gnl|Hg17|chr11 (111546350-111546463)
               

               
               75-188, gnl|loxAfr1|scaffold_203603 (236-587)
               

               
               75-188, gnl|mm7|chr9 (50537107-50536775)
               

               
               75-188, gnl|Mm7|chr9 (50537081-50536969)
               

               
               75-188, gnl|monDom2|scaffold_2 (129715429-129715020)
               

               
               75-188, gnl|oryCun1|scaffold_71952 (7437-7808)
               

               
               75-188, gnl|panTro1|chr9 (113555091-113555447)
               

               
               75-188, gnl|rheMac2|chr14 (110635150-110635506)
               

               
               75-188, gnl|rn3|chr8 (53939949-53939646)
               

               
               75-188, gnl|xenTro1|scaffold_1807 (34508-34159)
               


               
               239-941, gnl|bosTau2|chr15 (8392094-8391423)
               

               
               239-941, gnl|Hg17|chr11 (111547703-111548426)
               

               
               239-941, gnl|Mm7|chr9 (50536075-50535438)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               sag (0.182715)
               

               
               fbs (0.175346)
               

               
               liv (0.146284)
               

               
               cst (0.140036)
               

               
               tra (0.123092)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.182715)
               

               
               fbs (0.175346)
               

               
               liv (0.146284)
               

               
               cst (0.140036)
               

               
               tra (0.123092)

	75-188, gnl\|bosTau2\|chr15 (8393109-8392996)
	75-188, gnl\|canFam2\|chr5 (23979041-23978678)
	75-188, gnl\|dasNov1\|scaffold_14695 (39884-40259)
	75-188, gnl\|echTel1\|scaffold_286766 (36244-36615)
	75-188, gnl\|hg17\|chr11 (111546324-111546680)
	75-188, gnl\|Hg17\|chr11 (111546350-111546463)
	75-188, gnl\|loxAfr1\|scaffold_203603 (236-587)
	75-188, gnl\|mm7\|chr9 (50537107-50536775)
	75-188, gnl\|Mm7\|chr9 (50537081-50536969)
	75-188, gnl\|monDom2\|scaffold_2 (129715429-129715020)
	75-188, gnl\|oryCun1\|scaffold_71952 (7437-7808)
	75-188, gnl\|panTro1\|chr9 (113555091-113555447)
	75-188, gnl\|rheMac2\|chr14 (110635150-110635506)
	75-188, gnl\|rn3\|chr8 (53939949-53939646)
	75-188, gnl\|xenTro1\|scaffold_1807 (34508-34159)

	239-941, gnl\|bosTau2\|chr15 (8392094-8391423)
	239-941, gnl\|Hg17\|chr11 (111547703-111548426)
	239-941, gnl\|Mm7\|chr9 (50536075-50535438)

	sag (0.182715)
	fbs (0.175346)
	liv (0.146284)
	cst (0.140036)
	tra (0.123092)