Non-Coding RNA Search

Ss1.1-Mixn-0032a10.5

Sequence:


               
               GGGAGAAGAGCAGTTTCTCTATACTCTGACAGACTTGGAACGCCAGTTGGAAGAGCAGAA
GAAGCAAGCTCAGGATCACAGGCTGAAATCCCAGACAGTTCAAAATGTGGTACTGATGCC
TGTGAGCACTCCTAAGCCTCCAAAAAGGCCCCGGCTCCAGCGGCCAGCCTCCACCACCGT
CCTGAGCCCTTCTCCTCCTGTGCAGCAGCCTCAATTCACAGTCATCTCACCCATTACCAT
TACCCCAGTGGGTCAGTCATTTTCCATGAGCAATATTCCAGTGGCCACCCTCAGCCAGGG
CTCCAGTCCTGTGACTGTCCACACACTGCCTTCTGGTCCTCAGCTCTTCCGTTATGCCAC
AGTGGTCTCCTCTGCCAAGAGCAGCTCACCAGACACAGTGACCATCCACCCTTCATCTAG
CTTGGCGCTGCTGAGCTCCACCGCCATGCAGGATGGGAGTACCCTGGGCAACATGACCAC
CATGGTGAGCCCTGTGGAGCTGGTGGCCATGGAGTCGGGCCTGACCTCGGCAATCCAGGC
TGTTGAAAGCACCTCAGAGGATGGGCAGACCATCATTGAGATTGACCCAGCCCCAGACCC
AGAGGCTGAGGACACTGAGGGCAAAGCAGTCATTTTGGAGACAGAGTTGAGGACTGAGGA
GAAAGTTGTGGCTGAGATGGAAGAACACCAGCATCAAGTCCACAATGTGGAGATTGTGGT
CTTAGAGGATTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAGAAGAGCAGTTTCTCTATACTCTGACAGACTTGGAACGCCAGTTGGAAGAGCAGAA
GAAGCAAGCTCAGGATCACAGGCTGAAATCCCAGACAGTTCAAAATGTGGTACTGATGCC
TGTGAGCACTCCTAAGCCTCCAAAAAGGCCCCGGCTCCAGCGGCCAGCCTCCACCACCGT
CCTGAGCCCTTCTCCTCCTGTGCAGCAGCCTCAATTCACAGTCATCTCACCCATTACCAT
TACCCCAGTGGGTCAGTCATTTTCCATGAGCAATATTCCAGTGGCCACCCTCAGCCAGGG
CTCCAGTCCTGTGACTGTCCACACACTGCCTTCTGGTCCTCAGCTCTTCCGTTATGCCAC
AGTGGTCTCCTCTGCCAAGAGCAGCTCACCAGACACAGTGACCATCCACCCTTCATCTAG
CTTGGCGCTGCTGAGCTCCACCGCCATGCAGGATGGGAGTACCCTGGGCAACATGACCAC
CATGGTGAGCCCTGTGGAGCTGGTGGCCATGGAGTCGGGCCTGACCTCGGCAATCCAGGC
TGTTGAAAGCACCTCAGAGGATGGGCAGACCATCATTGAGATTGACCCAGCCCCAGACCC
AGAGGCTGAGGACACTGAGGGCAAAGCAGTCATTTTGGAGACAGAGTTGAGGACTGAGGA
GAAAGTTGTGGCTGAGATGGAAGAACACCAGCATCAAGTCCACAATGTGGAGATTGTGGT
CTTAGAGGATTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|50765103|ref|XP_426847.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50765103|ref|XP_426847.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               34-513, - strand, RNAz p=0.985053
               

               
               615-732, + strand, RNAz p=0.760463

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               34-513, - strand, RNAz p=0.985053
               

               
               615-732, + strand, RNAz p=0.760463

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               12-732, gnl|bosTau2|chr2 (76870328-76871047)
               

               
               12-732, gnl|Hg17|chr1 (28861179-28861900)
               

               
               12-732, gnl|Mm7|chr4 (131440920-131440185)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-732, gnl|bosTau2|chr2 (76870328-76871047)
               

               
               12-732, gnl|Hg17|chr1 (28861179-28861900)
               

               
               12-732, gnl|Mm7|chr4 (131440920-131440185)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               elu (0.385356)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               eep (0.122564)

	34-513, - strand, RNAz p=0.985053
	615-732, + strand, RNAz p=0.760463

	12-732, gnl\|bosTau2\|chr2 (76870328-76871047)
	12-732, gnl\|Hg17\|chr1 (28861179-28861900)
	12-732, gnl\|Mm7\|chr4 (131440920-131440185)