Non-Coding RNA Search

Ss1.1-Mixn-0032a03.5

Sequence:


               
               GTGGTAACAGCTCATTTATTTAGCCAAAAATAGATACTTTCTTGTACAATTTGGTTCACA
CATATGTACACTTTTTTCTGTATATACAAAAAATGTCAGACACGCCTATTCTCACGGAAA
CTCCACCCCCCCTCCCCAAATCAACCGAACAAACCTCACAAACTCAGCTACTGTGGGGTA
CAGAAGCCACTGGGGGAGGGCTGCGGGGGACTTGTTTTCTTTTCTTTCTTTTTCTGTTGA
GTTTTCTTTTTAGGTATTCATACACGACATGCTTACAAGTCATAACTATACAGAGCGATT
TTTTTTTACAATTATTACAACAATTTAAATTTTTTTTAAAAAAAAGAATTAAGATGAGGA
GAGAGCCGATAAGACCAGAGCAGCGTCCAGGTGGTTCTGAGGCCGCCTGGGCACGGGTTG
GAAAGCTGTCTTGAGTAACTTTTTCTCCACTTCCAAGGCACTACAGCGATCTGTTCCGCC
CTCGGGCTCCGCCGGCCGAGCGAAGGCGGCGGCTGCGGCAGCCGGGTGGCCCGCGGCTCC
GGGAAGTCCCAGCAGGTGTGGAGGGGCCGAGCCGAGTAGGGAGAGCGGGTGCGGGCGTGG
GCCGGGCGGCGGGCCGGGGAACGGCCTGTTGGTCCAAGCGGGGAACTTGCCTAGCGGCGC
TGAGACGAGTCTGTGAGCTGCGGCTGCGGCGGCGGCGGGAGAGAGCTGCAGGGCTGGGGG
CGCGACGGCTGCCCCGGGGGGAGAACCCCCCGCGCCTGGAGGCGAGCGGCGCGGATTGTC
CGGGCTTGTGGCCGTCTCGGCCAGGGACCAGATCTTGGGTTTCTGCAAGGCCGAGGCGGG
CGCTGGTGCAGCAGCGCAGGGGTCCAGGCCCGCTGAGGGCGAAGGAGGAGATGGCAGAGC
CGCGGCCACCGGCGGTGGCACTGGGGCCAGACTCAGGACGGGCAGTGGACGCTCCTCCAA
GCCCTCGGAACTGTCATCTGAGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGTAACAGCTCATTTATTTAGCCAAAAATAGATACTTTCTTGTACAATTTGGTTCACA
CATATGTACACTTTTTTCTGTATATACAAAAAATGTCAGACACGCCTATTCTCACGGAAA
CTCCACCCCCCCTCCCCAAATCAACCGAACAAACCTCACAAACTCAGCTACTGTGGGGTA
CAGAAGCCACTGGGGGAGGGCTGCGGGGGACTTGTTTTCTTTTCTTTCTTTTTCTGTTGA
GTTTTCTTTTTAGGTATTCATACACGACATGCTTACAAGTCATAACTATACAGAGCGATT
TTTTTTTACAATTATTACAACAATTTAAATTTTTTTTAAAAAAAAGAATTAAGATGAGGA
GAGAGCCGATAAGACCAGAGCAGCGTCCAGGTGGTTCTGAGGCCGCCTGGGCACGGGTTG
GAAAGCTGTCTTGAGTAACTTTTTCTCCACTTCCAAGGCACTACAGCGATCTGTTCCGCC
CTCGGGCTCCGCCGGCCGAGCGAAGGCGGCGGCTGCGGCAGCCGGGTGGCCCGCGGCTCC
GGGAAGTCCCAGCAGGTGTGGAGGGGCCGAGCCGAGTAGGGAGAGCGGGTGCGGGCGTGG
GCCGGGCGGCGGGCCGGGGAACGGCCTGTTGGTCCAAGCGGGGAACTTGCCTAGCGGCGC
TGAGACGAGTCTGTGAGCTGCGGCTGCGGCGGCGGCGGGAGAGAGCTGCAGGGCTGGGGG
CGCGACGGCTGCCCCGGGGGGAGAACCCCCCGCGCCTGGAGGCGAGCGGCGCGGATTGTC
CGGGCTTGTGGCCGTCTCGGCCAGGGACCAGATCTTGGGTTTCTGCAAGGCCGAGGCGGG
CGCTGGTGCAGCAGCGCAGGGGTCCAGGCCCGCTGAGGGCGAAGGAGGAGATGGCAGAGC
CGCGGCCACCGGCGGTGGCACTGGGGCCAGACTCAGGACGGGCAGTGGACGCTCCTCCAA
GCCCTCGGAACTGTCATCTGAGTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8N4G7_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8N4G7_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               222-315, + strand, RNAz p=0.953771
               

               
               835-954, - strand, RNAz p=0.657152

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               222-315, + strand, RNAz p=0.953771
               

               
               835-954, - strand, RNAz p=0.657152

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-404, gnl|bosTau2|chrX (46104646-46105059)
               

               
               1-404, gnl|Hg17|chr16 (52874728-52875154)
               

               
               1-404, gnl|Mm7|chr8 (90391241-90391681)
               


               
               445-984, gnl|bosTau2|chrX (46105706-46106245)
               

               
               445-984, gnl|Hg17|chr16 (52875884-52876420)
               

               
               445-984, gnl|Mm7|chr8 (90392357-90392896)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-404, gnl|bosTau2|chrX (46104646-46105059)
               

               
               1-404, gnl|Hg17|chr16 (52874728-52875154)
               

               
               1-404, gnl|Mm7|chr8 (90391241-90391681)
               


               
               445-984, gnl|bosTau2|chrX (46105706-46106245)
               

               
               445-984, gnl|Hg17|chr16 (52875884-52876420)
               

               
               445-984, gnl|Mm7|chr8 (90392357-90392896)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cga (0.558191)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               che (0.136314)
               

               
               lyg (0.133103)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.558191)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               che (0.136314)
               

               
               lyg (0.133103)

	222-315, + strand, RNAz p=0.953771
	835-954, - strand, RNAz p=0.657152

	1-404, gnl\|bosTau2\|chrX (46104646-46105059)
	1-404, gnl\|Hg17\|chr16 (52874728-52875154)
	1-404, gnl\|Mm7\|chr8 (90391241-90391681)

	445-984, gnl\|bosTau2\|chrX (46105706-46106245)
	445-984, gnl\|Hg17\|chr16 (52875884-52876420)
	445-984, gnl\|Mm7\|chr8 (90392357-90392896)

	cga (0.558191)
	nep (0.183925)
	sag (0.182715)
	che (0.136314)
	lyg (0.133103)