Non-Coding RNA Search

Ss1.1-Mixn-0032b09.5

Sequence:


               
               GTGCCTTAAAAGCCTCTTACTTCAAGTGCAAATGATTCTTTGAGGGAAAGGCAAAGTCAG
TGCTATGGCATAGGACCCAAGTTCATTGTAGTAAGTATGCTCTTTGATTAATCACACACT
GATGGATAGACTACTGTCTCAACGCTGTGAGCATGGCAATGACCTCTGAATTAAAGAGAG
ATGTCGGAGTTATGTCTAAGCATTCAGTTTCTGAAGTCTGTGCTATTGGAATTACAAAGT
GTCTTCAATTCCTATTTCATTTCATTTTTGATGTGGGACTTAGCTTGCTGCAATGTGTGT
GGCCACTTTTAGGTCTCAAATCTAATGCTATAAATACATGTAAATATACAAAATAATGTA
TACATATAAAGCCCAAATACATGGCTACAGTGACTGCTCTGGAACACTTTTGCTCATTTC
CAAAGGGTTAAGAACTTGACCTACATGTTTCCAGGGCAATTAGAACTTCATGTGGTGGTG
AGACTTTCTGTAAATGATCACCTTTGGTTATTTTCATTGATGTAGATTAGTGTGTATGAC
CAGGGTAGCGTGTTTTGGAAGGAATGTAAGTCAAAGCTGGTTGACATTCACAAACAGTAA
TATTTTGTGAACATAATATATTTTGGACCCTTCAATATAAAATGACTAAAAACCACAGCA
ATATTGTTACATACGGGTTATATGTTGACTGTTTGAAACACAAGAAAAATAGCTGAATTG
TCTTGATTATTAAAGTATGGTATGCATTCAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGCCTTAAAAGCCTCTTACTTCAAGTGCAAATGATTCTTTGAGGGAAAGGCAAAGTCAG
TGCTATGGCATAGGACCCAAGTTCATTGTAGTAAGTATGCTCTTTGATTAATCACACACT
GATGGATAGACTACTGTCTCAACGCTGTGAGCATGGCAATGACCTCTGAATTAAAGAGAG
ATGTCGGAGTTATGTCTAAGCATTCAGTTTCTGAAGTCTGTGCTATTGGAATTACAAAGT
GTCTTCAATTCCTATTTCATTTCATTTTTGATGTGGGACTTAGCTTGCTGCAATGTGTGT
GGCCACTTTTAGGTCTCAAATCTAATGCTATAAATACATGTAAATATACAAAATAATGTA
TACATATAAAGCCCAAATACATGGCTACAGTGACTGCTCTGGAACACTTTTGCTCATTTC
CAAAGGGTTAAGAACTTGACCTACATGTTTCCAGGGCAATTAGAACTTCATGTGGTGGTG
AGACTTTCTGTAAATGATCACCTTTGGTTATTTTCATTGATGTAGATTAGTGTGTATGAC
CAGGGTAGCGTGTTTTGGAAGGAATGTAAGTCAAAGCTGGTTGACATTCACAAACAGTAA
TATTTTGTGAACATAATATATTTTGGACCCTTCAATATAAAATGACTAAAAACCACAGCA
ATATTGTTACATACGGGTTATATGTTGACTGTTTGAAACACAAGAAAAATAGCTGAATTG
TCTTGATTATTAAAGTATGGTATGCATTCAAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               308-733, gnl|bosTau2|chr10 (33678012-33677585)
               

               
               308-733, gnl|Hg17|chr6 (90131855-90131460)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               308-733, gnl|bosTau2|chr10 (33678012-33677585)
               

               
               308-733, gnl|Hg17|chr6 (90131855-90131460)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               fce (0.271592)
               

               
               nms (0.213858)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               ssp (0.13552)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               nms (0.213858)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               ssp (0.13552)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)

	308-733, gnl\|bosTau2\|chr10 (33678012-33677585)
	308-733, gnl\|Hg17\|chr6 (90131855-90131460)

	fce (0.271592)
	nms (0.213858)
	sag (0.182715)
	mgm (0.180343)
	gul (0.177588)
	fhi (0.169578)
	mga (0.160205)
	ssp (0.13552)
	ret (0.128733)
	thg (0.126791)
	pgl (0.118483)